Plant Circular RNA Database

Detail information of Os08g0187700_circ_g.4

			
						 General Information
					
						CircRNA Name
						Os08g0187700_circ_g.4
					
						ID in PlantcircBase
						osa_circ_036184
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr8: 5123242-5126639  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							Os08g0187700						
					
						Parent gene annotation
						
							ENTH/VHS domain containing protein. (Os08t0187700-01)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							Os08g0187700_circ_g.3 						
					
						Support reads
						1
					
						Tissues
						root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os08t0187700-01:3

General Information
CircRNA Name	Os08g0187700_circ_g.4
ID in PlantcircBase	osa_circ_036184
Alias	NA
Organism	Oryza sativa
Position	chr8: 5123242-5126639 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	CIRCexplorer
Parent gene	Os08g0187700
Parent gene annotation	ENTH/VHS domain containing protein. (Os08t0187700-01)
Parent gene strand	-
Alternative splicing	Os08g0187700_circ_g.3
Support reads	1
Tissues	root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os08t0187700-01:3

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							TCTGCAACCTAGCGGCAAAATGCCCTACATATTCTCGTCCTATGTTCTTCACAATACTGTCTAG
CAGATACAAAGATGGTAATTTCTGGTCGGCAGACACcccgttagtaggaattctatcttcgaga
tttagtggtggcccatcaattgctggtcgaggagcctggcctggccaactgtgcctcacaatat
cagattcc

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 1200
Transcript exons: 5123242-5123958,5125974-5126090,5126274-5126639
CCCGTTAGTAGGAATTCTATCTTCGAGATTTAGTGGTGGCCCATCAATTGCTGGTCGAGGAGCC
TGGCCTGGCCAACTGTGCCTCACAATATCAGATTCCAGTAGTCCACTGTTTGGCCCAAGAAATC
CAGCTCTCAGGGTTCCAAGGGGAGGTAAAGAGGGCACGCTGGTTCTGTTTCGATCAGTTAAAGT
AGGACTCATATCTTCCCAAGTATACTCTTCTTCCTCCGAAGTTAGCCATTTTTGTGCACTAGGT
CTGCCTGCCATGCCATTTGAATCTAGACGTTGCATCTTGGGAAGCCTTTCATCGACATCTTTTC
CTTGAGAATTTCCATAAGCATCAATAAGTTCCCTTGCACTTTGCTTTCTATATTCTTCATCAAG
TATGCTCATCGAAGGCCGTTGTGCACCATCCTCAAAAGCCCACTTCCGTTCAAACCAACCATTT
CGATCAGGCAATCTTCTGGGGTCAGGTCCTAGAACAGAATGCGATAGTGGTGGCCTCTCCAGAG
CTCTCTTGGGGGATGCATTTCTAGGGAGCACATCAAGAGGTGGTGATCTTGACATGGTTCTTCT
TGAATTGGCTAATGGTCCTTCTGTATTGAGTATGGAAGGATGTTTGCTTAAAAGATGTGGCGAA
CTTGGCCTTATCAACCCAGTATGTGAACAAAATGCCTCTTGTTGATCAAGATCGTCAGCATACA
GCATAGTAGACTTCTGGAGCTTTGAATTAGTTGCAGGCCATCCTCGCGAACTTTTAGATGTTAA
ACCATTTATTTGATCCTCTTCCACATCATTCATTTGCCGATTTCCACGAGTTATTGGTTGATGC
ACCGAAGTTGACTGCTTAAATTGTTGTTGTGCTTCTAAATATTTTGGATTTACATGAATGGCAT
GAGACAGTCTAGGAGATATCGACTCTGACTGTCGGATATCAGTCGCTGTGGCAGAGCGCTTATT
CTCTAAGGGGGAAAACTGAAGCTCATCCTCAATTCCGCGTAGCACAGAGGAAGGGAACACTTGT
GACCAGGTACCAAAGAGGTGTCGCATTGCAGCATGCTGATTGCGGTGAACTTTCCTATAGGCAT
CACAAAATACCTTCTGCAACCTAGCGGCAAAATGCCCTACATATTCTCGTCCTATGTTCTTCAC
AATACTGTCTAGCAGATACAAAGATGGTAATTTCTGGTCGGCAGACAC
						
					

						Genomic sequence
						
							CCCGTTAGTAGGAATTCTATCTTCGAGATTTAGTGGTGGCCCATCAATTGCTGGTCGAGGAGCC
TGGCCTGGCCAACTGTGCCTCACAATATCAGATTCCAGTAGTCCACTGTTTGGCCCAAGAAATC
CAGCTCTCAGGGTTCCAAGGGGAGGTAAAGAGGGCACGCTGGTTCTGTTTCGATCAGTTAAAGT
AGGACTCATATCTTCCCAAGTATACTCTTCTTCCTCCGAAGTTAGCCATTTTTGTGCACTAGGT
CTGCCTGCCATGCCATTTGAATCTAGACGTTGCATCTTGGGAAGCCTTTCATCGACATCTTTTC
CTTGAGAATTTCCATAAGCATCAATAAGTTCCCTTGCACTTTGCTTTCTATATTCTTCATCAAG
TATGCTCATCGAAGGCCGTTGTGCACCATCCTCAAAAGCCCACTTCCGTTCAAACCAACCATTT
CGATCAGGCAATCTTCTGGGGTCAGGTCCTAGAACAGAATGCGATAGTGGTGGCCTCTCCAGAG
CTCTCTTGGGGGATGCATTTCTAGGGAGCACATCAAGAGGTGGTGATCTTGACATGGTTCTTCT
TGAATTGGCTAATGGTCCTTCTGTATTGAGTATGGAAGGATGTTTGCTTAAAAGATGTGGCGAA
CTTGGCCTTATCAACCCAGTATGTGAACAAAATGCCTCTTGTTGATCAAGATCGTCAGCATACA
GCATAGTAGACTTCTGTCCATATGATTTCAAGACAGATTATAAACAAAACTTACATGTTACATT
TTAGATAAACAAAACAACAAAGTAGCAACAGCATATCAAAACTTGAATTGAAATAAAAATTACT
GAGCAGGGAAAACTTCATAGGAAAAAATCCCATTTAATAATCTACACTCCTTATAAAAGGGAGT
AGACAGGTGGTGGTTCTGCCACCACCCCCAATACAACTCCCAATTTTTTTTACAGAAAAGATGA
CATGTGGCACTAGAGGGCCCACAAGTCAACTACTCCCACCAACTCTCATATTTTTTGTGGGAAG
GAAAACAGATTAATGTGGGACTAAAAAAGGTCTACATGTGATTGAAAATATATATACAAAAATT
AAGAGACGTTAATGAAATGTTCATGGTAATTTTCTTTAATTAAAATTCTGTTGCAACGCACAGG
CAATATGCTAGTGTCCAGAAATCAACCATAAACTTCATAACTGCACACAATTCAACCCTGAACA
TTCAAAACCACACATTTTTCATTCTTCGCACAAATTTGAAGTGGTTTTGACAATTTGACTTTTG
ATAGACATGGAGTAAGATTACATGGCAAAGTGGAAAGGCTGAAAAAAAATCGAATTTCAAAAAT
TTTAAAATAAAAATCTTAGAAATACTTAAAAATTGCCACTGCTCTATACGGTATTTTGCAACAA
CAAAAAGTTCATAGGAGTTGAATAAACTATAATCCCCACAGAAAATAGTTTTAAATCTAGATAA
AACCATTTTTGTGCATCAAATAAACTTGATTTTGCTATGCTCATAAAGTCATAATTTATTTATG
TTTCAATACACCAATATGCAACTGAGAATCTTTACAGATTATTTTTTGTGAAGTGGTTTAAAAA
TTATAAAAATTCAAATGCAATTTCATCCTTGGGTTACGTATTTGAATTTTACAAAATAGTAATT
GAAGTATAAAAACATTTGTACATTAGACCATCTAGAACCTATTTGTTCAGAGTGGAATATAGTT
TAATTATCTCCTAAAATATGGTTTTGTTCATATTTAAGCACTATTTTCTGCATGGAAAACTGCA
AATTGTACTATATTTTGCTCATATAGAAATATATCTATGTTATAAATACTCCATAGAAGTTATA
ATTTTGAAGAATTTTGAAGTCATTTACAAATTTTTAAAATTAGAAAATATTTAAAGTCTTATGC
CACATCGCCATGTCACCCAAAACTAGGCTAAATTTGGGTAATGTTAAGACTTGAGAAGGGCAGA
GTTCTGAAAGTGAAGTTTGGGGTTGTAAAAAGCATTTTCTCTTATTTAATATTGAGATGGATGG
ATTTTGTTACACCTGGAGACAACGAAGGTGCTTTACATTGTCCCAAACAATGCAAATGTCATCA
CAAGAGTTATAGGAACTCACTGAAGACTACAAACAGAGCCAGGGTTTACAAATGTGTTAAATCA
CATGGTTGTTGCTATCTCAAATAACCACTCCCAAAACAGAACAAAAGGGAGGTTCTCCTTTGTC
AAGCTACAAAGAGAGCACCTTCAAAGCCCCTATTGATGAGTCAGTAATCAGTACATATATGAGA
AAGAAAACAACAGAACTGCTTCTATGTTGTAAAAAAGCACAAATGCATTAAGGATCTGATTTGC
AACTAGTAGATACTGTCTTCAGTGTTAGGATTTATGCAGTTTAATTTTCTGGTGATCACAGGAG
AACCAGAATGAGTTGCGCAAAAAACAGAACTCATTACTGTGTACTTATAAAAAGATAGGACTCA
ACAGTAGCATCTATCTGTATAGTATTGGCTTATACTCCCTCCGCCCCAAAAAAAGCTAACTTAG
GTGGGGATTTGACACCATCTAGGACAATGAATCTGGACATGAGGAGGTGGTGTCAAATCCCCAC
CTAGGTTGGTTTTTTCTAGGACGGAGGGAGTAGGTCTCAAACCTGGCTGGTAATTCAGAGTGAA
AGAATGACAAGAAGCAAAAAAAAGGAAGATGAAAGACCCAGTACCTGGAGCTTTGAATTAGTTG
CAGGCCATCCTCGCGAACTTTTAGATGTTAAACCATTTATTTGATCCTCTTCCACATCATTCAT
TTGCCGATTTCCACGAGTTATTGGTTGATGCACCTAAAAAATATATGCACAAACTCCAATGTAT
AAAATTGATCTGAAACAGAAAGGCATCACATATATCTCAAGCTAGGCAATGAAATAAATAGACA
CCATGCTTAAATCACACAACAAATAGTCAAAACAACTAGCTGTAGCAAATAATCAAGTTGGTAT
TAACAAGAAGTAAAAAACACATACCGAAGTTGACTGCTTAAATTGTTGTTGTGCTTCTAAATAT
TTTGGATTTACATGAATGGCATGAGACAGTCTAGGAGATATCGACTCTGACTGTCGGATATCAG
TCGCTGTGGCAGAGCGCTTATTCTCTAAGGGGGAAAACTGAAGCTCATCCTCAATTCCGCGTAG
CACAGAGGAAGGGAACACTTGTGACCAGGTACCAAAGAGGTGTCGCATTGCAGCATGCTGATTG
CGGTGAACTTTCCTATAGGCATCACAAAATACCTTCTGCAACCTAGCGGCAAAATGCCCTACAT
ATTCTCGTCCTATGTTCTTCACAATACTGTCTAGCAGATACAAAGATGGTAATTTCTGGTCGGC
AGACAC
						
					

			
		

Sequences
Splice junction sequence	TCTGCAACCTAGCGGCAAAATGCCCTACATATTCTCGTCCTATGTTCTTCACAATACTGTCTAG CAGATACAAAGATGGTAATTTCTGGTCGGCAGACACcccgttagtaggaattctatcttcgaga tttagtggtggcccatcaattgctggtcgaggagcctggcctggccaactgtgcctcacaatat cagattcc
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 1200 Transcript exons: 5123242-5123958,5125974-5126090,5126274-5126639 CCCGTTAGTAGGAATTCTATCTTCGAGATTTAGTGGTGGCCCATCAATTGCTGGTCGAGGAGCC TGGCCTGGCCAACTGTGCCTCACAATATCAGATTCCAGTAGTCCACTGTTTGGCCCAAGAAATC CAGCTCTCAGGGTTCCAAGGGGAGGTAAAGAGGGCACGCTGGTTCTGTTTCGATCAGTTAAAGT AGGACTCATATCTTCCCAAGTATACTCTTCTTCCTCCGAAGTTAGCCATTTTTGTGCACTAGGT CTGCCTGCCATGCCATTTGAATCTAGACGTTGCATCTTGGGAAGCCTTTCATCGACATCTTTTC CTTGAGAATTTCCATAAGCATCAATAAGTTCCCTTGCACTTTGCTTTCTATATTCTTCATCAAG TATGCTCATCGAAGGCCGTTGTGCACCATCCTCAAAAGCCCACTTCCGTTCAAACCAACCATTT CGATCAGGCAATCTTCTGGGGTCAGGTCCTAGAACAGAATGCGATAGTGGTGGCCTCTCCAGAG CTCTCTTGGGGGATGCATTTCTAGGGAGCACATCAAGAGGTGGTGATCTTGACATGGTTCTTCT TGAATTGGCTAATGGTCCTTCTGTATTGAGTATGGAAGGATGTTTGCTTAAAAGATGTGGCGAA CTTGGCCTTATCAACCCAGTATGTGAACAAAATGCCTCTTGTTGATCAAGATCGTCAGCATACA GCATAGTAGACTTCTGGAGCTTTGAATTAGTTGCAGGCCATCCTCGCGAACTTTTAGATGTTAA ACCATTTATTTGATCCTCTTCCACATCATTCATTTGCCGATTTCCACGAGTTATTGGTTGATGC ACCGAAGTTGACTGCTTAAATTGTTGTTGTGCTTCTAAATATTTTGGATTTACATGAATGGCAT GAGACAGTCTAGGAGATATCGACTCTGACTGTCGGATATCAGTCGCTGTGGCAGAGCGCTTATT CTCTAAGGGGGAAAACTGAAGCTCATCCTCAATTCCGCGTAGCACAGAGGAAGGGAACACTTGT GACCAGGTACCAAAGAGGTGTCGCATTGCAGCATGCTGATTGCGGTGAACTTTCCTATAGGCAT CACAAAATACCTTCTGCAACCTAGCGGCAAAATGCCCTACATATTCTCGTCCTATGTTCTTCAC AATACTGTCTAGCAGATACAAAGATGGTAATTTCTGGTCGGCAGACAC
Genomic sequence	CCCGTTAGTAGGAATTCTATCTTCGAGATTTAGTGGTGGCCCATCAATTGCTGGTCGAGGAGCC TGGCCTGGCCAACTGTGCCTCACAATATCAGATTCCAGTAGTCCACTGTTTGGCCCAAGAAATC CAGCTCTCAGGGTTCCAAGGGGAGGTAAAGAGGGCACGCTGGTTCTGTTTCGATCAGTTAAAGT AGGACTCATATCTTCCCAAGTATACTCTTCTTCCTCCGAAGTTAGCCATTTTTGTGCACTAGGT CTGCCTGCCATGCCATTTGAATCTAGACGTTGCATCTTGGGAAGCCTTTCATCGACATCTTTTC CTTGAGAATTTCCATAAGCATCAATAAGTTCCCTTGCACTTTGCTTTCTATATTCTTCATCAAG TATGCTCATCGAAGGCCGTTGTGCACCATCCTCAAAAGCCCACTTCCGTTCAAACCAACCATTT CGATCAGGCAATCTTCTGGGGTCAGGTCCTAGAACAGAATGCGATAGTGGTGGCCTCTCCAGAG CTCTCTTGGGGGATGCATTTCTAGGGAGCACATCAAGAGGTGGTGATCTTGACATGGTTCTTCT TGAATTGGCTAATGGTCCTTCTGTATTGAGTATGGAAGGATGTTTGCTTAAAAGATGTGGCGAA CTTGGCCTTATCAACCCAGTATGTGAACAAAATGCCTCTTGTTGATCAAGATCGTCAGCATACA GCATAGTAGACTTCTGTCCATATGATTTCAAGACAGATTATAAACAAAACTTACATGTTACATT TTAGATAAACAAAACAACAAAGTAGCAACAGCATATCAAAACTTGAATTGAAATAAAAATTACT GAGCAGGGAAAACTTCATAGGAAAAAATCCCATTTAATAATCTACACTCCTTATAAAAGGGAGT AGACAGGTGGTGGTTCTGCCACCACCCCCAATACAACTCCCAATTTTTTTTACAGAAAAGATGA CATGTGGCACTAGAGGGCCCACAAGTCAACTACTCCCACCAACTCTCATATTTTTTGTGGGAAG GAAAACAGATTAATGTGGGACTAAAAAAGGTCTACATGTGATTGAAAATATATATACAAAAATT AAGAGACGTTAATGAAATGTTCATGGTAATTTTCTTTAATTAAAATTCTGTTGCAACGCACAGG CAATATGCTAGTGTCCAGAAATCAACCATAAACTTCATAACTGCACACAATTCAACCCTGAACA TTCAAAACCACACATTTTTCATTCTTCGCACAAATTTGAAGTGGTTTTGACAATTTGACTTTTG ATAGACATGGAGTAAGATTACATGGCAAAGTGGAAAGGCTGAAAAAAAATCGAATTTCAAAAAT TTTAAAATAAAAATCTTAGAAATACTTAAAAATTGCCACTGCTCTATACGGTATTTTGCAACAA CAAAAAGTTCATAGGAGTTGAATAAACTATAATCCCCACAGAAAATAGTTTTAAATCTAGATAA AACCATTTTTGTGCATCAAATAAACTTGATTTTGCTATGCTCATAAAGTCATAATTTATTTATG TTTCAATACACCAATATGCAACTGAGAATCTTTACAGATTATTTTTTGTGAAGTGGTTTAAAAA TTATAAAAATTCAAATGCAATTTCATCCTTGGGTTACGTATTTGAATTTTACAAAATAGTAATT GAAGTATAAAAACATTTGTACATTAGACCATCTAGAACCTATTTGTTCAGAGTGGAATATAGTT TAATTATCTCCTAAAATATGGTTTTGTTCATATTTAAGCACTATTTTCTGCATGGAAAACTGCA AATTGTACTATATTTTGCTCATATAGAAATATATCTATGTTATAAATACTCCATAGAAGTTATA ATTTTGAAGAATTTTGAAGTCATTTACAAATTTTTAAAATTAGAAAATATTTAAAGTCTTATGC CACATCGCCATGTCACCCAAAACTAGGCTAAATTTGGGTAATGTTAAGACTTGAGAAGGGCAGA GTTCTGAAAGTGAAGTTTGGGGTTGTAAAAAGCATTTTCTCTTATTTAATATTGAGATGGATGG ATTTTGTTACACCTGGAGACAACGAAGGTGCTTTACATTGTCCCAAACAATGCAAATGTCATCA CAAGAGTTATAGGAACTCACTGAAGACTACAAACAGAGCCAGGGTTTACAAATGTGTTAAATCA CATGGTTGTTGCTATCTCAAATAACCACTCCCAAAACAGAACAAAAGGGAGGTTCTCCTTTGTC AAGCTACAAAGAGAGCACCTTCAAAGCCCCTATTGATGAGTCAGTAATCAGTACATATATGAGA AAGAAAACAACAGAACTGCTTCTATGTTGTAAAAAAGCACAAATGCATTAAGGATCTGATTTGC AACTAGTAGATACTGTCTTCAGTGTTAGGATTTATGCAGTTTAATTTTCTGGTGATCACAGGAG AACCAGAATGAGTTGCGCAAAAAACAGAACTCATTACTGTGTACTTATAAAAAGATAGGACTCA ACAGTAGCATCTATCTGTATAGTATTGGCTTATACTCCCTCCGCCCCAAAAAAAGCTAACTTAG GTGGGGATTTGACACCATCTAGGACAATGAATCTGGACATGAGGAGGTGGTGTCAAATCCCCAC CTAGGTTGGTTTTTTCTAGGACGGAGGGAGTAGGTCTCAAACCTGGCTGGTAATTCAGAGTGAA AGAATGACAAGAAGCAAAAAAAAGGAAGATGAAAGACCCAGTACCTGGAGCTTTGAATTAGTTG CAGGCCATCCTCGCGAACTTTTAGATGTTAAACCATTTATTTGATCCTCTTCCACATCATTCAT TTGCCGATTTCCACGAGTTATTGGTTGATGCACCTAAAAAATATATGCACAAACTCCAATGTAT AAAATTGATCTGAAACAGAAAGGCATCACATATATCTCAAGCTAGGCAATGAAATAAATAGACA CCATGCTTAAATCACACAACAAATAGTCAAAACAACTAGCTGTAGCAAATAATCAAGTTGGTAT TAACAAGAAGTAAAAAACACATACCGAAGTTGACTGCTTAAATTGTTGTTGTGCTTCTAAATAT TTTGGATTTACATGAATGGCATGAGACAGTCTAGGAGATATCGACTCTGACTGTCGGATATCAG TCGCTGTGGCAGAGCGCTTATTCTCTAAGGGGGAAAACTGAAGCTCATCCTCAATTCCGCGTAG CACAGAGGAAGGGAACACTTGTGACCAGGTACCAAAGAGGTGTCGCATTGCAGCATGCTGATTG CGGTGAACTTTCCTATAGGCATCACAAAATACCTTCTGCAACCTAGCGGCAAAATGCCCTACAT ATTCTCGTCCTATGTTCTTCACAATACTGTCTAGCAGATACAAAGATGGTAATTTCTGGTCGGC AGACAC

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.226526476

Conservation Information
Conserved circRNAs	NA
PMCS	0.226526476

			
				
						 Functional Information
					

				
						Coding potential
						Y
					

						Potential coding position
						
							5126582-5123563(+)
5126491-5123244(-)
						
					

						Potential amino acid sequence
						
							MFFTILSSRYKDGNFWSADTPLVGILSSRFSGGPSIAGRGAWPGQLCLTISDSSSPLFGPRNPA
LRVPRGGKEGTLVLFRSVKVGLISSQVYSSSSEVSHFCALGLPAMPFESRRCILGSLSSTSFP*
(+)
MRHLFGTWSQVFPSSVLRGIEDELQFSPLENKRSATATDIRQSESISPRLSHAIHVNPKYLEAQ
QQFKQSTSVHQPITRGNRQMNDVEEDQINGLTSKSSRGWPATNSKLQKSTMLYADDLDQQEAFC
SHTGLIRPSSPHLLSKHPSILNTEGPLANSRRTMSRSPPLDVLPRNASPKRALERPPLSHSVLG
PDPRRLPDRNGWFERKWAFEDGAQRPSMSILDEEYRKQSARELIDAYGNSQGKDVDERLPKMQR
LDSNGMAGRPSAQKWLTSEEEEYTWEDMSPTLTDRNRTSVPSLPPLGTLRAGFLGPNSGLLESD
IVRHSWPGQAPRPAIDGPPLNLEDRIPTNGVSADQKLPSLYLLDSIVKNIGREYVGHFAARLQK
VFCDAYRKVHRNQHAAMRHLFGTWSQVFPSSVLRGIEDELQFSPLENKRSATATDIRQSESISP
RLSHAIHVNPKYLEAQQQFKQSTSVHQPITRGNRQMNDVEEDQINGLTSKSSRGWPATNSKLQK
STMLYADDLDQQEAFCSHTGLIRPSSPHLLSKHPSILNTEGPLANSRRTMSRSPPLDVLPRNAS
PKRALERPPLSHSVLGPDPRRLPDRNGWFERKWAFEDGAQRPSMSILDEEYRKQSARELIDAYG
NSQGKDVDERLPKMQRLDSNGMAGRPSAQKWLTSEEEEYTWEDMSPTLTDRNRTSVPSLPPLGT
LRAGFLGPNSGLLESDIVRHSWPGQAPRPAIDGPPLNLEDRIPTNGVSADQKLPSLYLLDSIVK
NIGREYVGHFAARLQKVFCDAYRKVHRNQHAAMRHLFGTWSQVFPSSVLRGIEDELQFSPLENK
RSATATDIRQSESISPRLSHAIHVNPKYLEAQQQFKQSTSVHQPITRGNRQMNDVEEDQINGLT
SKSSRGWPATNSKLQKSTMLYADDLDQQEAFCSHTGLIRPSSPHLLSKHPSILNTEGPLANSRR
TMSRSPPLDVLPRNASPKRALERPPLSHSVLGPDPRRLPDRNGWFERKWAFEDGAQRPSMSILD
EEYRKQSARELIDAYGNSQGKDVDERLPKMQRLDSNGMAGRPSAQKWLTSEEEEYTWEDMSPTL
TDRNRTSVPSLPPLGTLRAGFLGPNSGLLESDIVRHSWPGQAPRPAIDGPPLNLEDRIPTNGVS
ADQKLPSLYLLDSIVKNIGREYVGHFAARLQKVFCDAYRKVHRNQHAAMRHLFGTWSQVFPSSV
LRGIEDELQFSPLENKRSATATDIRQSESISPRLSHAIHVNPKYLEAQQQFKQSTSVHQPITRG
NRQMNDVEEDQINGLTSKSSRGWPATNSKLQKSTMLYADDLDQQEAFCSHTGLIRPSSPHLLSK
HPSILNTEGPLANSRRTMSRSPPLDVLPRNASPKRALERPPLSHSVLGPDPRRLPDRNGWFERK
WAFEDGAQRPSMSILDEEYRKQSARELIDAYGNSQGKDVDERLPKMQRLDSNGMAGRPSAQKWL
TSEEEEYTWEDMSPTLTDRNRTSVPSLPPLGTLRAGFLGPNSGLLESDIVRHSWPGQAPRPAID
GPPLNLEDRIPTNG(-)
						
					

						Sponge-miRNAs
						
							NA						
					

						circRNA-miRNA-mRNA network
						 VISUALIZATION
					

						Potential function description
						NA
					

			
		

Functional Information
Coding potential	Y
Potential coding position	5126582-5123563(+) 5126491-5123244(-)
Potential amino acid sequence	MFFTILSSRYKDGNFWSADTPLVGILSSRFSGGPSIAGRGAWPGQLCLTISDSSSPLFGPRNPA LRVPRGGKEGTLVLFRSVKVGLISSQVYSSSSEVSHFCALGLPAMPFESRRCILGSLSSTSFP* (+) MRHLFGTWSQVFPSSVLRGIEDELQFSPLENKRSATATDIRQSESISPRLSHAIHVNPKYLEAQ QQFKQSTSVHQPITRGNRQMNDVEEDQINGLTSKSSRGWPATNSKLQKSTMLYADDLDQQEAFC SHTGLIRPSSPHLLSKHPSILNTEGPLANSRRTMSRSPPLDVLPRNASPKRALERPPLSHSVLG PDPRRLPDRNGWFERKWAFEDGAQRPSMSILDEEYRKQSARELIDAYGNSQGKDVDERLPKMQR LDSNGMAGRPSAQKWLTSEEEEYTWEDMSPTLTDRNRTSVPSLPPLGTLRAGFLGPNSGLLESD IVRHSWPGQAPRPAIDGPPLNLEDRIPTNGVSADQKLPSLYLLDSIVKNIGREYVGHFAARLQK VFCDAYRKVHRNQHAAMRHLFGTWSQVFPSSVLRGIEDELQFSPLENKRSATATDIRQSESISP RLSHAIHVNPKYLEAQQQFKQSTSVHQPITRGNRQMNDVEEDQINGLTSKSSRGWPATNSKLQK STMLYADDLDQQEAFCSHTGLIRPSSPHLLSKHPSILNTEGPLANSRRTMSRSPPLDVLPRNAS PKRALERPPLSHSVLGPDPRRLPDRNGWFERKWAFEDGAQRPSMSILDEEYRKQSARELIDAYG NSQGKDVDERLPKMQRLDSNGMAGRPSAQKWLTSEEEEYTWEDMSPTLTDRNRTSVPSLPPLGT LRAGFLGPNSGLLESDIVRHSWPGQAPRPAIDGPPLNLEDRIPTNGVSADQKLPSLYLLDSIVK NIGREYVGHFAARLQKVFCDAYRKVHRNQHAAMRHLFGTWSQVFPSSVLRGIEDELQFSPLENK RSATATDIRQSESISPRLSHAIHVNPKYLEAQQQFKQSTSVHQPITRGNRQMNDVEEDQINGLT SKSSRGWPATNSKLQKSTMLYADDLDQQEAFCSHTGLIRPSSPHLLSKHPSILNTEGPLANSRR TMSRSPPLDVLPRNASPKRALERPPLSHSVLGPDPRRLPDRNGWFERKWAFEDGAQRPSMSILD EEYRKQSARELIDAYGNSQGKDVDERLPKMQRLDSNGMAGRPSAQKWLTSEEEEYTWEDMSPTL TDRNRTSVPSLPPLGTLRAGFLGPNSGLLESDIVRHSWPGQAPRPAIDGPPLNLEDRIPTNGVS ADQKLPSLYLLDSIVKNIGREYVGHFAARLQKVFCDAYRKVHRNQHAAMRHLFGTWSQVFPSSV LRGIEDELQFSPLENKRSATATDIRQSESISPRLSHAIHVNPKYLEAQQQFKQSTSVHQPITRG NRQMNDVEEDQINGLTSKSSRGWPATNSKLQKSTMLYADDLDQQEAFCSHTGLIRPSSPHLLSK HPSILNTEGPLANSRRTMSRSPPLDVLPRNASPKRALERPPLSHSVLGPDPRRLPDRNGWFERK WAFEDGAQRPSMSILDEEYRKQSARELIDAYGNSQGKDVDERLPKMQRLDSNGMAGRPSAQKWL TSEEEEYTWEDMSPTLTDRNRTSVPSLPPLGTLRAGFLGPNSGLLESDIVRHSWPGQAPRPAID GPPLNLEDRIPTNG(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os08g0187700_circ_g.4

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