Detail information of orai.007G198400_circ_g.1


General Information
CircRNA Name orai.007G198400_circ_g.1
ID in PlantcircBase gra_circ_000747
Alias Chr07:20161242|20163619
Organism Gossypium raimondii
Position chrChr07: 20161242-20163619  JBrowse»
Reference genome Graimondii_221
Type   e-circRNA
Identification method CIRI
Parent gene Gorai.007G198400
Parent gene annotation NA
Parent gene strand -
Alternative splicing NA
Support reads 16/11
Tissues leaf/ovule
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Gorai.007G198400.3:8
Gorai.007G198400.1:8
Gorai.007G198400.4:8
Gorai.007G198400.2:8
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACTAAGGATACAATGAATTACCATAGGAACAATGACATCATCCTGTCCAGTTCGGCGTAGAAAA
GTATAAGATAGAAGTCCCACGCTCTGTGTTGCTTTGcagtactcatgaaccatctgctttagcc
tattttccagccggacaaacagcgaagacctctcaaaatcctgcttgtcatgtgctggttctat
aaagtcag
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 819
Transcript exons: 20161242-20161353,20161434-20161485,20161914-20162003,20
162250-20162399,20162486-20162593,20162870-20162968,2016
3286-20163414,20163541-20163619
CAGTACTCATGAACCATCTGCTTTAGCCTATTTTCCAGCCGGACAAACAGCGAAGACCTCTCAA
AATCCTGCTTGTCATGTGCTGGTTCTATAAAGTCAGCTTCAAGAACACCAACAACACCATTCCC
TATCACAGAGCCATCACTTTTCACTTTCCAGAAGGGCCTGATAAGGCGATTTTTATGGTATACA
TTAAATCCCGAAACATTTGTAGGGGTCTCCTTTATAAATCCAATGGTAGTTTCCACTGAACACT
CTTTTGATCCAGCAGCTACTTGGGGTTTGTATGTTACAACCTTTGGATATTGTAACTCGTCAGC
GATATTGAACTGTTGGACAGGTTTCCCCCTTAATATGATCTGGAAGTTATTGAATTTTCTGAGG
TATAGCATTGAAGCATATGCCCTCAGTGAATACCGGAGGCGGTAAGAAATATGGGATTGAAGTT
CAACTGTCTTTTTGAGTACTTTAGTTGTAGCTTCACGAAGAGCTTCATCTCTCAGTCGAATGTC
CTCATCATCATCATCAAAAGCCAGTTCATATATGCCTTCATCATTCAGCCATAAGTTGTATATT
ATTATTTTTGTTCCATGTGGTCCAATATCATCAAACTGTAGCAGCAGATCCTCCTTTAATGAAA
AGGGAGACCATTCCAAGATAGTTTTCAAGTTAGAAGACCAATCATCGTGTGTGCTGTAAATTAT
TGGCTCTGCCCAATGACCAGAAATATCAAAATCAATCATAGGAACAATGACATCATCCTGTCCA
GTTCGGCGTAGAAAAGTATAAGATAGAAGTCCCACGCTCTGTGTTGCTTTG

Genomic sequence CAGTACTCATGAACCATCTGCTTTAGCCTATTTTCCAGCCGGACAAACAGCGAAGACCTCTCAA
AATCCTGCTTGTCATGTGCTGGTTCTATAAAGTCAGCTTCAAGAACACCTGCAATATAAGCAAT
GCAACCATAAATAACATAAATTGAGAGAATACCTAACAAGAAATTTAGAGAAAAAGTATATTAC
CAACAACACCATTCCCTATCACAGAGCCATCACTTTTCACTTTCCAGAAGGGCTGCATCAATGT
GAACAAACTTGTCAGATCAGTACCATAATCAAGTATGTCAAAAGTTTTCAAAACATGCAGAACA
CCATGTCATACAATTGGCGGTAAGTCCTTGAAATAGCTTTAAATTCCAAGTTATCAGACTTTCA
AGCAAACTTGAACTCACTGAAATTAGATGCACTAGTGTCAGCACTCACCACTATCTTCCATGCT
TACGCAAAGTTTAGAACCTTAAGTTTCATAAACATTCAAATTTAAAACCTTTTATTCATAGAGG
ATTAAATATACTGATCCAGTCTGATGTAAGATCATCATAAATCACAAATGAAAAGATCAAATGA
TGAAAAGATAAAAAGTCTATCAAATAAAAAAAGATAAGATAAAAAGAAATATAATTAACCAAAA
AAAGAGATCAAATGAGCAGTATAAAAACATACCCTGATAAGGCGATTTTTATGGTATACATTAA
ATCCCGAAACATTTGTAGGGGTCTCCTTTATAAATCCAATGGTAGTTTCCACTGAACACTACAT
TAGAAGAAGAATTCCATAAGTTTCCCAAGTAAAAATCACCTCTAAAGGACCACTAATGGAATTA
AATTTGAAGGTCAAAACCTTGAATATAATGATAGCAGAGAATAGAAGCAATACAAAGTAATAGG
GAGACTACAACACAAATCTCAGCACAATTATAACATGTAATGCAGAACAAAGAAGTGGGAAAAG
GAATTTATTTCACACAGAACAGAAGATATCTTAGCAACTTATACTTACCTCTTTTGATCCAGCA
GCTACTTGGGGTTTGTATGTTACAACCTTTGGATATTGTAACTCGTCAGCGATATTGAACTGTT
GGACAGGTTTCCCCCTTAATATGATCTGGAAGTTATTGAATTTTCTGAGGTATAGCATTGAAGC
ATATGCCTAGGCAGAGAAAAGAGTTATAAGTTCAAGCATGTGGTAGCTAGCAGTTGAAACTAAA
CAAAAAATGTCCAAAGTTAACAGGTTACCCTCAGTGAATACCGGAGGCGGTAAGAAATATGGGA
TTGAAGTTCAACTGTCTTTTTGAGTACTTTAGTTGTAGCTTCACGAAGAGCTTCATCTCTCAGT
CGAATGTCCTTTTTAAAAATAACATAGAAAAATAGTAAAAGCCTTGAGGTTAAACTTCTTATGT
CTATAAAATATAAACAAATGTACATCAACCTATTAGAAACAGTGAGGACAGGATGATCAAAAGA
TTTCTTTCATAAGTAAAGGCATTGAAGATCCAATAACTAGGTCTGAGCAGAAACACACAAATGC
TGGAAAATTTTGCTTCTCACAGTATATTACTAAAATTATACTACAAGAAAAATCTCAGACAGAT
CTCATAGCTTACAGCACCATGCACATACCTCATCATCATCATCAAAAGCCAGTTCATATATGCC
TTCATCATTCAGCCATAAGTTGTATATTATTATTTTTGTTCCATGTGGTCCAATATCATCAAAC
TGGAATACAGGGAGAAAAAATTCTAGTTAGAAAAAAAAATTGCTCACACAGTGCTAGACTACTG
CAACTTAGCTGCTCTTCTAGTACTTTACGCAACTTTATTTGCAGTTTGAAAGGCAATCAAAAAA
ATTTCCAAGGAAGTAATTGCATCAGTACCAGAATGACCTTTGTATTTCTAATTCCTTTCCATGT
AAGAATACAACCATAGTGCCAAACAATATTGAAATTTGAACATGTTATGCATGTAGTTTAGAAT
TCAACTGGGCAAATCATCATGAAGCTCCTGAACAGGCCTAACAAAACTTAGTTGCCAAACCTGT
AGCAGCAGATCCTCCTTTAATGAAAAGGGAGACCATTCCAAGATAGTTTTCAAGTTAGAAGACC
AATCATCGTGTGTGCTGTAAATTATTGGCTCTGCCCAATGACCAGAAATATCAAAATCAATCTG
CAAACAGAAGTGAAACAAAAAGCAATTGAGTTGTGGACATTAGGAGTTAATCCAAATCCTCAAA
CCTAACTCCTTCAAGGGACAAGGAAAAGAATCCAAAATACTAAGGATACAATGAATTACCATAG
GAACAATGACATCATCCTGTCCAGTTCGGCGTAGAAAAGTATAAGATAGAAGTCCCACGCTCTG
TGTTGCTTTG
Conservation Information
Conserved circRNAs NA
PMCS 0.768257555
Functional Information
Coding potential Y
Potential coding position 20163544-20161244(-)
20161252-20163542(-)
Potential amino acid sequence MIDFDISGHWAEPIIYSTHDDWSSNLKTILEWSPFSLKEDLLLQFDDIGPHGTKIIIYNLWLND
EGIYELAFDDDDEDIRLRDEALREATTKVLKKTVELQSHISYRLRYSLRAYASMLYLRKFNNFQ
IILRGKPVQQFNIADELQYPKVVTYKPQVAAGSKECSVETTIGFIKETPTNVSGFNVYHKNRLI
RPFWKVKSDGSVIGNGVVGVLEADFIEPAHDKQDFERSSLFVRLENRLKQMVHEYCKATQSVGL
LSYTFLRRTGQDDVIVPMIDFDISGHWAEPIIYSTHDDWSSNLKTILEWSPFSLKEDLLLQFDD
IGPHGTKIIIYNLWLNDEGIYELAFDDDDEDIRLRDEALREATTKVLKKTVELQSHISYRLRYS
LRAYASMLYLRKFNNFQIILRGKPVQQFNIADELQYPKVVTYKPQVAAGSKECSVETTIGFIKE
TPTNVSGFNVYHKNRLIRPFWKVKSDGSVIGNGVVGVLEADFIEPAHDKQDFERSSLFVRLENR
LKQMVHEYCKATQSVGLLSYTFLRRTGQDDVIVPMIDFDISGHWAEPIIYSTHDDWSSNLKTIL
EWSPFSLKEDLLLQFDDIGPHGTKIIIYNLWLNDEGIYELAFDDDDEDIRLRDEALREATTKVL
KKTVELQSHISYRLRYSLRAYASMLYLRKFNNFQIILRGKPVQQFNIADELQYPKVVTYKPQVA
AGSKECSVETTIGFIKETPTNVSGFNVYHKNRLIRPFWKVKSDGSVIGNGVVGVLEADFIEPAH
DKQDFERSSLFVRLENRLKQMVHEYCKATQSVGLLSYTFLRRTGQDDVIVPMIDFDISGHWAEP
IIYSTHDDWSSNLKTILEWSPFSLKEDLLLQFDDIGPHGTKIIIYNLWLNDEGIYELAFDDDDE
DIRLRDEALREATTKVLKKTVELQSHISYRLRYSLRAYASMLYLRKFNNFQIILRGKPVQQFNI
ADELQYPKVVTYKPQVAAGSKECSVETTIGFIKETPTNVSGFNVYHKNRLIRPFWKVKSDGSVI
GNGVVGVLEADFIEPAHDKQDFERSSLFVRLENRLKQMVHEY(-)
MSTAKQHRAWDFYLILFYAELDRMMSLFL*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhao et al., 2017b