Detail information of AT2G05380_circ_g.4


General Information
CircRNA Name AT2G05380_circ_g.4
ID in PlantcircBase ath_circ_012850
Alias NA
Organism Arabidpsis thaliana
Position chr2: 1967684-1967942  JBrowse»
Reference genome TAIR10.38
Type   ue-circRNA
Identification method circRNA_finder, find_circ
Parent gene AT2G05380
Parent gene annotation glycine-rich protein 3 short isoform
Parent gene strand +
Alternative splicing 2_circ_ag.3 AT2G05440_circ_g.1 2_circ_ag.2 2_circ_ag.3 AT2G05440_circ_g.4 AT2G05440_circ_g.5 AT2G05440_circ_g.6 AT2G05440_circ_g.7 AT2G05440_circ_g.8 AT2G05440_circ_g.9 AT2G05440_circ_g.10 AT2G05440_circ_g.11 AT2G05440_circ_g.12 AT2G05440_circ_g.13 AT2G05440_circ_g.14 AT2G05440_circ_g.15 AT2G05440_circ_g.16 AT2G05440_circ_g.17 AT2G05440_circ_g.18 AT2G05440_circ_g.19 AT2G05510_circ_g.1 AT2G05510_circ_g.2 AT2G05510_circ_g.3 AT2G05510_circ_g.4 AT2G05510_circ_g.5 AT2G05510_circ_g.6 AT2G05510_circ_g.7 AT2G05510_circ_g.8 AT2G05510_circ_g.9 AT2G05510_circ_g.10 AT2G05510_circ_g.11 AT2G05520_circ_g.1 AT2G05520_circ_g.2 AT2G05520_circ_g.3 AT2G05520_circ_g.4 AT2G05520_circ_g.5
Support reads 4
Tissues whole_plant
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered AT2G05380.2:1
AT2G05380.1:1
AT2G05380.3:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CATGAGTGTACGATTTCATTTATATATACACTTACGTGTGTATGTGATATGACAATACACTTAC
GTTTGTAATGAAGTGCCTTAAGTTTAAGAGGAGAAAgataccaaggaggcggtgggcgacaagg
aggagggggaagttactgccgccacggctgctgctacaaaggttaccatggctgctcaaggtgt
tgttcata
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GATACCAAGGAGGCGGTGGGCGACAAGGAGGAGGGGGAAGTTACTGCCGCCACGGCTGCTGCTA
CAAAGGTTACCATGGCTGCTCAAGGTGTTGTTCATATGCCGGAGAAGCGGTTCAGACTCAGTCT
GGTCACTAAATCTACATAATATATCAACCACCATGAGTGTACGATTTCATTTATATATACACTT
ACGTGTGTATGTGATATGACAATACACTTACGTTTGTAATGAAGTGCCTTAAGTTTAAGAGGAG
AAA
Conservation Information
Conserved circRNAs NA
PMCS 0.139317182
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017