Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d035802_circ_g.1 |
ID in PlantcircBase | zma_circ_008918 |
Alias | zma_circ_0002475 |
Organism | Zea mays |
Position | chr6: 50785889-50786721 JBrowse» |
Reference genome | AGPv4.38 |
Type | u-circRNA |
Identification method | find_circ |
Parent gene | Zm00001d035802 |
Parent gene annotation |
Phenylalanine--tRNA ligase beta subunit cytoplasmic |
Parent gene strand | + |
Alternative splicing | NA |
Support reads | NA |
Tissues | leaf, root |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Zm00001d035802_T003:4 Zm00001d035802_T007:4 Zm00001d035802_T005:4 Zm00001d035802_T002:4 Zm00001d035802_T004:4 Zm00001d035802_T001:4 Zm00001d035802_T008:4 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.155089096 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
50785896-50786718(+) 50786670-50785943(+) 50785956-50786658(-) 50785898-50786603(-) |
Potential amino acid sequence |
MFSEYCETKFEVEPVEVIHHDGRKTVYPDLSCYKMDVLLSDILGPIGISQDEKQVVCLLNKMQL QAESHSLKGEARISVSVPPTRSDILHARDLSEDVAIAYGFNNVPKSKPKCMTIGGRQPLNRFSD KIRAEVARAGYMEVLTFILSSHEENFDMLNRTDDKSKAVIIANPRTSEFEVTMFSEYCETKFEV EPVEVIHHDGRKTVYPDLSCYKMDVLLSDILGPIGISQDEKQVVCLLNKMQLQAESHSLKGEAR ISVSVPPTRSDILHARDLSEDVAIAYGFNNVPKSKPKCMTIGGRQPLNRFSDKIRAEVARAGYM EVLTFILSSHEENFDMLNRTDDKSKAVIIANPRTSEFEVTMFSEYCETKFEVEPVEVIHHDGRK TVYPDLSCYKMDVLLSDILGPIGISQDEKQVVCLLNKMQLQAESHSLKGEARISVSVPPTRSDI LHARDLSEDVAIAYGFNNVPKSKPKCMTIGGRQPLNRFSDKIRAEVARAGYMEVLTFILSSHEE NFDMLNRTDDKSKAVIIANPRTSEFEVTMFSEYCETKFEVEPVEVIHHDGRKTVYPDLSCYKMD VLLSDILGPIGISQDEKQVVCLLNKMQLQAESHSLKGEARISVSVPPTRSDILHARDLSEDVAI AYGFNNVPKSKPKCMTIGGRQPLNRFSDKIRAEVARAGYMEVLTFILSSHEENFDMLNRTDDKS KAVIIANPRTSEFE(+) MTKVKQSLLQTLALLNSRLPCSLNIVRLNLKWNLLK*(+) MMYHFNRFHFKFSLTIFREHGNLEFRSARVCNNDCFTFVICPV*(-) MVTSNSEVRGFAIMTALLLSSVLFNMSKFSSCEDKINVSTSI*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ma et al., 2021b |