Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT1G06840_circ_g.2 |
ID in PlantcircBase | ath_circ_001061 |
Alias | Ath_circ_FC0221 |
Organism | Arabidpsis thaliana |
Position | chr1: 2098943-2099626 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | PcircRNA_finder |
Parent gene | AT1G06840 |
Parent gene annotation |
Probable LRR receptor-like serine/threonine-protein kinase At1g0 6840 |
Parent gene strand | - |
Alternative splicing | AT1G06840_circ_g.3 |
Support reads | 10 |
Tissues | inflorescences |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | AT1G06840.1:3 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.200361684 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
2099517-2098945(-) |
Potential amino acid sequence |
MRKRMRGYSAVARRKRSSKASLKIEGVKSFTYAELALATDNFNSSTQIGQGGYGKVYKGTLGSG TVVAIKRAQEGSLQGEKEFLTEIELLSRLHHRNLVSLLGFCDEEGEQMLVYEYMENGTLRDNIS VFPSASPSGLSNGAVAGIVLGSVAAAVTLTAIIALIIMRKRMRGYSAVARRKRSSKASLKIEGV KSFTYAELALATDNFNSSTQIGQGGYGKVYKGTLGSGTVVAIKRAQEGSLQGEKEFLTEIELLS RLHHRNLVSLLGFCDEEGEQMLVYEYMENGTLRDNISVFPSASPSGLSNGAVAGIVLGSVAAAV TLTAIIALIIMRKRMRGYSAVARRKRSSKASLKIEGVKSFTYAELALATDNFNSSTQIGQGGYG KVYKGTLGSGTVVAIKRAQEGSLQGEKEFLTEIELLSRLHHRNLVSLLGFCDEEGEQMLVYEYM ENGTLRDNISVFPSASPSGLSNGAVAGIVLGSVAAAVTLTAIIALIIMRKRMRGYSAVARRKRS SKASLKIEGVKSFTYAELALATDNFNSSTQIGQGGYGKVYKGTLGSGTVVAIKRAQEGSLQGEK EFLTEIELLSRLHHRNLVSLLGFCDEEGEQMLVYEYMENGTLRDNIS(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017;Chen et al., 2017a |