CircRNA Name |
AT1G08550_circ_g.4 |
ID in PlantcircBase |
ath_circ_001419 |
Alias |
At_ciR267, AT1G08550_C3 |
Organism |
Arabidpsis thaliana |
Position |
chr1: 2707424-2707921 JBrowse» |
Reference genome |
TAIR10.38 |
Type |
ue-circRNA
|
Identification method |
CIRCexplorer, CIRI-full, KNIFE, PcircRNA_finder, circRNA_finder, find_circ, CIRI2 |
Parent gene |
AT1G08550 |
Parent gene annotation |
NPQ1 |
Parent gene strand |
+ |
Alternative splicing |
AT1G08550_circ_g.1 AT1G08550_circ_g.2 AT1G08550_circ_g.3 AT1G08550_circ_g.5 |
Support reads |
16/47/5 |
Tissues |
leaf/leaf, inflorescences, whole_plant/seedlings |
Exon boundary |
Yes-Yes
"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
|
Splicing signals |
GT-AG
The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
|
Number of exons covered |
AT1G08550.3:2 AT1G08550.1:2 AT1G08550.2:2
|