Detail information of AT2G04560_circ_g.2


General Information
CircRNA Name AT2G04560_circ_g.2
ID in PlantcircBase ath_circ_012798
Alias At_ciR5714
Organism Arabidpsis thaliana
Position chr2: 1591274-1591694  JBrowse»
Reference genome TAIR10.38
Type   ei-circRNA
Identification method find_circ
Parent gene AT2G04560
Parent gene annotation Probable lipid-A-disaccharide synthase, mitochondrial
Parent gene strand -
Alternative splicing NA
Support reads 2
Tissues leaf
Exon boundary   Yes-No
Splicing signals   CT-AC
Number of exons covered AT2G04560.1:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCCAGAACGACGGTGCGACATAGTGAAAATGCACAGAACAATTTTCCAACCGCTGCTGCTTGTA
TCTAGCTGCAAAGCCAAAAAGCATTCCTCCATTGTCcagaaggtattgagtgttcgctaaaact
caagccttcaagtttcagttcctgaggcttgcaccttctcacctgtggcagaaaagagcaccat
ttcactta
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CAGAAGGTATTGAGTGTTCGCTAAAACTCAAGCCTTCAAGTTTCAGTTCCTGAGGCTTGCACCT
TCTCACCTGTGGCAGAAAAGAGCACCATTTCACTTAGAATTCTGACAGAGTGTCATAGAAACTG
AGGTAATTCAAGAAGAAGAAGAAGAAAACGCATACAAGGTCGAACTCAGAAGCATCCTCAAGAA
CAGGATGTCCAACAAACGTTGCTTCAACCCCATGCTCCCTACAAACCCTTTCCTCGTTCGGAAG
AATGCAGAAAAGATGATCAACGAATTCAGACAGACCTCCAAGTCTTGACTCTCCTCCTTTCCAA
GCCCAGAACGACGGTGCGACATAGTGAAAATGCACAGAACAATTTTCCAACCGCTGCTGCTTGT
ATCTAGCTGCAAAGCCAAAAAGCATTCCTCCATTGTC
Conservation Information
Conserved circRNAs NA
PMCS 0.18933173
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015