Detail information of BGIOSGA032585_circ_g.3


General Information
CircRNA Name BGIOSGA032585_circ_g.3
ID in PlantcircBase osi_circ_008812
Alias Chr10:5589751_5590074(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr10: 3994707-3995030  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRCexplorer2
Parent gene BGIOSGA032585
Parent gene annotation NA
Parent gene strand +
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   GT-AA
Number of exons covered BGIOSGA032585-TA:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GAACCACAAACATCCAACCGTTCTAAGCGCAAAATGAAAGTCCGGAAGAATAGAAGTACAACTG
TAAATGAAAGACCAGTGGAGAAAGCATGGAAGAATCggtgagagcaagctgacctctcaagatg
aaggggaagtcgggaagagcaaaagtaaatctgtaaatgaaaggccattgaagaaagcatcgaa
aaaccgta
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGTGAGAGCAAGCTGACCTCTCAAGATGAAGGGGAAGTCGGGAAGAGCAAAAGTAAATCTGTAA
ATGAAAGGCCATTGAAGAAAGCATCGAAAAACCGTATGATCTCTCTGTCAATTTCGATTTTAAA
ATTATTTGATTAAGGAAGTGGTTATCAATAATAATTCACCAATGTAAACTACTGAAAGGTGATG
ACGTTAAGCTGCCTTCGCAAAGTGGTTTGGAAGAACCACAAACATCCAACCGTTCTAAGCGCAA
AATGAAAGTCCGGAAGAATAGAAGTACAACTGTAAATGAAAGACCAGTGGAGAAAGCATGGAAG
AATC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021