Detail information of BGIOSGA034107_circ_g.3


General Information
CircRNA Name BGIOSGA034107_circ_g.3
ID in PlantcircBase osi_circ_008952
Alias Chr11:11658628_11658892(ZS97RS2), Chr11:11965500_11965764(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr11: 10146178-10146442  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ, find_circ
Parent gene BGIOSGA034107
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA034107_circ_g.2 BGIOSGA034107_circ_g.4
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-No
Splicing signals   CT-AA
Number of exons covered BGIOSGA034107-TA:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTTGAGGTGTTTCTGTTCTTCTTTGCTGCACAGTTCTGGTTCTTCGACTTCTTTGTTTTACTTA
ATGTATCTTCTGTTGCCCCTATACTTGGCACAGAACccttcgccatccatatcaagcccatctg
catcttttgaggtgtttttattcttatttactgcactgttctggttctttgacttctttatttg
tctcgatg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTTCGCCATCCATATCAAGCCCATCTGCATCTTTTGAGGTGTTTTTATTCTTATTTACTGCAC
TGTTCTGGTTCTTTGACTTCTTTATTTGTCTCGATGTATCAACTGTTGCCCCTTTACTTGGCAC
AGAACCTTTGTCATCCATATCAAGCCCATCTGCATCTTTTGAGGTGTTTCTGTTCTTCTTTGCT
GCACAGTTCTGGTTCTTCGACTTCTTTGTTTTACTTAATGTATCTTCTGTTGCCCCTATACTTG
GCACAGAAC
Conservation Information
Conserved circRNAs osa_circ_009152
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021