Detailed infomation of each circRNA
General Information | |
---|---|
CircRNA Name | Os02g0244300_circ_g.1 |
ID in PlantcircBase | osa_circ_014048 |
Alias | Os_ciR5317 |
Organism | Oryza sativa |
Position | chr2: 8136295-8140070 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | ue-circRNA |
Identification method | CIRCexplorer, find_circ |
Parent gene | Os02g0244300 |
Parent gene annotation |
Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 family pr otein. (Os02t0244300-01) |
Parent gene strand | + |
Alternative splicing | NA |
Support reads | 3/3 |
Tissues | root/root |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Os02t0244300-01:8 |
Conservation Information | |
---|---|
Conserved circRNAs | NA |
PMCS | 0.113993017 |
Functional Information | |
---|---|
Coding potential | Y |
Potential coding position |
8136375-8136366(+) 8136377-8138866(-) |
Potential amino acid sequence |
MLQPRESDVPVLFVVFIVLPVIAYFLLGRWHDAVSKKARVSVLAQRAAEETFKVETMATPDVIL PGPSLRPMPYMRSAPSARPEYHECATCHGPAKTRCSRCKSVRYCSGKCQIIHWRQGHKQTCQQW NGFGTSSSGGLPPTENTEQMPFLSNLNSPLRGSDVHLHDMDFDTMSEPSFVTTDSYNLDTSPFL SDRSNMNKPNQFLHTSENGAAIGSYEKNDYSIDGEVPSSEILSGNKGLNNSSGSGENCGNRDVI YPLNSVVHQPNNYAPEIRKRPKASITVYESDKGVYLTSDMISSGEGPYASAAESLQRSNSSGNV TGKGNMIHKKPPYPSGKVSSSQKSQEKVLTSHQYDGHEKNPHNKNEQRSTKTAVSTNSSLQGCN GISKAGASKVEALKKPSKFLKTSLVGLINDNKRSKVLFPYEDLVKFFQYEVRGISPRGLFNCGN SCYANAVLQCLMCTKPLMIYLLLRLHSKDCCSKNWCLMCELEQYASTLRESGGPVSPSRILSNL RNIGCRLGGGSQEDAHEFLRHLVMSMQGACLDGLGGEKQVEASLQETTLIQQMFGGRLKSKVNQ QFGMIFQAEAENYRSWMIIFC*(+) MSLTEYYHPTSIILCFSLKNHSKLLIDLRFKTATKHLLYQCSFLQACFYLLLTTKSIQACPLHR HHKMP*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
---|---|
References | Ye et al., 2015;Chu et al., 2017 |