Detail information of Os02g0244300_circ_g.1


General Information
CircRNA Name Os02g0244300_circ_g.1
ID in PlantcircBase osa_circ_014048
Alias Os_ciR5317
Organism Oryza sativa
Position chr2: 8136295-8140070  JBrowse»
Reference genome IRGSP-1.0.38
Type   ue-circRNA
Identification method CIRCexplorer, find_circ
Parent gene Os02g0244300
Parent gene annotation Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 family pr
otein. (Os02t0244300-01)
Parent gene strand +
Alternative splicing NA
Support reads 3/3
Tissues root/root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os02t0244300-01:8
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGCATGCCTGGATGGACTTGGTGGTGAGAAGCAGGTAGAAGCAAGCTTGCAGGAAACTACACTG
ATACAGCAGATGTTTGGTGGCCGTCTTAAATCGAAGgtcaatcagcaatttggaatgatttttc
aagctgaagcagagaattatcgaagttggatgataatattctgttagggacatgctccaaccaa
gggaatcc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTCAATCAGCAATTTGGAATGATTTTTCAAGCTGAAGCAGAGAATTATCGAAGTTGGATGATAA
TATTCTGTTAGGGACATGCTCCAACCAAGGGAATCCGATGTGCCTGTACTATTTGTTGTATTTA
TTGTACTTCCGGTGATAGCTTATTTTCTTCTTGGAAGATGGCATGATGCTGTAAGTAAGAAGGC
ACGGGTAAGTGTGCTGGCCCAGCGAGCTGCAGAAGAAACCTTCAAGGTGGAAACAATGGCGACT
CCAGACGTTATATTGCCAGGACCTTCTTTAAGACCCATGCCTTATATGAGATCTGCACCTTCTG
CAAGACCCGAATACCATGAGTGTGCTACTTGCCACGGGCCTGCTAAGACTCGCTGCTCCAGATG
CAAGTCTGTTAGATACTGGTAAGATACTCTGTTTCTCTTCTCCATCATGTGCTGTCTATTCATT
ATAATCAATCTGTGTACCAAATAAACTGTGCCCCTCGCATGCTATTGAGTATTGAAATATGGTA
ACTATTACTCTTTTATGTCCTTAATAGTACCGTAGTAGGTATTTGGAAGTGGCAATTTGACTGT
ATATGACTATAGCAATTCTGATAACCTTAACAGCTGGTATTTAAAAAAAAAAAGCTAAATTCAG
TATTTGCCACTCCTCAAGTTGCCCTTGCACCACATCTCTCTCTATCATGTAGCCTATCCACATC
TCTCTCTATCATGTAGCCTATCTGATTGTGTTAATTAATGTACATATTATGACTTTTGATGTTC
AACAGCTCTGGAAAGTGTCAAATAATTCACTGGAGGCAAGGTCATAAGCAAACATGTCAGCAAT
GGAATGGTTTTGGTACTAGCAGCTCTGGTGGACTACCTCCTACTGAGAATACTGAACAGATGCC
ATTCTTAAGTAACCTGAACTCACCTCTTCGAGGGAGCGATGTTCATCTGCATGACATGGATTTC
GATACCATGTCAGAGCCATCCTTTGTGACAACAGATAGCTATAATCTTGATACCAGCCCATTTC
TGTCAGACCGAAGCAACATGAATAAACCAAACCAATTTCTACATACAAGTGAAAATGGTGCTGC
CATTGGATCTTATGAGAAGAACGACTATAGTATTGATGGAGAAGTCCCTTCTTCTGAGATTCTG
TCAGGAAATAAGGTAGCTTAGCCAAGCTCTTAACTACAATTTTCTTTTACAAGATTTGTTTTAA
GTAATCCAATCCATTACATTATCTTTTCAGGGTTTAAATAACAGTTCTGGTTCAGGTGAAAACT
GCGGAAACCGTGATGTAATTTATCCTCTCAATAGTGTGGTACATCAACCCAATAATTATGCCCC
TGAAATAAGAAAGCGGCCCAAAGCAAGCATCACGGTTTATGAATCTGATAAAGGCGTGTATTTA
ACTTCTGATATGATCAGTTCTGGTGAGGGGCCATATGCTTCTGCTGCAGAGTCACTACAAAGAA
GTAACTCGTCTGGAAATGTTACCGGAAAAGGAAACATGATACATAAGAAACCACCATACCCATC
TGGTAAAGTGTCATCATCACAAAAATCACAGGAGAAGGTGTTGACATCACATCAATATGATGGG
CATGAAAAGAATCCCCACAACAAAAATGAGCAAAGTTAGTGCATAATTTCTTTATTGGATAAAA
TGGCCTTGCTTTGTCATATGGTTACTTCGTTGATCTCATATATTTACTACATTTTGCAGGATCT
ACCAAAACAGCTGTTTCAACAAACAGCAGTTTGCAAGGATGCAATGGCATCTCAAAAGCAGGAG
CATCAAAGGTTGAAGCCCTGAAGAAGCCTTCAAAATTTCTCAAAACCAGTCTGGTGGGTTTGAT
CAATGATAACAAGAGGAGTAAGGTTTGAATCATCCACAATATATCTCGAGTTAGTTATTTCAGA
GTTTCTGTATCAAAATGCTGAGGGTATTGTTTCTAAATTGACACTTCAGGTACTGTTCCCATAT
GAAGATCTTGTTAAGTTTTTTCAGTATGAAGTACGGGGCATCTCACCTAGAGGTCTTTTCAATT
GTGGAAATAGGTACTTAACATTGTTCATTGAGTGTTCATTGTAATGAGTTCTGCAAATAACAGA
ACCTAAGAATCTTAACAGAAAATATGACTCTTGTTTCTTCCATTCTCATCTCCATGTTCTAAAC
AATTGTTTGTTCGCATGTCACTATCTGATTGTTATTGCTCCTTTTTTTTGCAGTTGCTATGCAA
ATGCTGTTCTACAATGTCTCATGTGCACAAAACCCCTGATGATCTATCTGCTTCTGAGACTGCA
TTCCAAAGACTGTAATACCAAAACTCAAGCCCCCACCCTCCTTGGTGTAGTTGTGAAATCTCTC
ACCATCTCTGATTTCTTTGACATTGATTGCTTTATTCTTTTAGGTTGCTCAAAGAATTGGTGCC
TCATGTGTGAACTTGAGCAATATGCTTCAACTTTGCGTGAAAGTGGTGGCCCTGTTTCTCCAAG
TAGAATCCTTTCTAATCTGAGGAATATTGGATGTCGCTTGGGTGGTGGAAGTCAAGAAGATGCT
CATGAATTTTTAAGGTGCTGTAACTGTTACATGCTACTTCTAGTTTTCATTTGTGATTGCTTGC
TACCTTTTTTAGGTTGTTCTAGTGATAAGATAACTTCAGTAGAAGTGGGAGTAATGCTTAGGAA
ACCCTGCCAAAACTTCTATTCCACATTATTGCTTCATCACTATCAAAATTTATTGAAATATTTC
CTCATGTAAGAGAAGCAATTTTTGCATACACCTATCCTGGAGCTAAAAGGAATCGTTGCTATTT
GGGGTATGCAAAATAAAAGGGCGAACAAATGCGAAGAACCATGACTCGGAGGGTTCCTTTTTCT
TATTTGAACATGGCCAGTCAGAAGTTAATGAAATTTCTCGACTAACTTGAAATTGATCTAAAAA
GTTCCAAATCTGTTTTTTCTTATGGCCTATTTTGCTTCTGATGATTATATCTTTTTCTTTAAAA
AAGAAAGATTATATCTATTGTTGACTTGTACTTTAGCATAGCTACCTAGTTATTATTTGCCACA
TAAATGGTTTTTTGGCATGGTAATGTGGGGTTGAGAGAAGCGGCCACTGATGCTAGTATAACCA
TTTACTATTTCTTGCTCTAGCCAAAAAATAAAAAATAAAAATCCATAATAGTATGTGCAATGGA
ACTTCATCTGTTGATATTGTTGATCACATTTACGCGCGCACACACACACACACACACTGGTGTG
CTTCAGTTGAAATTTCGTGAAGTTCACATATTTGTCCCTAGCCTTCTTTGATTGGACATGTATT
AAGGGGTGCACTCAGGGTGTGCATGTGTGTTTGAGTTTTCTATGTAACAGGAGAGAAAAAAAAA
GGAATTTCTCCCATTGTCCAAGTGAATAATTGATTACTGTCTCCCTTAAGGCTGTAATCTGGAA
CTGTAATGCACTAATGTATCTGAATATTTGAGTTTTAATGTGTCCTTTTCTAAGAACCTCATGC
TCCAGTATGTTCACGCTCTATGAAATAGATTAATGAAAAAGGGAAATTATAATTGAAGTATTTG
GAATCTGAAAAGAGTTCCATTATTTGTGACCATGCACTCACATTATCCTTGATTTGCTAAATTA
CCAGGCATCTTGTGATGTCTATGCAAGGGGCATGCCTGGATGGACTTGGTGGTGAGAAGCAGGT
AGAAGCAAGCTTGCAGGAAACTACACTGATACAGCAGATGTTTGGTGGCCGTCTTAAATCGAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.113993017
Functional Information
Coding potential Y
Potential coding position 8136375-8136366(+)
8136377-8138866(-)
Potential amino acid sequence MLQPRESDVPVLFVVFIVLPVIAYFLLGRWHDAVSKKARVSVLAQRAAEETFKVETMATPDVIL
PGPSLRPMPYMRSAPSARPEYHECATCHGPAKTRCSRCKSVRYCSGKCQIIHWRQGHKQTCQQW
NGFGTSSSGGLPPTENTEQMPFLSNLNSPLRGSDVHLHDMDFDTMSEPSFVTTDSYNLDTSPFL
SDRSNMNKPNQFLHTSENGAAIGSYEKNDYSIDGEVPSSEILSGNKGLNNSSGSGENCGNRDVI
YPLNSVVHQPNNYAPEIRKRPKASITVYESDKGVYLTSDMISSGEGPYASAAESLQRSNSSGNV
TGKGNMIHKKPPYPSGKVSSSQKSQEKVLTSHQYDGHEKNPHNKNEQRSTKTAVSTNSSLQGCN
GISKAGASKVEALKKPSKFLKTSLVGLINDNKRSKVLFPYEDLVKFFQYEVRGISPRGLFNCGN
SCYANAVLQCLMCTKPLMIYLLLRLHSKDCCSKNWCLMCELEQYASTLRESGGPVSPSRILSNL
RNIGCRLGGGSQEDAHEFLRHLVMSMQGACLDGLGGEKQVEASLQETTLIQQMFGGRLKSKVNQ
QFGMIFQAEAENYRSWMIIFC*(+)
MSLTEYYHPTSIILCFSLKNHSKLLIDLRFKTATKHLLYQCSFLQACFYLLLTTKSIQACPLHR
HHKMP*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015;Chu et al., 2017