Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d045538_circ_g.2 |
ID in PlantcircBase | zma_circ_009883 |
Alias | zma_circ_0003173 |
Organism | Zea mays |
Position | chr9: 25847524-25848360 JBrowse» |
Reference genome | AGPv4.38 |
Type | e-circRNA |
Identification method | find_circ |
Parent gene | Zm00001d045538 |
Parent gene annotation |
Superoxide dismutase |
Parent gene strand | + |
Alternative splicing | Zm00001d045538_circ_g.1 |
Support reads | NA |
Tissues | leaf, root |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Zm00001d045538_T001:3 Zm00001d045538_T002:3 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.203218787 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
25847612-25848357(+) 25847813-25848318(-) 25847545-25848263(-) |
Potential amino acid sequence |
MIGGSEWEGMSLGQMMLASFNEGREQPHPPFFHAAQVWNHDFYWRSMKPGGGGKPPERLLKFIN RDFGSHEGMIRQFMDAALTQFGSGWVWLSYKGSGLPYVKSRSPIPSDNHGRLVISKTPNAINPL VWGHSDALEPYISKETVEQHWGVHQQIHVDRLNGMIGGSEWEGMSLGQMMLASFNEGREQPHPP FFHAAQVWNHDFYWRSMKPGGGGKPPERLLKFINRDFGSHEGMIRQFMDAALTQFGSGWVWLSY KGSGLPYVKSRSPIPSDNHGRLVISKTPNAINPLVWGHSDALEPYISKETVEQHWGVHQQIHVD RLNGMIGGSEWEGMSLGQMMLASFNEGREQPHPPFFHAAQVWNHDFYWRSMKPGGGGKPPERLL KFINRDFGSHEGMIRQFMDAALTQFGSGWVWLSYKGSGLPYVKSRSPIPSDNHGRLVISKTPNA INPLVWGHSDALEPYISKETVEQHWGVHQQIHVDRLNGMIGGSEWEGMSLGQMMLASFNEGREQ PHPPFFHAAQVWNHDFYWRSMKPGGGGKPPERLLKFINRDFGSHEGMIRQFMDAALTQFGSGWV WLSYKGSGLPYVKSRSPIPSDNHGRLVISKTPNAINPLVWGHS(+) MVPYLCGMEEGRMGLLPALIEGGEHHLPQRHAFPLAATDHAIEPVHVNLLVNSPVLLHRLLAYV WLQSIRVAPDKRVDGIWSL*(-) MYGSRASEWPQTRGLMAFGVFEITSLPWLSDGMGLLDFT*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ma et al., 2021b |