Detail information of Os02g0174700_circ_g.2


General Information
CircRNA Name Os02g0174700_circ_g.2
ID in PlantcircBase osa_circ_013413
Alias Os02circ05697/Os_ciR2915
Organism Oryza sativa
Position chr2: 4096078-4099312  JBrowse»
Reference genome IRGSP-1.0.38
Type   u-circRNA
Identification method SMALT, Segemehl, find_circ
Parent gene Os02g0174700
Parent gene annotation Hypothetical protein. (Os02t0174700-01)
Parent gene strand -
Alternative splicing Os02g0174700_circ_g.1
Support reads 2/4
Tissues leaf and panicle/root
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered Os02t0174700-01:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATTATCTAAAGACGTACTTGTGGTCATCATCAATTCTGAAGGCAATAGAATTATCAGGCAGACT
AGCAAATGCTTCAACAACAGCTTGTATGGTTACCACctaaagttagtattccacgatgagcttt
cttgagcaggcaaccgagcggaaggcaccaccgccggcgaggctcggctccatcaccaagctga
cggcggca
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 210
Transcript exons: 4096078-4096217,4099243-4099312
CTAAAGTTAGTATTCCACGATGAGCTTTCTTGAGCAGGCAACCGAGCGGAAGGCACCACCGCCG
GCGAGGCTCGGCTCCATCACCAAGCTGACGGCGGCATCGTCGTCCTTCGCCAACCTCTTCTCCA
CCTTCCTCGGGCCAATTCTGAAGGCAATAGAATTATCAGGCAGACTAGCAAATGCTTCAACAAC
AGCTTGTATGGTTACCAC

Transcript length: 213
Transcript exons: 4096078-4096202,4099225-4099312
CTAAAGTTAGTATTCCACGATGAGCTTTCTTGAGCAGGCAACCGAGCGGAAGGCACCACCGCCG
GCGAGGCTCGGCTCCATCACCAAGCTGACGGCGGCATCGTCGTCCTTCGCCAACCTCTTCTCGT
ACTTGTGGTCATCATCAATTCTGAAGGCAATAGAATTATCAGGCAGACTAGCAAATGCTTCAAC
AACAGCTTGTATGGTTACCAC

Transcript length: 231
Transcript exons: 4096078-4096163,4099168-4099312
CTAAAGTTAGTATTCCACGATGAGCTTTCTTGAGCAGGCAACCGAGCGGAAGGCACCACCGCCG
GCGAGGCTCGGCTCCATCACCATGCCTTCTCTGCATCTTGAGCATCACAATTCACATCAGAGAG
GAAATTATCTAAAGACGTACTTGTGGTCATCATCAATTCTGAAGGCAATAGAATTATCAGGCAG
ACTAGCAAATGCTTCAACAACAGCTTGTATGGTTACCAC

Transcript length: 232
Transcript exons: 4096078-4096129,4099133-4099312
CTAAAGTTAGTATTCCACGATGAGCTTTCTTGAGCAGGCAACCGAGCGGAAGCTGGAATGGACC
GAAGAGGAGAGTCTGGCACAATCTGCCTTCTCTGCATCTTGAGCATCACAATTCACATCAGAGA
GGAAATTATCTAAAGACGTACTTGTGGTCATCATCAATTCTGAAGGCAATAGAATTATCAGGCA
GACTAGCAAATGCTTCAACAACAGCTTGTATGGTTACCAC

Transcript length: 263
Transcript exons: 4096078-4096215,4099131-4099183,4099241-4099312
CTAAAGTTAGTATTCCACGATGAGCTTTCTTGAGCAGGCAACCGAGCGGAAGGCACCACCGCCG
GCGAGGCTCGGCTCCATCACCAAGCTGACGGCGGCATCGTCGTCCTTCGCCAACCTCTTCTCCA
CCTTCCTCGGGCCTGGAATGGACCGAAGAGGAGAGTCTGGCACAATCTGCCTTCTCTGCATCTA
TCAATTCTGAAGGCAATAGAATTATCAGGCAGACTAGCAAATGCTTCAACAACAGCTTGTATGG
TTACCAC

Genomic sequence CTAAAGTTAGTATTCCACGATGAGCTTTCTTGAGCAGGCAACCGAGCGGAAGGCACCACCGCCG
GCGAGGCTCGGCTCCATCACCAAGCTGACGGCGGCATCGTCGTCCTTCGCCAACCTCTTCTCCA
CCTTCCTCGGGCCAGTGAGCTCCCCCGAGCCGAGGCCGAGGCGCAGCTTCGACGGCGGCGCCAC
CGGCGTCGGGCTTGGCATCGTCGCGGCCATGAGCCACGCCTGCCTGACGACCGAGGCCGAGCCG
ATCGCCATCGGCGCGGCGGCTCGGCGCCGCGCGAGAGAGGAGGCCGAGCTCTCTGAGAGCTACA
CTTGCGTCATCACGCACGTCGCCGGCGTCGATGGCGCCAGCGGCAGCGTGAGGAAGCGGGTGTA
CTTTGGGTTCGGCGACGGTGGCGGCGGCTGGCTTGTGGAAGCCGACGAGGAGCCGGCGCCGGCG
GCTGACTTCTTGAGCCGGTGCTTCCTGTGTGACAAGAGGCTTGATGGGCTCGACATCTACATGT
ACAGGTAAATAAAATTTCATGCATCATAAAAAATATCAAAATTTTGATGAAAATAGTACTATAT
TGTTTTGACAATATTATACTTATTGGCACCCAAGGTCTACTTTATGGACTATTCTATATATTGC
TTAAAATTTTCAGGAGCTTAAACATTCATTTTGGAATTCTAATTATATTTTTGTATTTATTGGT
AACGTGAACCTGCCATTAACTGCGAAGCACACAGCACCTTAGTATAGGTGGGAAAAAAATTCAA
AAATAGTTATAAGAAGTTCATTATCTTTCCAGAAAGCAATTGGAAATGCCAAATATCATACATG
ATACATTTTACCTTCTAAGTTTTACCTAGTATTTTTTTTTATTTCTAGCTTTTTGGTTGAAGAG
GATGTTACGGTTTTGTCTTCCTAAAAGATTAATAGAGTATGTAGTTTGTAGCTTTTTAATTATA
GTGAAGTTGCTTTGTTTATGGAAGACAGCTAACCTGCAATACATGTAAAAAGTATATAGTATAT
AAGTCTCTAGTCAATCAGAAATAACTAGTGGACATACACCAGATCAATATACAATGTTATATAA
CATGGATCCATCATAACCGTGCTTATGTTTTCTTCTTTTTCCTGTGATTAGCATGATAATCTCT
AGCCTAAAGAGTGAAAGTGAAGACTTTTCCCTGTTGCTTCAATAAATAACAGATCATATTTTAT
TCTCCCTTTTAACTCAATTCAAAACATATTCAATGTAGAATGGGATCATCACTAAAACAACAAG
TTCACCAATCACATTTTTAGATGTCACACATTGCTTTGCAATATTACTAGTACTCGTTAAACAT
TGGAATTGTCAAAAGTGAGAAAAAGTAGAGCAACCACTTACGTCATTGTGCATGTCTCAAACCT
GTAGGGGGGAGAAAGCCTTCTGCAGCTCCGAGTGCAGGTGCCACCAGATGCTAATGGACGACCA
TGCAGACAACTGTGGATCTGAAGCCCTCAAGGCCAACGACTACTCGGCCTCGCCGCACTCTGCG
CCATTGCCCTTCTCCCTCAGCGTCGCAGCTGCCTAGTCGATCGAATAATCGACTGCATGATGTA
GCACCGTCAGGCTGCTCTTCAATTCTGTAGCAGCAAAGAAATATATAGAGAGAGGTCAAAGAGA
TCATTTAATTAAGCGGATGAAACATATAAAGAGTAATCACTAGAATGCTTCTTAACTGTGGCTT
GAATAAAAAAAAATGGAGAGGATTCTCACACTAAAGAAACAGATTAAACAGATGAAGAAAGTTT
TGAGATTATATGCTCACCGCAAGACACTGGAAACTTCGTGCTTGCAATATTATGTACGAGCAGA
AGTAATTAGTAAAGGAATTTGATGTTATGTTCTCTTCTGAAATTTCAGTAAGAGAGAGTGTATT
ACATATCAGGTGCATAATTGGCTCAGGTAAAAGTTTTATGGTCTAGACGACAGATTTGTTCTAA
TGAATAACCGAATTTCAGTATTTCAACTTCCAGTTCTAATTAAGCACTGGTAAATAACACCAGA
ATCTGATTTCTAGAGGCAAATTTTGAGTTGCAGATGAGATCCATCTAAGTTACAGATTGTCACA
AAAAAACATTGCCTCATCTATCCCAACCACAATTTGCCTCTAGAAAATTGTCATTCTTGCATCT
ATGTGGACCATATGGTCCATGCATGTGCAGGCACATTATTTTCATATCTCGTAGAGTGTACTAG
GTGCCTAGGTAAGATCAACTTGCAACTTTGACCATTCTTGCTCACGTACACTATGGCAGTATCA
CAGATGTTGATGCATCAGGAAAACACCAGGTCATAAAACCTGAATCTTAGTGACATCACTTGGG
AGTTGGGACCATCCATTACACAGCAGTATTGGTATGAGCATGCAAGAAAGCTTACCATTTATCA
AACAAACAAGATAATAAGTCTGCAGTTGTTCTTACTAATGTATTGCCCTATTTTGCTACTCCCT
CCGTCCAATTTTATAGAACGTTTTTTTTTAATTTGGTGTAGTCTTCAAATTAAACTTTAACCAT
TAATTTCTCTTACAATATATTTTCAATGGCCACAAAACCAATATCGTGTAAAAACACTCTCAAA
TACGAATTTATTAATATAAATTTTATAGACTAAACAGGAATAAAATTTGACTAATTGTTGGCCA
AAACTTGAAGACTTTGGGGTTCTTTTTTCAACTACGCCCAATGCTTATACAAACTGAAGAGGGG
TAGAATTTTTTGTACTTCTTTTGACAGAAATAACAGTTTTTAATCCCTGGTTGTAAGTCATCAG
GTGTACACAAAAAGGTAGCAACAGTGCGGTACTAAAAATGTCCGGGAGGCACGTGCCAATGTAG
GCTGCTTTCATACTGACCTGGCACAGAATTTGCTCCCAGGAATAGTTTCTTGGTGGAATACGAG
AAGCTTGGATGTGATCTTGCCATCTGTGGAATTAGATTCTATGGCCATTCACTCCATATCAAGA
CCACGTTGAGCACCATTTGATTCACTCGATCAGCAGCAAACAGTAGCCTGGAATGGACCGAAGA
GGAGAGTCTGGCACAATCTGCCTTCTCTGCATCTTGAGCATCACAATTCACATCAGAGAGGAAA
TTATCTAAAGACGTACTTGTGGTCATCATCAATTCTGAAGGCAATAGAATTATCAGGCAGACTA
GCAAATGCTTCAACAACAGCTTGTATGGTTACCAC
Conservation Information
Conserved circRNAs osi_circ_012575
PMCS 0.469011344
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Lu et al., 2015;Ye et al., 2015