Plant Circular RNA Database

Detail information of Os09g0266400_circ_g.2

			
						 General Information
					
						CircRNA Name
						Os09g0266400_circ_g.2
					
						ID in PlantcircBase
						osa_circ_038663
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr9: 5009196-5013928  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							Os09g0266400						
					
						Parent gene annotation
						
							PGAP1-like family protein. (Os09t0266400-01)
							
						Parent gene strand
						+
					
						Alternative splicing
						
							Os09g0266400_circ_g.1 						
					
						Support reads
						1
					
						Tissues
						shoot
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os09t0266400-01:8

General Information
CircRNA Name	Os09g0266400_circ_g.2
ID in PlantcircBase	osa_circ_038663
Alias	NA
Organism	Oryza sativa
Position	chr9: 5009196-5013928 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	CIRCexplorer
Parent gene	Os09g0266400
Parent gene annotation	PGAP1-like family protein. (Os09t0266400-01)
Parent gene strand	+
Alternative splicing	Os09g0266400_circ_g.1
Support reads	1
Tissues	shoot
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os09t0266400-01:8

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							TTTTCTGTGAGCCTTGGTCTTCTACCAGTTATATTATCTTTGAGAACTGCTGGATGTGGAGTAA
AAGCTACTGGCGACCAATTGGAAGCTGAGAAAAATAgtaccctcccattgctctgcagccatct
ctgggtcagttttttttgcatgtcaatgaagaatggagaaatggatacaagacagggttatcac
gcaccagc

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							GTACCCTCCCATTGCTCTGCAGCCATCTCTGGGTCAGTTTTTTTTGCATGTCAATGAAGAATGG
AGAAATGGATACAAGACAGGGTTATCACGCACCAGCAGTGCAAAACTCTCAAATGTTGTTGTTG
TCTCTGTAGCTGGAGGCATCCATGATTATCAGGTATCTTTTCTGTTGATAATAAATTTTCATTT
CACATGACAAATCCTATGCAGATCTGGTCATGTGCATGCTCTGAAAATTTGCATCTATGACTGT
TTGTTTGCCAATATGCCATCCACACACTGGGATGGAAATTCCAATCGGAGCTAGAGGGAAAGGA
AAAAAAATACTAGACCATTAGAAAAAAAGTAGACCATGTGTCATATACTGGATCAAGATTATAA
AATTTATTCAGTCCCCTGTAATTTGTCATGTAGCTGCTACATCTCTAAAAGAACAGATGACATG
TATCTCTTAAAGTATTGCAATTAGCTACCACTCTGGAGGTATAAAGTTATTTCATTCCATTTTA
AAATGATTGTATTCCAGATGAAGTTCCATTCATTTTTCTATTTTGGAATTTCCTACAGCACTTA
AAGATAATGGAATTTCATTTGATTTATGATGGTTGATTCAATATCTCAATGATTGTTGCCCGAG
TTTTTGGATCCTTGGATCCTTGACTTCCAATATTGAGCGATTACTTCAAAACATTAGGTATGGT
CGTTCCTTAAAGGCCAATTGAACCTCAAGTTTCCATTCATTCTTATTCAGGTTAGGTCAAAGTT
AGCTTTGCTGGATGGAATTGTACCTTCTACTCATGGTTTTATGGTAGGGAGCTCAAGCATGAAG
AATGTTTGGTTATCCATGGAACATCAGTCTATCCTCTGGTGCAATCAGTTAGTTGTACAGGTCA
AAACTGTGTATTCATGCCAAATTATTCTTTGTGTTGTGCAGTATGTTTCAACAGTTTACTTATG
TTGATTTTAACTTTGTTCAGGTTGCACACACACTTCTTAGTATGGTAGATCCTTTGAATGGACA
GCCATTTTTGAGTTCACAAAAAAGACTTTTTGTATTTGCAAAAATGCTCCAAAGTGCAGTTCCG
CAGTCTTTGAGTTGGGTGGCTCCTGTTTCAGGTGTTAAGCCTCCAAATCTGATTGCAAGTGGTA
ACAAGGAAGCTAGTGGTACGGCTCGTTCTTTCATTCTTTGTTTCTTGCATCCTTTGCACAATGG
CAAATTGATTGCTTAGAAAATGATATATTATGTTAGATGTGTCACCTTTTTTGTAGTTGGTAAG
CTTACCTGTGTATGGGAAACATTGGTAAAATTATTTGTTTCCAAGTAATAGAATATGATTTTTT
TTTAAAAAATATCCTTGCCACCTTTTCAATATATTGAAAAAGCATATATTTCATTTCTCGTGAA
ATAATTTTTCTACCTGCAAAATTCTGCTCTGCTTTTGAGATAATTCAAATTTATTAACATGGCA
TATTAAATTAGCAATTCTCCAAGTTCTCTTTACAATTTAGTAAACTAATTTTCTCTTCACAACT
TAACAAATAAGCAATTGCATACCCCTCAGATAATAGCAGTACAGACAGGCTAAATGAAACGATT
TTTTTCTTCAAAAAATCAATGGAAGCACTGGATTAGAACCATAATCTAAGAGATCTTCTTAGTA
CATAGTAATGCATGGTAAATAGCCAAGGTCCAATATTGATTGACTCATTTCTAATAGTTTCTAT
ATCCTTCAACAACTATAGATGATTAGAATAGTATGTTTCTTTAATCTTTGTACATGATTCAACC
TAATATAACATTAGCCCATGTAGGTAGTTGTAGGGCATTATCAAATTTAATGGCGTCAAAAACT
CATGTGTTTCTTGTTATCTCAATGTAACATAGTATGTTTATCATAGACTTGCAGCAAAAGGATT
CACTTTCTTGCCCTCCATCTCTTCAATGGACAAGTGATGGCCTTGAAAAGGACCTGCATATTCA
GTTAAATTCAGTTACTGTTTTAGCAATGGATGGCAAGAGAAGATGGTTAGATATTAAAAAACTG
GTAGGTGAAACTGGCTTACTGGTGTAACCAGTGGTTTATTTTGCTGCATGTTGTTGTGAGTTAA
TTAGGGAAGCCTATATATAGTTCTGTTTATATTGATCCTATTAGAAGTATAGATGGAGCAGCTG
CCTGACTGCTTTATTTTTTCTTGTTCAAGGGATCAAATGGCAAAGGGCACTTTGTTTTTGTAAG
TAATCTTTCTCCATGTTCTGGGGTGAGGATTCATTTGTGGCCAGAAAAGGATCATTCATCTGAA
CAAAATGGAGTACCTGCCAGCAAAAAGATAGTGGAAGTTACATCAAAGATGGTCCAAATACCTG
CAGGACCTGCACCAAAACAGGTATTTATAATTCTGAACCACTTGTTTTCCTGCTTGCTGGCATT
CTTACTCTCTGATTCATGTTCACTAGTTTCTCTGTTTCTTCTGCTTAAAATAAATGGCCCAACA
CCTTTGTCTTCTTAAACTATTAACTGCAATTTCTGTCTTATTTCCCTAAATTATGTTAGGACAA
TATGATAGCAAATGGCAGTAATTCTCTTGTGTTGTTCACACTTTACAGTTCCTCCTTCCCTTCG
TCTTATCGGTGCTCGCAGTGCCACTTGTATGTTTATGTAGATTTAATCCAGAAACTGTTGCATG
AGGATTTTTTTTAATTTTCTTGTTCTTTAGCTTTTGACGATGCTAGTATAACACGAGTCATAGC
ATAACTTAACTCCATTACTACAGTTGATTTGCTCTGCTTCATTGCTATCTTGCACATTGCCATC
ATGGTTGTGATAATTACATGCTATGCTTTTGAACAGGTTGAACCTGGGAGTCAAACCGAGCAAC
CACCTCCTACTGCATTTCTTCTGCTTAGTCCAGAAGAAATGAGTGGTTTCCGCTTCATGACTAT
CTCAGTGGCACCTCGACCGGTATTCCCTTGTACCATTCCTGTTTTCTTGTAATTTTTTGCACAA
ACCCCTATTGTGTTCTTGTGCTTCTTCATGCGCATCAACCTTTAGGTGACAGTATCTTGAATTC
CTTCCATCATAATCTATTATAATAAAACTAGTTGCTTTTGATAATAATAATAATAAAAAGTTCA
GGGCTACATAAAAGTGTGAACAAAGATAAGGCTATTGCTGTACTATTGTGATACTAAAACCCCC
CCTGCCCAGCATCAGTTAATTTCTCAGAAATGTATCTGGTGAGATCAGTTGCAGTCAGGCCTTA
TTTATACAATAGTCCACTTTAAATGATAACAATTTCAGGAACTCCTGTTTCATGTTCATCCTAG
ATATGACAAATTGGTTTGTTGCTTTGTTGGCGAACATCTTGCGCGTGACTTAGATAAGCTTTTG
GAAATACCATAATATTTTCTGTTCATTATTAGGATTAATTTTCATGGTGCATATCAATCATTGA
CTCCCTGTGTACTTTTTGGTGGCATCATTTAGTTTAGCACAATATGATTTTTGAAAGGTTCCCT
ATGTAACATCTTTCTAACTGGATATGCAGCTTTCACCTATAAGACATCTTTTTCCATGTTTCCT
GTGTAACATATCCCTTTCTACTTCTCTACACACGCAAATAGAATTCAATCTTATTAGAATAAAT
TTTAAAAAATTACAATTGTTTTGTCAAAACTATCGATATTCATGTATGTTAGAAGGGTGAAAGT
TCTTCTGTGTGATAACATGTATGTGTATTGCATGTTGTCGATCCATCTGTTGTAACAGAATAGG
CGAATATGAAGTTATTAACAAATTTTGAAATTAGAGGGGCATATTTATGTAATGTTGGGAGTAG
TGAAAAGTAGTATTATTTTGGTTATTTTTTGTTCAGTCATCTACGTTGTCCCTTTCATCTGTTG
GCTATGGAAGTACCAAGAAGAAATGTGCAATTTAATATGAAAAAAAGGCCTTTAATGTTGAAAG
AGGATATAGGATTTTGTGTTTGCATGGGAATTGGCCACATACTTGTTCACATTCGCATTGAAGG
TTTGCTGGCTGCGATGACAAGCCATACTGCCATAAAAAAAATAAAATCAAAGATGATTATTTGG
AAAGTTATGGATTCATTGTCTTCTCTAACTTTGATATATAATTGTCATGACTAGTCTGTCTGTC
TGTGCACGTGACCAGTACATTGGAACACTGTCACATCAATGCATTAATGCCCATTTCTGCGATT
CGGTTGCAAACTCTATTGATATCCATCTTGTGGATGTTAAGTATTTTGTCCTGTTTCATGGATA
TAAACTTTTATCAATAGAAATATATTCTAAATGTTTACCTTCCCTGCTGAATTGTTAAAAGTCG
ATGTTATTCTGATCTTCTGTATCCAGACAATTTCAGGTAGACCACCTCCAGCGGCATCTATGGC
AGTAGGACAGTTCTTTAATCCAGAGGAAGGGACGAGTGCACTTTCTGCTGCCCGAATTATTGGC
TCCAGCTATATTCCTGAAGTAATTAATTCTTGCTTACCAAAATATGGATAATGATGTTTGTAAC
TGTATGATATGGATGTGTTGAAACTTAATTTTTTTTTATCTTAGGAAATATTTTTGAAGGAGGA
CCACCCACTGGCTTTAAACTTGTCGTTTTCTGTGAGCCTTGGTCTTCTACCAGTTATATTATCT
TTGAGAACTGCTGGATGTGGAGTAAAAGCTACTGGCGACCAATTGGAAGCTGAGAAAAATA
						
					

			
		

Sequences
Splice junction sequence	TTTTCTGTGAGCCTTGGTCTTCTACCAGTTATATTATCTTTGAGAACTGCTGGATGTGGAGTAA AAGCTACTGGCGACCAATTGGAAGCTGAGAAAAATAgtaccctcccattgctctgcagccatct ctgggtcagttttttttgcatgtcaatgaagaatggagaaatggatacaagacagggttatcac gcaccagc
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	GTACCCTCCCATTGCTCTGCAGCCATCTCTGGGTCAGTTTTTTTTGCATGTCAATGAAGAATGG AGAAATGGATACAAGACAGGGTTATCACGCACCAGCAGTGCAAAACTCTCAAATGTTGTTGTTG TCTCTGTAGCTGGAGGCATCCATGATTATCAGGTATCTTTTCTGTTGATAATAAATTTTCATTT CACATGACAAATCCTATGCAGATCTGGTCATGTGCATGCTCTGAAAATTTGCATCTATGACTGT TTGTTTGCCAATATGCCATCCACACACTGGGATGGAAATTCCAATCGGAGCTAGAGGGAAAGGA AAAAAAATACTAGACCATTAGAAAAAAAGTAGACCATGTGTCATATACTGGATCAAGATTATAA AATTTATTCAGTCCCCTGTAATTTGTCATGTAGCTGCTACATCTCTAAAAGAACAGATGACATG TATCTCTTAAAGTATTGCAATTAGCTACCACTCTGGAGGTATAAAGTTATTTCATTCCATTTTA AAATGATTGTATTCCAGATGAAGTTCCATTCATTTTTCTATTTTGGAATTTCCTACAGCACTTA AAGATAATGGAATTTCATTTGATTTATGATGGTTGATTCAATATCTCAATGATTGTTGCCCGAG TTTTTGGATCCTTGGATCCTTGACTTCCAATATTGAGCGATTACTTCAAAACATTAGGTATGGT CGTTCCTTAAAGGCCAATTGAACCTCAAGTTTCCATTCATTCTTATTCAGGTTAGGTCAAAGTT AGCTTTGCTGGATGGAATTGTACCTTCTACTCATGGTTTTATGGTAGGGAGCTCAAGCATGAAG AATGTTTGGTTATCCATGGAACATCAGTCTATCCTCTGGTGCAATCAGTTAGTTGTACAGGTCA AAACTGTGTATTCATGCCAAATTATTCTTTGTGTTGTGCAGTATGTTTCAACAGTTTACTTATG TTGATTTTAACTTTGTTCAGGTTGCACACACACTTCTTAGTATGGTAGATCCTTTGAATGGACA GCCATTTTTGAGTTCACAAAAAAGACTTTTTGTATTTGCAAAAATGCTCCAAAGTGCAGTTCCG CAGTCTTTGAGTTGGGTGGCTCCTGTTTCAGGTGTTAAGCCTCCAAATCTGATTGCAAGTGGTA ACAAGGAAGCTAGTGGTACGGCTCGTTCTTTCATTCTTTGTTTCTTGCATCCTTTGCACAATGG CAAATTGATTGCTTAGAAAATGATATATTATGTTAGATGTGTCACCTTTTTTGTAGTTGGTAAG CTTACCTGTGTATGGGAAACATTGGTAAAATTATTTGTTTCCAAGTAATAGAATATGATTTTTT TTTAAAAAATATCCTTGCCACCTTTTCAATATATTGAAAAAGCATATATTTCATTTCTCGTGAA ATAATTTTTCTACCTGCAAAATTCTGCTCTGCTTTTGAGATAATTCAAATTTATTAACATGGCA TATTAAATTAGCAATTCTCCAAGTTCTCTTTACAATTTAGTAAACTAATTTTCTCTTCACAACT TAACAAATAAGCAATTGCATACCCCTCAGATAATAGCAGTACAGACAGGCTAAATGAAACGATT TTTTTCTTCAAAAAATCAATGGAAGCACTGGATTAGAACCATAATCTAAGAGATCTTCTTAGTA CATAGTAATGCATGGTAAATAGCCAAGGTCCAATATTGATTGACTCATTTCTAATAGTTTCTAT ATCCTTCAACAACTATAGATGATTAGAATAGTATGTTTCTTTAATCTTTGTACATGATTCAACC TAATATAACATTAGCCCATGTAGGTAGTTGTAGGGCATTATCAAATTTAATGGCGTCAAAAACT CATGTGTTTCTTGTTATCTCAATGTAACATAGTATGTTTATCATAGACTTGCAGCAAAAGGATT CACTTTCTTGCCCTCCATCTCTTCAATGGACAAGTGATGGCCTTGAAAAGGACCTGCATATTCA GTTAAATTCAGTTACTGTTTTAGCAATGGATGGCAAGAGAAGATGGTTAGATATTAAAAAACTG GTAGGTGAAACTGGCTTACTGGTGTAACCAGTGGTTTATTTTGCTGCATGTTGTTGTGAGTTAA TTAGGGAAGCCTATATATAGTTCTGTTTATATTGATCCTATTAGAAGTATAGATGGAGCAGCTG CCTGACTGCTTTATTTTTTCTTGTTCAAGGGATCAAATGGCAAAGGGCACTTTGTTTTTGTAAG TAATCTTTCTCCATGTTCTGGGGTGAGGATTCATTTGTGGCCAGAAAAGGATCATTCATCTGAA CAAAATGGAGTACCTGCCAGCAAAAAGATAGTGGAAGTTACATCAAAGATGGTCCAAATACCTG CAGGACCTGCACCAAAACAGGTATTTATAATTCTGAACCACTTGTTTTCCTGCTTGCTGGCATT CTTACTCTCTGATTCATGTTCACTAGTTTCTCTGTTTCTTCTGCTTAAAATAAATGGCCCAACA CCTTTGTCTTCTTAAACTATTAACTGCAATTTCTGTCTTATTTCCCTAAATTATGTTAGGACAA TATGATAGCAAATGGCAGTAATTCTCTTGTGTTGTTCACACTTTACAGTTCCTCCTTCCCTTCG TCTTATCGGTGCTCGCAGTGCCACTTGTATGTTTATGTAGATTTAATCCAGAAACTGTTGCATG AGGATTTTTTTTAATTTTCTTGTTCTTTAGCTTTTGACGATGCTAGTATAACACGAGTCATAGC ATAACTTAACTCCATTACTACAGTTGATTTGCTCTGCTTCATTGCTATCTTGCACATTGCCATC ATGGTTGTGATAATTACATGCTATGCTTTTGAACAGGTTGAACCTGGGAGTCAAACCGAGCAAC CACCTCCTACTGCATTTCTTCTGCTTAGTCCAGAAGAAATGAGTGGTTTCCGCTTCATGACTAT CTCAGTGGCACCTCGACCGGTATTCCCTTGTACCATTCCTGTTTTCTTGTAATTTTTTGCACAA ACCCCTATTGTGTTCTTGTGCTTCTTCATGCGCATCAACCTTTAGGTGACAGTATCTTGAATTC CTTCCATCATAATCTATTATAATAAAACTAGTTGCTTTTGATAATAATAATAATAAAAAGTTCA GGGCTACATAAAAGTGTGAACAAAGATAAGGCTATTGCTGTACTATTGTGATACTAAAACCCCC CCTGCCCAGCATCAGTTAATTTCTCAGAAATGTATCTGGTGAGATCAGTTGCAGTCAGGCCTTA TTTATACAATAGTCCACTTTAAATGATAACAATTTCAGGAACTCCTGTTTCATGTTCATCCTAG ATATGACAAATTGGTTTGTTGCTTTGTTGGCGAACATCTTGCGCGTGACTTAGATAAGCTTTTG GAAATACCATAATATTTTCTGTTCATTATTAGGATTAATTTTCATGGTGCATATCAATCATTGA CTCCCTGTGTACTTTTTGGTGGCATCATTTAGTTTAGCACAATATGATTTTTGAAAGGTTCCCT ATGTAACATCTTTCTAACTGGATATGCAGCTTTCACCTATAAGACATCTTTTTCCATGTTTCCT GTGTAACATATCCCTTTCTACTTCTCTACACACGCAAATAGAATTCAATCTTATTAGAATAAAT TTTAAAAAATTACAATTGTTTTGTCAAAACTATCGATATTCATGTATGTTAGAAGGGTGAAAGT TCTTCTGTGTGATAACATGTATGTGTATTGCATGTTGTCGATCCATCTGTTGTAACAGAATAGG CGAATATGAAGTTATTAACAAATTTTGAAATTAGAGGGGCATATTTATGTAATGTTGGGAGTAG TGAAAAGTAGTATTATTTTGGTTATTTTTTGTTCAGTCATCTACGTTGTCCCTTTCATCTGTTG GCTATGGAAGTACCAAGAAGAAATGTGCAATTTAATATGAAAAAAAGGCCTTTAATGTTGAAAG AGGATATAGGATTTTGTGTTTGCATGGGAATTGGCCACATACTTGTTCACATTCGCATTGAAGG TTTGCTGGCTGCGATGACAAGCCATACTGCCATAAAAAAAATAAAATCAAAGATGATTATTTGG AAAGTTATGGATTCATTGTCTTCTCTAACTTTGATATATAATTGTCATGACTAGTCTGTCTGTC TGTGCACGTGACCAGTACATTGGAACACTGTCACATCAATGCATTAATGCCCATTTCTGCGATT CGGTTGCAAACTCTATTGATATCCATCTTGTGGATGTTAAGTATTTTGTCCTGTTTCATGGATA TAAACTTTTATCAATAGAAATATATTCTAAATGTTTACCTTCCCTGCTGAATTGTTAAAAGTCG ATGTTATTCTGATCTTCTGTATCCAGACAATTTCAGGTAGACCACCTCCAGCGGCATCTATGGC AGTAGGACAGTTCTTTAATCCAGAGGAAGGGACGAGTGCACTTTCTGCTGCCCGAATTATTGGC TCCAGCTATATTCCTGAAGTAATTAATTCTTGCTTACCAAAATATGGATAATGATGTTTGTAAC TGTATGATATGGATGTGTTGAAACTTAATTTTTTTTTATCTTAGGAAATATTTTTGAAGGAGGA CCACCCACTGGCTTTAAACTTGTCGTTTTCTGTGAGCCTTGGTCTTCTACCAGTTATATTATCT TTGAGAACTGCTGGATGTGGAGTAAAAGCTACTGGCGACCAATTGGAAGCTGAGAAAAATA

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.313806223

Conservation Information
Conserved circRNAs	NA
PMCS	0.313806223

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							5010005-5009329(+)
5009223-5013864(-)
5009246-5013683(-)
						
						Potential amino acid sequence
						
							MVGSSSMKNVWLSMEHQSILWCNQLVVQVAHTLLSMVDPLNGQPFLSSQKRLFVFAKMLQSAVP
QSLSWVAPVSGVKPPNLIASGNKEASDLQQKDSLSCPPSLQWTSDGLEKDLHIQLNSVTVLAMD
GKRRWLDIKKLGSNGKGHFVFVSNLSPCSGVRIHLWPEKDHSSEQNGVPASKKIVEVTSKMVQI
PAGPAPKQVEPGSQTEQPPPTAFLLLSPEEMSGFRFMTISVAPRPTISGRPPPAASMAVGQFFN
PEEGTSALSAARIIGSSYIPEEIFLKEDHPLALNLSFSVSLGLLPVILSLRTAGCGVKATGDQL
EAEKNSTLPLLCSHLWVSFFCMSMKNGEMDTRQGYHAPAVQNSQMLLLSL*(+)
MAAEQWEGTIFLSFQLVASSFYSTSSSSQR*(-)
MQKKLTQRWLQSNGRVLFFSASNWSPVAFTPHPAVLKDNITGRRPRLTENDKFKASGWSSFKNI
SSGI*(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	5010005-5009329(+) 5009223-5013864(-) 5009246-5013683(-)
Potential amino acid sequence	MVGSSSMKNVWLSMEHQSILWCNQLVVQVAHTLLSMVDPLNGQPFLSSQKRLFVFAKMLQSAVP QSLSWVAPVSGVKPPNLIASGNKEASDLQQKDSLSCPPSLQWTSDGLEKDLHIQLNSVTVLAMD GKRRWLDIKKLGSNGKGHFVFVSNLSPCSGVRIHLWPEKDHSSEQNGVPASKKIVEVTSKMVQI PAGPAPKQVEPGSQTEQPPPTAFLLLSPEEMSGFRFMTISVAPRPTISGRPPPAASMAVGQFFN PEEGTSALSAARIIGSSYIPEEIFLKEDHPLALNLSFSVSLGLLPVILSLRTAGCGVKATGDQL EAEKNSTLPLLCSHLWVSFFCMSMKNGEMDTRQGYHAPAVQNSQMLLLSL(+) MAAEQWEGTIFLSFQLVASSFYSTSSSSQR(-) MQKKLTQRWLQSNGRVLFFSASNWSPVAFTPHPAVLKDNITGRRPRLTENDKFKASGWSSFKNI SSGI*(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os09g0266400_circ_g.2

Address

Any questions?

Supported by