Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d018795_circ_g.2 |
ID in PlantcircBase | zma_circ_009207 |
Alias | Zm07circ00002, zma_circ_0002345, ZmciR313 |
Organism | Zea mays |
Position | chr7: 5366589-5369748 JBrowse» |
Reference genome | AGPv4.38 |
Type | u-circRNA |
Identification method | CIRI2, find_circ |
Parent gene | Zm00001d018795 |
Parent gene annotation |
187-kDa microtubule-associated protein AIR9 |
Parent gene strand | + |
Alternative splicing | Zm00001d018795_circ_g.1 |
Support reads | NA |
Tissues | leaf, endosperm, root |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Zm00001d018795_T028:8 Zm00001d018795_T080:8 Zm00001d018795_T031:8 Zm00001d018795_T064:8 Zm00001d018795_T088:5 Zm00001d018795_T002:8 Zm00001d018795_T022:8 Zm00001d018795_T069:8 Zm00001d018795_T014:8 Zm00001d018795_T082:8 Zm00001d018795_T016:8 Zm00001d018795_T093:1 Zm00001d018795_T045:8 Zm00001d018795_T057:8 Zm00001d018795_T074:8 Zm00001d018795_T071:8 Zm00001d018795_T076:8 Zm00001d018795_T079:8 Zm00001d018795_T085:7 Zm00001d018795_T033:7 Zm00001d018795_T039:8 Zm00001d018795_T029:8 Zm00001d018795_T091:2 Zm00001d018795_T072:8 Zm00001d018795_T019:7 Zm00001d018795_T023:8 Zm00001d018795_T062:7 Zm00001d018795_T025:8 Zm00001d018795_T066:8 Zm00001d018795_T083:8 Zm00001d018795_T050:8 Zm00001d018795_T040:8 Zm00001d018795_T073:8 Zm00001d018795_T005:8 Zm00001d018795_T011:8 Zm00001d018795_T075:8 Zm00001d018795_T060:8 Zm00001d018795_T059:8 Zm00001d018795_T053:8 Zm00001d018795_T009:8 Zm00001d018795_T056:8 Zm00001d018795_T047:8 Zm00001d018795_T048:8 Zm00001d018795_T043:8 Zm00001d018795_T036:8 Zm00001d018795_T034:8 Zm00001d018795_T018:8 Zm00001d018795_T007:7 Zm00001d018795_T051:8 Zm00001d018795_T004:8 Zm00001d018795_T077:8 Zm00001d018795_T086:5 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.155689518 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
5366687-5366707(+) 5366700-5369711(-) 5366791-5369739(-) |
Potential amino acid sequence |
METPSEALKPAEAKPAKPRPVAPTGRFALGTASSIKKRADGSAPAEVGVPRSSLMKSTSSLNAS SATRRSSTGTAGKQQDNGSSAAAKKSSPTLSDGARKTKLVSAPAAGSKPAVEKKTSLVERTGAD LARKPAVKASPTSTLKKVQSKTESSNGSSGSTRRVSSNASVPSPRSVTSNAARKLGTQASSAAS NRRKSSTADSRDSRFMMLPQVDLKASDEVRLDSRGHRVRSLKQLRLSHALEFVYLRDNLLSSLE GIEILKGVKVLDLSFNDFKLPGFEPLGNCVVLQQLYLAGNQITSLASLPELPNLEFLSIAQNRL KSVCMARQPRLQVLAASRNKISTLKGFPHFPSLEHLRVEENPLLEMPHLEAASILLIGPTLKKF NDRGHQRPCFYDRETPGLTRTDLSEYLEVHIVAGGEWKLHQRP*(+) MEFPFPSSNNMNLKIFAQIRPGQARSLSVIEAWALVTSVIELLQSRTYK*(-) MDEAVPKANLPVGATGRGFAGLASAGFKASDGVSIPLQQQYEPQDIRSNPSWSSPESLGHRSMG VGDLGH*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | responsive to drought stress |
Other Information | |
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References | Han et al., 2020; Ma et al., 2021b;Zhang et al., 2019 |