Detail information of Zm00001d018795_circ_g.2


General Information
CircRNA Name Zm00001d018795_circ_g.2
ID in PlantcircBase zma_circ_009207
Alias Zm07circ00002, zma_circ_0002345, ZmciR313
Organism Zea mays
Position chr7: 5366589-5369748  JBrowse»
Reference genome AGPv4.38
Type   u-circRNA
Identification method CIRI2, find_circ
Parent gene Zm00001d018795
Parent gene annotation 187-kDa microtubule-associated protein AIR9
Parent gene strand +
Alternative splicing Zm00001d018795_circ_g.1
Support reads NA
Tissues leaf, endosperm, root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Zm00001d018795_T028:8
Zm00001d018795_T080:8
Zm00001d018795_T031:8
Zm00001d018795_T064:8
Zm00001d018795_T088:5
Zm00001d018795_T002:8
Zm00001d018795_T022:8
Zm00001d018795_T069:8
Zm00001d018795_T014:8
Zm00001d018795_T082:8
Zm00001d018795_T016:8
Zm00001d018795_T093:1
Zm00001d018795_T045:8
Zm00001d018795_T057:8
Zm00001d018795_T074:8
Zm00001d018795_T071:8
Zm00001d018795_T076:8
Zm00001d018795_T079:8
Zm00001d018795_T085:7
Zm00001d018795_T033:7
Zm00001d018795_T039:8
Zm00001d018795_T029:8
Zm00001d018795_T091:2
Zm00001d018795_T072:8
Zm00001d018795_T019:7
Zm00001d018795_T023:8
Zm00001d018795_T062:7
Zm00001d018795_T025:8
Zm00001d018795_T066:8
Zm00001d018795_T083:8
Zm00001d018795_T050:8
Zm00001d018795_T040:8
Zm00001d018795_T073:8
Zm00001d018795_T005:8
Zm00001d018795_T011:8
Zm00001d018795_T075:8
Zm00001d018795_T060:8
Zm00001d018795_T059:8
Zm00001d018795_T053:8
Zm00001d018795_T009:8
Zm00001d018795_T056:8
Zm00001d018795_T047:8
Zm00001d018795_T048:8
Zm00001d018795_T043:8
Zm00001d018795_T036:8
Zm00001d018795_T034:8
Zm00001d018795_T018:8
Zm00001d018795_T007:7
Zm00001d018795_T051:8
Zm00001d018795_T004:8
Zm00001d018795_T077:8
Zm00001d018795_T086:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CATTTGCGTGTTGAGGAGAATCCACTACTTGAGATGCCACACTTGGAAGCTGCTTCTATCCTAC
TTATAGGTCCTACTTTGAAGAAGTTCAATGACCGAGgtcaccaacgcccatgcttctatgaccg
agagactccgggcttgaccaggacggatttgagcgaatatcttgaggttcatattgttgctgga
ggggaatg
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 1259
Transcript exons: 5366589-5367348,5367444-5367509,5367733-5367798,5367938-
5368009,5368088-5368153,5368245-5368307,5368405-5368470,
5369649-5369748
GTCACCAACGCCCATGCTTCTATGACCGAGAGACTCCGGGCTTGACCAGGACGGATTTGAGCGA
ATATCTTGAGGTTCATATTGTTGCTGGAGGGGAATGGAAACTCCATCAGAGGCCTTGAAGCCGG
CGGAGGCTAAACCGGCGAAGCCACGGCCAGTGGCGCCCACGGGCAGGTTCGCCTTGGGGACTGC
TTCGTCCATTAAAAAGCGAGCTGATGGTTCGGCTCCGGCGGAGGTGGGTGTGCCCCGGTCTTCC
TTGATGAAGTCTACCTCGTCGCTGAACGCCAGTTCGGCGACGAGAAGAAGCAGCACGGGGACTG
CTGGGAAGCAACAGGACAATGGGAGCTCAGCTGCTGCTAAGAAGTCTAGTCCTACGCTGTCGGA
TGGCGCGAGGAAGACTAAACTGGTGTCAGCTCCCGCTGCTGGCTCAAAACCAGCAGTGGAGAAG
AAAACATCCTTGGTCGAGAGGACAGGTGCCGATTTGGCCAGGAAGCCTGCTGTTAAGGCATCCC
CAACTTCAACACTGAAGAAGGTCCAGTCAAAGACAGAGAGCTCCAATGGCAGCAGTGGCAGCAC
CAGGAGAGTGTCCTCCAATGCTTCTGTGCCATCGCCACGTTCCGTCACAAGCAATGCAGCAAGG
AAACTGGGTACTCAAGCATCATCTGCTGCGTCTAATCGGCGGAAGAGCTCAACCGCAGATAGCC
GTGATTCGAGATTCATGATGCTGCCACAGGTGGATTTGAAGGCTAGCGATGAAGTGAGGCTGGA
TTCAAGAGGTCATCGAGTTCGTAGTCTCAAGCAGCTGAGGTTATCACATGCTCTTGAGTTTGTG
TATCTGAGGGACAACCTTTTATCAAGTTTGGAGGGCATTGAGATTCTCAAGGGGGTAAAGGTTC
TTGATTTGAGTTTTAATGATTTTAAGCTCCCTGGGTTTGAGCCTCTTGGGAACTGTGTTGTCCT
CCAGCAACTGTATCTTGCTGGAAATCAAATAACTTCACTTGCTAGCCTTCCTGAACTTCCTAAC
TTGGAGTTCCTTTCTATTGCTCAAAACAGGCTAAAGTCAGTTTGTATGGCTCGACAGCCTCGAC
TTCAAGTGTTAGCAGCTAGCAGAAACAAAATATCAACTTTGAAGGGATTTCCACATTTTCCTTC
TCTAGAGCATTTGCGTGTTGAGGAGAATCCACTACTTGAGATGCCACACTTGGAAGCTGCTTCT
ATCCTACTTATAGGTCCTACTTTGAAGAAGTTCAATGACCGAG

Genomic sequence GTCACCAACGCCCATGCTTCTATGACCGAGAGACTCCGGGCTTGACCAGGACGGATTTGAGCGA
ATATCTTGAGGTTCATATTGTTGCTGGAGGGGAATGGAAACTCCATCAGAGGCCTTGAAGCCGG
CGGAGGCTAAACCGGCGAAGCCACGGCCAGTGGCGCCCACGGGCAGGTTCGCCTTGGGGACTGC
TTCGTCCATTAAAAAGCGAGCTGATGGTTCGGCTCCGGCGGAGGTGGGTGTGCCCCGGTCTTCC
TTGATGAAGTCTACCTCGTCGCTGAACGCCAGTTCGGCGACGAGAAGAAGCAGCACGGGGACTG
CTGGGAAGCAACAGGACAATGGGAGCTCAGCTGCTGCTAAGAAGTCTAGTCCTACGCTGTCGGA
TGGCGCGAGGAAGACTAAACTGGTGTCAGCTCCCGCTGCTGGCTCAAAACCAGCAGTGGAGAAG
AAAACATCCTTGGTCGAGAGGACAGGTGCCGATTTGGCCAGGAAGCCTGCTGTTAAGGCATCCC
CAACTTCAACACTGAAGAAGGTCCAGTCAAAGACAGAGAGCTCCAATGGCAGCAGTGGCAGCAC
CAGGAGAGTGTCCTCCAATGCTTCTGTGCCATCGCCACGTTCCGTCACAAGCAATGCAGCAAGG
AAACTGGGTACTCAAGCATCATCTGCTGCGTCTAATCGGCGGAAGAGCTCAACCGCAGATAGCC
GTGATTCGAGATTCATGATGCTGCCACAGGTGGATTTGAAGGCTAGCGATGAAGTGGTTAGTGC
GATTCGTTTTCATTTCTTTTAACATTCCAGGTAACAACATGATTTGGTGGGTTTTATCTGCTCA
ACACCTTTTTTTCTGTACTGCAGAGGCTGGATTCAAGAGGTCATCGAGTTCGTAGTCTCAAGCA
GCTGAGGTTATCACATGCTCTTGAGGTAATCTTTATCCACCCTCCTTTCCTCTCTTATGTTTCC
TAGTTCTTTCTGCTTTGTGGTCTTTGGTTATAACTGAACAACACATGGCTGCTGATTTTACCTT
GCAAAGTCGCAAAGCCTAGGAAGTCCTATGCATGAAGCCATGAAGTAGAGAACCAGAACCTGCA
TAAGTTGCCAATGTGCAATAACCTGGAATGTCTACTGACTAGCATTTTATTTCTAGTTTGTGTA
TCTGAGGGACAACCTTTTATCAAGTTTGGAGGGCATTGAGATTCTCAAGGGGGTAAAGGTATGC
CTTGTGTTGTCTTATCTTATTTATTTATTGTGGGCCTATCTTTCTGTTTTTTCCCACACCATGT
CTGGTCAAATTGCTTGTTTATTCTAGTATTCTACACTACTATAGCTTATGTTTGTGGTAATGTT
TGCAGGTTCTTGATTTGAGTTTTAATGATTTTAAGCTCCCTGGGTTTGAGCCTCTTGGGAACTG
TGTTGTCCTCCAGGTTTGCGCTATCCCCATCATATTAATCGAGATTATAGAAGGCTCACATGCA
CTTATTTTTGTGCACCATACCATGTAGCAACTGTATCTTGCTGGAAATCAAATAACTTCACTTG
CTAGCCTTCCTGAACTTCCTAACTTGGAGGTATTCTGCTATCACTGACTTGATCTTAGCAGTTA
ATTTACTTATTTTGACATAGATTAACATCTTCCACTTGCCATTCTTGTTGCACCAGTTCCTTTC
TATTGCTCAAAACAGGCTAAAGTCAGTTTGTATGGCTCGACAGCCTCGACTTCAAGTGAGTACA
CTGTTCTATTTTTTTTATCTTTCTCTCCACCTTTAACATATTCAAATCTTCAATGCTGGCCTTA
CATCTTTTGAGTCTTTTTGTATAGGTGTTAGCAGCTAGCAGAAACAAAATATCAACTTTGAAGG
GATTTCCACATTTTCCTTCTCTAGAGGTTTGTTTTCTCCTTTGAGTCTTTGTAGTCTTGAACTC
TTTGAAAGAAACATGGTACCGAGATATTAAATTGCTTGCCTCAATCTCTAGGATCAATGGGGTT
GTATATTTGTACAGGCAGGAGCTGCCTATTACAAGAGAAACCGTATTCGGTTACAGCATCCCAA
CTGAGTCTAAGTGTCCGTCTCTAATTAAACTGGACGCATGCCGTCCTGTTTAGTTTTATCTTTA
CCTCTAACCAGATTCGGTTTCTAATCTAGCCTAAGAGGATCTTGGACAACTAAGGTTGTTGTTG
CCTATGGATAGCATATTCTAACATCACCCCTCAAACATAACTTGCACATGTTAAGAATGAAAAC
CAACTTTTCAATAGTCAGTGCCTTAGTAAAGCCATCTATAACTTGGTCTTTTATAGATATAATT
CTGACCTCCAAAATTTCTTAGCTACTATGTCTCACTAAATGGAAATAAATCTCATCATGTTTCA
TATGGCCATGGAACTTTGGATTTGCTGTAAGATAGGTGGCTCCAATGTCATCACATCAGATCCT
TGCAACAGGAGGATAAGGAACCTTTAGTTCTGTGAAAGTGACTATACTCACATCAACTTTACCA
TGGCATTAGCTATGGCTTTATATTCAACTTCAATGCTTCATCTGGAGACTGTGGGCTCTTTCGA
GCACTCCAAGATACTAGATTTCTGCCAAGATATACTGCAAAGCCTCCTATTTAGAGTCTATCAT
CTAAGTTACCTGCCCAATCTTCATTAGAGAAGGCACTCACAATCCCTGTACCTCCAGCCTACGG
GAATTAATTAATTCCTGTCGGTTGACAGCCTGGCCGCAGTGAATTACCTAACTCCCGTCGGCTT
GTCCAAAAGCCGACCAGAGTTAATTTGGTCGATGAGGATTTCCCTGATTCCTGTTGTGATTGGG
TTGCCCACTAATTATAATGAAAACTAATTCTGTTACTTTTGAACTAGTACGATGTTATGGACGA
CTTGTATGCATTAAAGGGACAATTCCAACTGTTTATGAATACATGCTACCAGTCTGTTATGGGG
TTCAAATAATTAAAATGTCAAGTTCTTGTAGAAGAATCATGCGATTTTATCAATAATACTGATA
TAACTTGATAGCCTGGAAAAGTATCTCACCCTGGATATTGAACTGACCACAGCATTTGCGTGTT
GAGGAGAATCCACTACTTGAGATGCCACACTTGGAAGCTGCTTCTATCCTACTTATAGGTCCTA
CTTTGAAGAAGTTCAATGACCGAG
Conservation Information
Conserved circRNAs NA
PMCS 0.155689518
Functional Information
Coding potential Y
Potential coding position 5366687-5366707(+)
5366700-5369711(-)
5366791-5369739(-)
Potential amino acid sequence METPSEALKPAEAKPAKPRPVAPTGRFALGTASSIKKRADGSAPAEVGVPRSSLMKSTSSLNAS
SATRRSSTGTAGKQQDNGSSAAAKKSSPTLSDGARKTKLVSAPAAGSKPAVEKKTSLVERTGAD
LARKPAVKASPTSTLKKVQSKTESSNGSSGSTRRVSSNASVPSPRSVTSNAARKLGTQASSAAS
NRRKSSTADSRDSRFMMLPQVDLKASDEVRLDSRGHRVRSLKQLRLSHALEFVYLRDNLLSSLE
GIEILKGVKVLDLSFNDFKLPGFEPLGNCVVLQQLYLAGNQITSLASLPELPNLEFLSIAQNRL
KSVCMARQPRLQVLAASRNKISTLKGFPHFPSLEHLRVEENPLLEMPHLEAASILLIGPTLKKF
NDRGHQRPCFYDRETPGLTRTDLSEYLEVHIVAGGEWKLHQRP*(+)
MEFPFPSSNNMNLKIFAQIRPGQARSLSVIEAWALVTSVIELLQSRTYK*(-)
MDEAVPKANLPVGATGRGFAGLASAGFKASDGVSIPLQQQYEPQDIRSNPSWSSPESLGHRSMG
VGDLGH*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description responsive to drought stress