Detailed infomation of each circRNA
| General Information | |
|---|---|
| CircRNA Name | Zm00001d021516_circ_g.1 |
| ID in PlantcircBase | zma_circ_009417 |
| Alias | zma_circ_0002601 |
| Organism | Zea mays |
| Position | chr7: 154822632-154825236 JBrowse» |
| Reference genome | AGPv4.38 |
| Type | e-circRNA |
| Identification method | find_circ |
| Parent gene | Zm00001d021516 |
| Parent gene annotation |
Calmodulin-binding transcription activator 5 |
| Parent gene strand | - |
| Alternative splicing | NA |
| Support reads | NA |
| Tissues | leaf, root |
| Exon boundary | Yes-Yes |
| Splicing signals | CT-AC |
| Number of exons covered | Zm00001d021516_T013:3 Zm00001d021516_T002:4 Zm00001d021516_T007:3 Zm00001d021516_T004:3 Zm00001d021516_T010:3 Zm00001d021516_T003:4 Zm00001d021516_T011:3 Zm00001d021516_T001:4 Zm00001d021516_T014:3 |
| Conservation Information | |
|---|---|
| Conserved circRNAs | NA |
| PMCS | 0.144420637 |
| Functional Information | |
|---|---|
| Coding potential | Y |
| Potential coding position |
154825070-154822634(-) |
| Potential amino acid sequence |
MKTPVSDNMPNDVPARQNSLGLWKYLDDDISLDDNPSSGILPTEQVTGEIPFQITEISSEWAYC TEDTKNYPNNCLLPGLVDVEVLVVGCFHENYRHLAGTNLFCVIGDQCVDANIVQTGVYRFIARP HAPGRVNLYLTLDGKTPISEVLSFHYRMVPDSQNLAEDEPQKSKLQMQMRLARLLFTTNKKKIA PKLLVEGSKVSNLLSASTEKEWMDLSKFVTDSKGTYVPATEGLLELVLRNRLQEWLVEKLIEGH KSTGRDDLGQGPIHLCSCLGYTWAIHLFSLSGFSLDFRDSSGWTALHWAAYCGREKMVAALLSA GANPSLVTDPTHDVPGGQTAGDLAAGQGYHGLAAYLSEKGLTAHFEAMSLSKGKRSTSRTESLK RNTKEFENLSEQELCLRESLAAYRNAADAASNIQAALRERTLKLQTKAIQLANPENDASAIVAA MRIQHAYRNYNRKKMMRAAARIQSHFRTWQIRRNFMNMRRQAIKIQAIFSPPTNVVSEAYANPG LSQVSESYFGSLKDQANHAPSLLTSDLDSQSKQHTNSLMKTPVSDNMPNDVPARQNSLGLWKYL DDDISLDDNPSSGILPTEQVTGEIPFQITEISSEWAYCTEDTKNYPNNCLLPGLVDVEVLVVGC FHENYRHLAGTNLFCVIGDQCVDANIVQTGVYRFIARPHAPGRVNLYLTLDGKTPISEVLSFHY RMVPDSQNLAEDEPQKSKLQMQMRLARLLFTTNKKKIAPKLLVEGSKVSNLLSASTEKEWMDLS KFVTDSKGTYVPATEGLLELVLRNRLQEWLVEKLIEGHKSTGRDDLGQGPIHLCSCLGYTWAIH LFSLSGFSLDFRDSSGWTALHWAAYCGREKMVAALLSAGANPSLVTDPTHDVPGGQTAGDLAAG QGYHGLAAYLSEKGLTAHFEAMSLSKGKRSTSRTESLKRNTKEFENLSEQELCLRESLAAYRNA ADAASNIQAALRERTLKLQTKAIQLANPENDASAIVAAMRIQHAYRNYNRKKMMRAAARIQSHF RTWQIRRNFMNMRRQAIKIQAIFSPPTNVVSEAYANPGLSQVSESYFGSLKDQANHAPSLLTSD LDSQSKQHTNSLMKTPVSDNMPNDVPARQNSLGLWKYLDDDISLDDNPSSGILPTEQVTGEIPF QITEISSEWAYCTEDTKNYPNNCLLPGLVDVEVLVVGCFHENYRHLAGTNLFCVIGDQCVDANI VQTGVYRFIARPHAPGRVNLYLTLDGKTPISEVLSFHYRMVPDSQNLAEDEPQKSKLQMQMRLA RLLFTTNKKKIAPKLLVEGSKVSNLLSASTEKEWMDLSKFVTDSKGTYVPATEGLLELVLRNRL QEWLVEKLIEGHKSTGRDDLGQGPIHLCSCLGYTWAIHLFSLSGFSLDFRDSSGWTALHWAAYC GREKMVAALLSAGANPSLVTDPTHDVPGGQTAGDLAAGQGYHGLAAYLSEKGLTAHFEAMSLSK GKRSTSRTESLKRNTKEFENLSEQELCLRESLAAYRNAADAASNIQAALRERTLKLQTKAIQLA NPENDASAIVAAMRIQHAYRNYNRKKMMRAAARIQSHFRTWQIRRNFMNMRRQAIKIQAIFSPP TNVVSEAYANPGLSQVSESYFGSLKDQANHAPSLLTSDLDSQSKQHTNSLMKTPVSDNMPNDVP ARQNSLGLWKYLDDDISLDDNPSSGILPTEQVTGEIPFQITEISSEWAYCTEDTKNYPNNCLLP GLVDVEVLVVGCFHENYRHLAGTNLFCVIGDQCVDANIVQTGVYRFIARPHAPGRVNLYLTLDG KTPISEVLSFHYRMVPDSQNLAEDEPQKSKLQMQMRLARLLFTTNKKKIAPKLLVEGSKVSNLL SASTEKEWMDLSKFVTDSKGTYVPATEGLLELVLRNRLQEWLVEKLIEGHKSTGRDDLGQGPIH LCSCLGYTWAIHLFSLSGFSLDFRDSSGWTALHWAAYCGREKMVAALLSAGANPSLVTDPTHDV PGGQTAGDLAAGQGYHGLAAYLSEKGLTAHFEAMSLSKGKRSTSRTESLKRNTKEFENLSEQEL CLRESLAAYRNAADAASNIQAALRERTLKLQTKAIQLANPENDASAIVAAMRIQHAYRNYNRKK MMRAAARIQSHFRTWQIRRNFMNMRRQAIKIQ(-) |
| Sponge-miRNAs | NA |
| circRNA-miRNA-mRNA network | VISUALIZATION |
| Potential function description | NA |
| Other Information | |
|---|---|
| References | Ma et al., 2021b |