Detailed infomation of each circRNA
General Information | |
---|---|
CircRNA Name | Zm00001d021516_circ_g.1 |
ID in PlantcircBase | zma_circ_009417 |
Alias | zma_circ_0002601 |
Organism | Zea mays |
Position | chr7: 154822632-154825236 JBrowse» |
Reference genome | AGPv4.38 |
Type | e-circRNA |
Identification method | find_circ |
Parent gene | Zm00001d021516 |
Parent gene annotation |
Calmodulin-binding transcription activator 5 |
Parent gene strand | - |
Alternative splicing | NA |
Support reads | NA |
Tissues | leaf, root |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Zm00001d021516_T013:3 Zm00001d021516_T002:4 Zm00001d021516_T007:3 Zm00001d021516_T004:3 Zm00001d021516_T010:3 Zm00001d021516_T003:4 Zm00001d021516_T011:3 Zm00001d021516_T001:4 Zm00001d021516_T014:3 |
Conservation Information | |
---|---|
Conserved circRNAs | NA |
PMCS | 0.144420637 |
Functional Information | |
---|---|
Coding potential | Y |
Potential coding position |
154825070-154822634(-) |
Potential amino acid sequence |
MKTPVSDNMPNDVPARQNSLGLWKYLDDDISLDDNPSSGILPTEQVTGEIPFQITEISSEWAYC TEDTKNYPNNCLLPGLVDVEVLVVGCFHENYRHLAGTNLFCVIGDQCVDANIVQTGVYRFIARP HAPGRVNLYLTLDGKTPISEVLSFHYRMVPDSQNLAEDEPQKSKLQMQMRLARLLFTTNKKKIA PKLLVEGSKVSNLLSASTEKEWMDLSKFVTDSKGTYVPATEGLLELVLRNRLQEWLVEKLIEGH KSTGRDDLGQGPIHLCSCLGYTWAIHLFSLSGFSLDFRDSSGWTALHWAAYCGREKMVAALLSA GANPSLVTDPTHDVPGGQTAGDLAAGQGYHGLAAYLSEKGLTAHFEAMSLSKGKRSTSRTESLK RNTKEFENLSEQELCLRESLAAYRNAADAASNIQAALRERTLKLQTKAIQLANPENDASAIVAA MRIQHAYRNYNRKKMMRAAARIQSHFRTWQIRRNFMNMRRQAIKIQAIFSPPTNVVSEAYANPG LSQVSESYFGSLKDQANHAPSLLTSDLDSQSKQHTNSLMKTPVSDNMPNDVPARQNSLGLWKYL DDDISLDDNPSSGILPTEQVTGEIPFQITEISSEWAYCTEDTKNYPNNCLLPGLVDVEVLVVGC FHENYRHLAGTNLFCVIGDQCVDANIVQTGVYRFIARPHAPGRVNLYLTLDGKTPISEVLSFHY RMVPDSQNLAEDEPQKSKLQMQMRLARLLFTTNKKKIAPKLLVEGSKVSNLLSASTEKEWMDLS KFVTDSKGTYVPATEGLLELVLRNRLQEWLVEKLIEGHKSTGRDDLGQGPIHLCSCLGYTWAIH LFSLSGFSLDFRDSSGWTALHWAAYCGREKMVAALLSAGANPSLVTDPTHDVPGGQTAGDLAAG QGYHGLAAYLSEKGLTAHFEAMSLSKGKRSTSRTESLKRNTKEFENLSEQELCLRESLAAYRNA ADAASNIQAALRERTLKLQTKAIQLANPENDASAIVAAMRIQHAYRNYNRKKMMRAAARIQSHF RTWQIRRNFMNMRRQAIKIQAIFSPPTNVVSEAYANPGLSQVSESYFGSLKDQANHAPSLLTSD LDSQSKQHTNSLMKTPVSDNMPNDVPARQNSLGLWKYLDDDISLDDNPSSGILPTEQVTGEIPF QITEISSEWAYCTEDTKNYPNNCLLPGLVDVEVLVVGCFHENYRHLAGTNLFCVIGDQCVDANI VQTGVYRFIARPHAPGRVNLYLTLDGKTPISEVLSFHYRMVPDSQNLAEDEPQKSKLQMQMRLA RLLFTTNKKKIAPKLLVEGSKVSNLLSASTEKEWMDLSKFVTDSKGTYVPATEGLLELVLRNRL QEWLVEKLIEGHKSTGRDDLGQGPIHLCSCLGYTWAIHLFSLSGFSLDFRDSSGWTALHWAAYC GREKMVAALLSAGANPSLVTDPTHDVPGGQTAGDLAAGQGYHGLAAYLSEKGLTAHFEAMSLSK GKRSTSRTESLKRNTKEFENLSEQELCLRESLAAYRNAADAASNIQAALRERTLKLQTKAIQLA NPENDASAIVAAMRIQHAYRNYNRKKMMRAAARIQSHFRTWQIRRNFMNMRRQAIKIQAIFSPP TNVVSEAYANPGLSQVSESYFGSLKDQANHAPSLLTSDLDSQSKQHTNSLMKTPVSDNMPNDVP ARQNSLGLWKYLDDDISLDDNPSSGILPTEQVTGEIPFQITEISSEWAYCTEDTKNYPNNCLLP GLVDVEVLVVGCFHENYRHLAGTNLFCVIGDQCVDANIVQTGVYRFIARPHAPGRVNLYLTLDG KTPISEVLSFHYRMVPDSQNLAEDEPQKSKLQMQMRLARLLFTTNKKKIAPKLLVEGSKVSNLL SASTEKEWMDLSKFVTDSKGTYVPATEGLLELVLRNRLQEWLVEKLIEGHKSTGRDDLGQGPIH LCSCLGYTWAIHLFSLSGFSLDFRDSSGWTALHWAAYCGREKMVAALLSAGANPSLVTDPTHDV PGGQTAGDLAAGQGYHGLAAYLSEKGLTAHFEAMSLSKGKRSTSRTESLKRNTKEFENLSEQEL CLRESLAAYRNAADAASNIQAALRERTLKLQTKAIQLANPENDASAIVAAMRIQHAYRNYNRKK MMRAAARIQSHFRTWQIRRNFMNMRRQAIKIQ(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
---|---|
References | Ma et al., 2021b |