Detail information of Zm00001d021516_circ_g.1


General Information
CircRNA Name Zm00001d021516_circ_g.1
ID in PlantcircBase zma_circ_009417
Alias zma_circ_0002601
Organism Zea mays
Position chr7: 154822632-154825236  JBrowse»
Reference genome AGPv4.38
Type   e-circRNA
Identification method find_circ
Parent gene Zm00001d021516
Parent gene annotation Calmodulin-binding transcription activator 5
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues leaf, root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Zm00001d021516_T013:3
Zm00001d021516_T002:4
Zm00001d021516_T007:3
Zm00001d021516_T004:3
Zm00001d021516_T010:3
Zm00001d021516_T003:4
Zm00001d021516_T011:3
Zm00001d021516_T001:4
Zm00001d021516_T014:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTTGATCTTTCAGAGATCCAAAGTAACTCTCTGATACTTGACTAAGGCCAGGATTAGCATAAGC
TTCTGAAACCACATTAGTTGGTGGAGAAAAGATAGCttgtattttgatagcttgtcttcgcatg
ttcatgaagttcctcctaatctgccatgttcggaaatgactctgtattcttgcagcagctctca
tcattttc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TTGTATTTTGATAGCTTGTCTTCGCATGTTCATGAAGTTCCTCCTAATCTGCCATGTTCGGAAA
TGACTCTGTATTCTTGCAGCAGCTCTCATCATTTTCTTTCTGTTGTAGTTCCGGTATGCGTGCT
GAATCCTCATAGCAGCAACTATTGCAGATGCATCATTCTCGGGATTGGCCAACTGAATTGCTTT
TGTTTGAAGCTTAAGAGTTCGCTCCCTGAGTGCGGCTTGTATGTTGCTAGCAGCATCAGCAGCA
TTGCGGTAGGCTGCTAAAGATTCTCGTAAGCACAATTCTTGTTCACTAAGGTTTTCAAATTCCT
TGGTATTCCGTTTTAGTGACTCTGTCCTTGATGTTGATCGCTTACCCTTGGACAGTGACATAGC
CTCAAAATGAGCAGTCAGCCCTTTCTCAGAAAGATATGCAGCTAAGCCATGATAACCTTGTCCA
GCAGCCAGATCACCAGCAGTTTGTCCACCAGGGACATCATGAGTAGGATCTGTAACCAAGCTTG
GATTTGCTCCAGCAGACAAAAGAGCAGCAACCATTTTTTCCCTAGCAAAAGAAAACTAAAACTT
AAGATAAGACCAGATGGCTCTGAAAATCTAAATGATAATTTGGTCCCAACAAACATGTGCCTGA
GATCACATAGTTTATACTACTATAGTCACCTATATCAAGATTAACCAGATCCCAAAGAACATGT
GTTTCAAATTCCCTTAAATCATACGTTAATAACTTAGCAGGTTTTGAAAACAAAGTTTGGCGCA
TCTCTGGTAGTGGTTTCTTATTAGTTCTAAATTTTGATATCAATAATATATATACACATTCAAA
GTTCAAGCACCGTACACGAAATTATTTTTTCTCGAACACGCAGGAGAGCTGGGTGTCATTGTAT
TAAGAAGAAGGGGAAAAGACCCCGAAAACACCCAAATACAACACAACAACAAACACCCATACCC
ACACACACGCACATGCACAACGAACCCGCCCAGCCTGCTCCACAACTAGAGCAGGAGCAGGAAC
AGAGCGCCTGCCCGCTGGCGACACCCCCAACACTAAAATAAAATAAAAACTAAACCACAGGCTT
CGAGCTTGGAGGAAGGAGATCCCCTTAGCCAAAGTCCAGAAAAGAACTTCCTCCACAAAATTAT
TCTTTTTCACATTTCATCTTTTATTTAGTCAGTGTGATAAACACATCCCAGTTGCCAGAACTAA
TACAAGACATCATTCTTTTTCTCATTGTACTGTCCATGAACGTTAGGAATTTCAGAAGAAAGAG
GATACCTTCCACAGTATGCGGCCCAATGCAAAGCTGTCCAACCAGAAGAATCACGGAAATCCAA
GGAGAATCCTGACAAAGAAAATAAGTGAATGGCCCAAGTATAGCCCAAGCAAGAACACAGATGG
ATAGGCCCTTGTCCTAGATCATCGCGGCCAGTCGACTTGTGGCCTTCAATTAATTTTTCAACAA
GCCACTCTTGCAATCTATTACGCAGTACTAGTTCAAGCAATCCCTCAGTGGCCGGAACATAAGT
GCCTTTAGAATCAGTAACAAATTTTGACAGATCCATCCATTCCTTCTCTGTCGATGCTGATAAG
AGATTGGAAACCTTGCTTCCTTCTACAAGTAACTTGGGTGCTATCTTTTTCTTGTTTGTGGTGA
ACAACAATCGAGCTAGTCTCATCTGCATCTGAAGCTTTGACTTTTGGGGCTCATCCTCAGCCAA
GTTTTGACTGTCAGGCACCATACGATAGTGAAAACTCAAAACCTCACTGATTGGTGTTTTCCCA
TCCAAAGTCAAATAAAGATTGACTCGTCCAGGAGCATGTGGTCTAGCAATGAAACGGTAAACGC
CAGTTTGAACAATATTTGCATCAACACACTGGTCACCAATGACACAGAAGAGATTGGTCCCAGC
CAGATGTCTGTAGTTCTCATGGAAACATCCAACCACAAGGACCTACAAATTAAGTTGACATTAA
TACATTGTTGTTTATTGGAATATAGGTAGAAACTTATAAGCTCACACATGCATGCATATGCATA
TAAATTGTTCTAGAATGCAGACCTCCACATCCACCAAACCAGGAAGTAAGCAATTATTTGGGTA
GTTCTTAACAGATGAAAAAGTGAAGTACAACATTTCCCAGGAGAATTGAACAGCTGAAGAGAAA
ATAAAAAAACATGGAAACTTAGTATAGGATGGGAAAGGGGGAGGGGGCTTTAACCTTTGTGTCC
TCAGTACAATAAGCCCATTCTGAGGATATCTCAGTGATCTGAAAGGGTATTTCGCCAGTCACCT
GTTCAGTGGGGAGTATGCCCGAGCTTGGATTATCATCTAAACTAATATCATCATCCAAGTATTT
CCATAACCCAAGACTGTTCTGCCTAGCAGGTACATCATTTGGCATGTTATCAGACACCGGAGTT
TTCATCAAAGAATTTGTATGTTGCTTTGATTGTGAATCCAGATCTGATGTTAAAAGAGATGGAG
CATGGTTTGCTTGATCTTTCAGAGATCCAAAGTAACTCTCTGATACTTGACTAAGGCCAGGATT
AGCATAAGCTTCTGAAACCACATTAGTTGGTGGAGAAAAGATAGC
Conservation Information
Conserved circRNAs NA
PMCS 0.144420637
Functional Information
Coding potential Y
Potential coding position 154825070-154822634(-)
Potential amino acid sequence MKTPVSDNMPNDVPARQNSLGLWKYLDDDISLDDNPSSGILPTEQVTGEIPFQITEISSEWAYC
TEDTKNYPNNCLLPGLVDVEVLVVGCFHENYRHLAGTNLFCVIGDQCVDANIVQTGVYRFIARP
HAPGRVNLYLTLDGKTPISEVLSFHYRMVPDSQNLAEDEPQKSKLQMQMRLARLLFTTNKKKIA
PKLLVEGSKVSNLLSASTEKEWMDLSKFVTDSKGTYVPATEGLLELVLRNRLQEWLVEKLIEGH
KSTGRDDLGQGPIHLCSCLGYTWAIHLFSLSGFSLDFRDSSGWTALHWAAYCGREKMVAALLSA
GANPSLVTDPTHDVPGGQTAGDLAAGQGYHGLAAYLSEKGLTAHFEAMSLSKGKRSTSRTESLK
RNTKEFENLSEQELCLRESLAAYRNAADAASNIQAALRERTLKLQTKAIQLANPENDASAIVAA
MRIQHAYRNYNRKKMMRAAARIQSHFRTWQIRRNFMNMRRQAIKIQAIFSPPTNVVSEAYANPG
LSQVSESYFGSLKDQANHAPSLLTSDLDSQSKQHTNSLMKTPVSDNMPNDVPARQNSLGLWKYL
DDDISLDDNPSSGILPTEQVTGEIPFQITEISSEWAYCTEDTKNYPNNCLLPGLVDVEVLVVGC
FHENYRHLAGTNLFCVIGDQCVDANIVQTGVYRFIARPHAPGRVNLYLTLDGKTPISEVLSFHY
RMVPDSQNLAEDEPQKSKLQMQMRLARLLFTTNKKKIAPKLLVEGSKVSNLLSASTEKEWMDLS
KFVTDSKGTYVPATEGLLELVLRNRLQEWLVEKLIEGHKSTGRDDLGQGPIHLCSCLGYTWAIH
LFSLSGFSLDFRDSSGWTALHWAAYCGREKMVAALLSAGANPSLVTDPTHDVPGGQTAGDLAAG
QGYHGLAAYLSEKGLTAHFEAMSLSKGKRSTSRTESLKRNTKEFENLSEQELCLRESLAAYRNA
ADAASNIQAALRERTLKLQTKAIQLANPENDASAIVAAMRIQHAYRNYNRKKMMRAAARIQSHF
RTWQIRRNFMNMRRQAIKIQAIFSPPTNVVSEAYANPGLSQVSESYFGSLKDQANHAPSLLTSD
LDSQSKQHTNSLMKTPVSDNMPNDVPARQNSLGLWKYLDDDISLDDNPSSGILPTEQVTGEIPF
QITEISSEWAYCTEDTKNYPNNCLLPGLVDVEVLVVGCFHENYRHLAGTNLFCVIGDQCVDANI
VQTGVYRFIARPHAPGRVNLYLTLDGKTPISEVLSFHYRMVPDSQNLAEDEPQKSKLQMQMRLA
RLLFTTNKKKIAPKLLVEGSKVSNLLSASTEKEWMDLSKFVTDSKGTYVPATEGLLELVLRNRL
QEWLVEKLIEGHKSTGRDDLGQGPIHLCSCLGYTWAIHLFSLSGFSLDFRDSSGWTALHWAAYC
GREKMVAALLSAGANPSLVTDPTHDVPGGQTAGDLAAGQGYHGLAAYLSEKGLTAHFEAMSLSK
GKRSTSRTESLKRNTKEFENLSEQELCLRESLAAYRNAADAASNIQAALRERTLKLQTKAIQLA
NPENDASAIVAAMRIQHAYRNYNRKKMMRAAARIQSHFRTWQIRRNFMNMRRQAIKIQAIFSPP
TNVVSEAYANPGLSQVSESYFGSLKDQANHAPSLLTSDLDSQSKQHTNSLMKTPVSDNMPNDVP
ARQNSLGLWKYLDDDISLDDNPSSGILPTEQVTGEIPFQITEISSEWAYCTEDTKNYPNNCLLP
GLVDVEVLVVGCFHENYRHLAGTNLFCVIGDQCVDANIVQTGVYRFIARPHAPGRVNLYLTLDG
KTPISEVLSFHYRMVPDSQNLAEDEPQKSKLQMQMRLARLLFTTNKKKIAPKLLVEGSKVSNLL
SASTEKEWMDLSKFVTDSKGTYVPATEGLLELVLRNRLQEWLVEKLIEGHKSTGRDDLGQGPIH
LCSCLGYTWAIHLFSLSGFSLDFRDSSGWTALHWAAYCGREKMVAALLSAGANPSLVTDPTHDV
PGGQTAGDLAAGQGYHGLAAYLSEKGLTAHFEAMSLSKGKRSTSRTESLKRNTKEFENLSEQEL
CLRESLAAYRNAADAASNIQAALRERTLKLQTKAIQLANPENDASAIVAAMRIQHAYRNYNRKK
MMRAAARIQSHFRTWQIRRNFMNMRRQAIKIQ(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ma et al., 2021b