Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d038963_circ_g.1 |
ID in PlantcircBase | zma_circ_009172 |
Alias | Zm06circ00104, ZmciR271 |
Organism | Zea mays |
Position | chr6: 167831056-167831520 JBrowse» |
Reference genome | AGPv4.38 |
Type | e-circRNA |
Identification method | CIRI2 |
Parent gene | Zm00001d038963 |
Parent gene annotation |
DUF1639 family protein |
Parent gene strand | + |
Alternative splicing | NA |
Support reads | NA |
Tissues | leaf, endosperm |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Zm00001d038963_T001:2 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.241622958 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
167831136-167831132(+) 167831144-167831059(-) |
Potential amino acid sequence |
MGMGVPVPDPRRQQQQQHAGAAAAATSKPASKVEMPRIYTTLSRKEKEEDFMAMKGTKLPQRPK RRPKIVEKTVSAICPGMWLTDVTRGRYEVREKKCPKKISGGPCGGEVLGGEGREAACGVPGLRD GHGRPGPGPEAAAAAAACRRGGSGDVEAGVEGGDAADLHHAVSEGEGGGLHGHEGHQAAAAPQA AAQDRREDRQCDLPRDVADGCDQGPVRGAREEVPQEDQRRTVRRGSSRRRGPRSSVRCPRAP*( +) MPITEPGDTARCFSALAAENFPAARSSADLLGALLLAHLVPAPGHIRQPHPGADRTDGLLDDLG PPLGALRQLGALHGHEVLLLLLPRQRGVDPRHLHLRRRLRRRRCRRAGMLLLLLPPRVRDRDAH AHHGARGHRTLLLGPRRRELPRRTVLR*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | responsive to drought stress |
Other Information | |
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References | Han et al., 2020;Zhang et al., 2019 |