Detail information of BGIOSGA024312_circ_g.3


General Information
CircRNA Name BGIOSGA024312_circ_g.3
ID in PlantcircBase osi_circ_017065
Alias Chr07:17815058_17815447(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr7: 15811618-15812007  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRCexplorer2
Parent gene BGIOSGA024312
Parent gene annotation NA
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   CT-TA
Number of exons covered BGIOSGA024312-TA:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACACTCGACTTGCAAAGGCAGGAATATAGTGTCCAGCATACGATTCCCCAGTAATATAGAAATC
ATTTTTAGCAAAATTCGGGTGCTCAGTGAAGAAGGCccacagagcttgatagcaagttcacaag
ttggaacaattttgttaatcctgttaaactgtgattttgtaattaaccccatatccaatgagta
atcagtgt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCACAGAGCTTGATAGCAAGTTCACAAGTTGGAACAATTTTGTTAATCCTGTTAAACTGTGATT
TTGTAATTAACCCCATATCCAATGAGTAATCAGTGTATGCCTTGTATTGTATTGCTGGATCCGT
TAACCCATTGCCAATAGCAAAACCCTGGAAAATCACGAAAGAGAGGTTTTCACCATGACTGTAA
TCACATATAGGGCAGAACCATTAAGATACTTCCAGAAAGAGAGAAAAACAAAACCTTCAAATTG
ATGTGAATGCCCTCGCTGTTCTTGTTCCCCTTGTACACTCGACTTGCAAAGGCAGGAATATAGT
GTCCAGCATACGATTCCCCAGTAATATAGAAATCATTTTTAGCAAAATTCGGGTGCTCAGTGAA
GAAGGC
Conservation Information
Conserved circRNAs gma_circ_006573
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021