Plant Circular RNA Database

Detail information of GLYMA_18G226900_circ_g.1

			
						 General Information
					
						CircRNA Name
						GLYMA_18G226900_circ_g.1
					
						ID in PlantcircBase
						gma_circ_004777
					
						Alias
						Gm18circRNA2478
					
						Organism
						
							Glycine max						
					
						Position
						
							chr18: 51617025-51618698  JBrowse»						
					
						Reference genome
						
							v2.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						Tophat, CIRI
					
						Parent gene
						
							GLYMA_18G226900						
					
						Parent gene annotation
						
							hypothetical protein
							
						Parent gene strand
						+
					
						Alternative splicing
						
							GLYMA_18G226300_circ_ag.1 GLYMA_18G226300_circ_ag.2 GLYMA_18G226300_circ_ag.3 GLYMA_18G226300_circ_ag.4 GLYMA_18G226300_circ_ag.5 GLYMA_18G226300_circ_ag.6 GLYMA_18G226500_circ_g.1 GLYMA_18G226500_circ_ag.1 GLYMA_18G226500_circ_ag.2 GLYMA_18G226500_circ_g.3 GLYMA_18G226500_circ_ag.4 GLYMA_18G226500_circ_ag.5 GLYMA_18G226500_circ_ag.6 GLYMA_18G226800_circ_ag.1 GLYMA_18G226800_circ_igg.1 GLYMA_18G226900_circ_igg.1 						
					
						Support reads
						NA
					
						Tissues
						stem
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						KRH00655:1
KRH00654:2
KRH00655:1

General Information
CircRNA Name	GLYMA_18G226900_circ_g.1
ID in PlantcircBase	gma_circ_004777
Alias	Gm18circRNA2478
Organism	Glycine max
Position	chr18: 51617025-51618698 JBrowse»
Reference genome	v2.0.38
Type	e-circRNA
Identification method	Tophat, CIRI
Parent gene	GLYMA_18G226900
Parent gene annotation	hypothetical protein
Parent gene strand	+
Alternative splicing	GLYMA_18G226300_circ_ag.1 GLYMA_18G226300_circ_ag.2 GLYMA_18G226300_circ_ag.3 GLYMA_18G226300_circ_ag.4 GLYMA_18G226300_circ_ag.5 GLYMA_18G226300_circ_ag.6 GLYMA_18G226500_circ_g.1 GLYMA_18G226500_circ_ag.1 GLYMA_18G226500_circ_ag.2 GLYMA_18G226500_circ_g.3 GLYMA_18G226500_circ_ag.4 GLYMA_18G226500_circ_ag.5 GLYMA_18G226500_circ_ag.6 GLYMA_18G226800_circ_ag.1 GLYMA_18G226800_circ_igg.1 GLYMA_18G226900_circ_igg.1
Support reads	NA
Tissues	stem
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	KRH00655:1 KRH00654:2 KRH00655:1

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							TGCGCCAATGTTTGAGGGGATTAAAACTTCAAGGGAGGATTCTGATTTAACATTCCACCATGAT
CTCAACTCCACAATCAAGAAGTTGTTTCACCAACATgtattttttgaatattcaaagcatatga
tccttgtcgattaccttgagacaacgggtgttaggcacggcaaacctgcttttctgaagaattt
ctttggcg

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 1560
Transcript exons: 51617025-51617750,51617865-51618698
GTATTTTTTGAATATTCAAAGCATATGATCCTTGTCGATTACCTTGAGACAACGGGTGTTAGGC
ACGGCAAACCTGCTTTTCTGAAGAATTTCTTTGGCGGTTTAAAGAAATTAGAATTTGATGGGGA
GATTAAGAGAGAGATCGTAATTCCATCTCATGTACTTCCTTACTTGAAGACCTTAGAAGAATTG
AATGTACATAGCTCCGATGCTGTGCAGGTAATATTTGACATAGATGACAGTGATGCCAACACCA
AGGGAATGGTCCTTCCATTGAAAAAGCTTACTCTAAAAGGCTTGTCAAATTTGAAATGTGTATG
GAACAAAACCCTCCGAAGGATTCTCAGCTTTCCCAATTTGCAAGTAGTGTTTGTTACGAAATGT
AGAAGCTTGGCAACATTGTTCCCTTTGTCCCTTGCCAAAAATCTTGTAAATCTTGAGACACTTA
CAGTATGGAGGTGTGACAAGTTGGTAGAAATTGTTGGAAAGGAAGATGCAATGGAACTTGGAAG
AACTGAAATATTTGAATTCCCTTGTTTGTCGAAGTTGTATCTTTATAAGCTGTCACTGCTTAGT
TGCTTTTATCCTGGAAAACACCATCTGGAATGCCCCGTATTAGAATGCCTGGATGTGTCCTATT
GTCCTAAGTTGAAGCTATTCACATCAGAATTTCATAATAGTCACAGAGAAGCAGTTATAGAGCA
ACCTCTTTTCATGGTTGAAAAGGTTGATCCCAAACTGAAGGAATTGACACTCAATGAAGAAAAC
ATTATCTTGTTGAGGGATGCACATTTGCCGCAAGACTTCCTTTGCAAATTAAATATTCTTGATC
TGTCCTTTGATGATTATGAGAATAAGAAAGATACTTTGCCTTTTGATTTCCTTCACAAGGTACC
CCGTGTAGAATGTCTTCGAGTGCAAAGATGCTATGGTCTCAAGGAGATATTTCCCTCTCAAAAG
CTCCAAGTTCATCACGGAATACTTGCACGATTGAATGAATTATACTTATTTAAACTAAAAGAGT
TGGAGTCGATAGGGTTGGAGCACCCATGGGTAAAGCCATACTCTGCAAAGCTTGAAACATTAGA
AATTCGCAAATGCTCTCGGTTAGAGAAAGTAGTGTCTTGTGCAGTATCTTTCAGCAGTCTCAAA
GAGTTGCAAGTGAGTGAGTGTGAAAGGATGGAGTATTTATTCACATCTTCAACTGCCAAAAGTT
TGGTGCAACTTAAGATGCTATATATAGAAAAATGTGAATCAATAAAAGAAATAGTAAGAAAAGA
AGATGAAAGCGATGCTTCTGAAGAGATGATATTTGGACGGCTCACAAAATTAAGGTTGGAGTCC
TTAGGAAGGCTAGTAAGGTTTTATTCAGGGGATGGCACCTTGCAATTCTCATGTTTGGAAGAAG
CCACCATAGCTGAATGCCCCAATATGAATACTTTCTCTGAAGGATTCGTAAATGCGCCAATGTT
TGAGGGGATTAAAACTTCAAGGGAGGATTCTGATTTAACATTCCACCATGATCTCAACTCCACA
ATCAAGAAGTTGTTTCACCAACAT
						
					

						Genomic sequence
						
							GTATTTTTTGAATATTCAAAGCATATGATCCTTGTCGATTACCTTGAGACAACGGGTGTTAGGC
ACGGCAAACCTGCTTTTCTGAAGAATTTCTTTGGCGGTTTAAAGAAATTAGAATTTGATGGGGA
GATTAAGAGAGAGATCGTAATTCCATCTCATGTACTTCCTTACTTGAAGACCTTAGAAGAATTG
AATGTACATAGCTCCGATGCTGTGCAGGTAATATTTGACATAGATGACAGTGATGCCAACACCA
AGGGAATGGTCCTTCCATTGAAAAAGCTTACTCTAAAAGGCTTGTCAAATTTGAAATGTGTATG
GAACAAAACCCTCCGAAGGATTCTCAGCTTTCCCAATTTGCAAGTAGTGTTTGTTACGAAATGT
AGAAGCTTGGCAACATTGTTCCCTTTGTCCCTTGCCAAAAATCTTGTAAATCTTGAGACACTTA
CAGTATGGAGGTGTGACAAGTTGGTAGAAATTGTTGGAAAGGAAGATGCAATGGAACTTGGAAG
AACTGAAATATTTGAATTCCCTTGTTTGTCGAAGTTGTATCTTTATAAGCTGTCACTGCTTAGT
TGCTTTTATCCTGGAAAACACCATCTGGAATGCCCCGTATTAGAATGCCTGGATGTGTCCTATT
GTCCTAAGTTGAAGCTATTCACATCAGAATTTCATAATAGTCACAGAGAAGCAGTTATAGAGCA
ACCTCTTTTCATGGTTGAAAAGGTGACAAATTAAAGCATTTTCACTTTAACCTTTTTTGTTTTC
TTTTCATTATATATATTTTCCTTCTTCTGAGTTCTAACTGCCACCATGCATTTTCTTTTGAATA
ATTGAAAGGTTGATCCCAAACTGAAGGAATTGACACTCAATGAAGAAAACATTATCTTGTTGAG
GGATGCACATTTGCCGCAAGACTTCCTTTGCAAATTAAATATTCTTGATCTGTCCTTTGATGAT
TATGAGAATAAGAAAGATACTTTGCCTTTTGATTTCCTTCACAAGGTACCCCGTGTAGAATGTC
TTCGAGTGCAAAGATGCTATGGTCTCAAGGAGATATTTCCCTCTCAAAAGCTCCAAGTTCATCA
CGGAATACTTGCACGATTGAATGAATTATACTTATTTAAACTAAAAGAGTTGGAGTCGATAGGG
TTGGAGCACCCATGGGTAAAGCCATACTCTGCAAAGCTTGAAACATTAGAAATTCGCAAATGCT
CTCGGTTAGAGAAAGTAGTGTCTTGTGCAGTATCTTTCAGCAGTCTCAAAGAGTTGCAAGTGAG
TGAGTGTGAAAGGATGGAGTATTTATTCACATCTTCAACTGCCAAAAGTTTGGTGCAACTTAAG
ATGCTATATATAGAAAAATGTGAATCAATAAAAGAAATAGTAAGAAAAGAAGATGAAAGCGATG
CTTCTGAAGAGATGATATTTGGACGGCTCACAAAATTAAGGTTGGAGTCCTTAGGAAGGCTAGT
AAGGTTTTATTCAGGGGATGGCACCTTGCAATTCTCATGTTTGGAAGAAGCCACCATAGCTGAA
TGCCCCAATATGAATACTTTCTCTGAAGGATTCGTAAATGCGCCAATGTTTGAGGGGATTAAAA
CTTCAAGGGAGGATTCTGATTTAACATTCCACCATGATCTCAACTCCACAATCAAGAAGTTGTT
TCACCAACAT
						
					

			
		

Sequences
Splice junction sequence	TGCGCCAATGTTTGAGGGGATTAAAACTTCAAGGGAGGATTCTGATTTAACATTCCACCATGAT CTCAACTCCACAATCAAGAAGTTGTTTCACCAACATgtattttttgaatattcaaagcatatga tccttgtcgattaccttgagacaacgggtgttaggcacggcaaacctgcttttctgaagaattt ctttggcg
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 1560 Transcript exons: 51617025-51617750,51617865-51618698 GTATTTTTTGAATATTCAAAGCATATGATCCTTGTCGATTACCTTGAGACAACGGGTGTTAGGC ACGGCAAACCTGCTTTTCTGAAGAATTTCTTTGGCGGTTTAAAGAAATTAGAATTTGATGGGGA GATTAAGAGAGAGATCGTAATTCCATCTCATGTACTTCCTTACTTGAAGACCTTAGAAGAATTG AATGTACATAGCTCCGATGCTGTGCAGGTAATATTTGACATAGATGACAGTGATGCCAACACCA AGGGAATGGTCCTTCCATTGAAAAAGCTTACTCTAAAAGGCTTGTCAAATTTGAAATGTGTATG GAACAAAACCCTCCGAAGGATTCTCAGCTTTCCCAATTTGCAAGTAGTGTTTGTTACGAAATGT AGAAGCTTGGCAACATTGTTCCCTTTGTCCCTTGCCAAAAATCTTGTAAATCTTGAGACACTTA CAGTATGGAGGTGTGACAAGTTGGTAGAAATTGTTGGAAAGGAAGATGCAATGGAACTTGGAAG AACTGAAATATTTGAATTCCCTTGTTTGTCGAAGTTGTATCTTTATAAGCTGTCACTGCTTAGT TGCTTTTATCCTGGAAAACACCATCTGGAATGCCCCGTATTAGAATGCCTGGATGTGTCCTATT GTCCTAAGTTGAAGCTATTCACATCAGAATTTCATAATAGTCACAGAGAAGCAGTTATAGAGCA ACCTCTTTTCATGGTTGAAAAGGTTGATCCCAAACTGAAGGAATTGACACTCAATGAAGAAAAC ATTATCTTGTTGAGGGATGCACATTTGCCGCAAGACTTCCTTTGCAAATTAAATATTCTTGATC TGTCCTTTGATGATTATGAGAATAAGAAAGATACTTTGCCTTTTGATTTCCTTCACAAGGTACC CCGTGTAGAATGTCTTCGAGTGCAAAGATGCTATGGTCTCAAGGAGATATTTCCCTCTCAAAAG CTCCAAGTTCATCACGGAATACTTGCACGATTGAATGAATTATACTTATTTAAACTAAAAGAGT TGGAGTCGATAGGGTTGGAGCACCCATGGGTAAAGCCATACTCTGCAAAGCTTGAAACATTAGA AATTCGCAAATGCTCTCGGTTAGAGAAAGTAGTGTCTTGTGCAGTATCTTTCAGCAGTCTCAAA GAGTTGCAAGTGAGTGAGTGTGAAAGGATGGAGTATTTATTCACATCTTCAACTGCCAAAAGTT TGGTGCAACTTAAGATGCTATATATAGAAAAATGTGAATCAATAAAAGAAATAGTAAGAAAAGA AGATGAAAGCGATGCTTCTGAAGAGATGATATTTGGACGGCTCACAAAATTAAGGTTGGAGTCC TTAGGAAGGCTAGTAAGGTTTTATTCAGGGGATGGCACCTTGCAATTCTCATGTTTGGAAGAAG CCACCATAGCTGAATGCCCCAATATGAATACTTTCTCTGAAGGATTCGTAAATGCGCCAATGTT TGAGGGGATTAAAACTTCAAGGGAGGATTCTGATTTAACATTCCACCATGATCTCAACTCCACA ATCAAGAAGTTGTTTCACCAACAT
Genomic sequence	GTATTTTTTGAATATTCAAAGCATATGATCCTTGTCGATTACCTTGAGACAACGGGTGTTAGGC ACGGCAAACCTGCTTTTCTGAAGAATTTCTTTGGCGGTTTAAAGAAATTAGAATTTGATGGGGA GATTAAGAGAGAGATCGTAATTCCATCTCATGTACTTCCTTACTTGAAGACCTTAGAAGAATTG AATGTACATAGCTCCGATGCTGTGCAGGTAATATTTGACATAGATGACAGTGATGCCAACACCA AGGGAATGGTCCTTCCATTGAAAAAGCTTACTCTAAAAGGCTTGTCAAATTTGAAATGTGTATG GAACAAAACCCTCCGAAGGATTCTCAGCTTTCCCAATTTGCAAGTAGTGTTTGTTACGAAATGT AGAAGCTTGGCAACATTGTTCCCTTTGTCCCTTGCCAAAAATCTTGTAAATCTTGAGACACTTA CAGTATGGAGGTGTGACAAGTTGGTAGAAATTGTTGGAAAGGAAGATGCAATGGAACTTGGAAG AACTGAAATATTTGAATTCCCTTGTTTGTCGAAGTTGTATCTTTATAAGCTGTCACTGCTTAGT TGCTTTTATCCTGGAAAACACCATCTGGAATGCCCCGTATTAGAATGCCTGGATGTGTCCTATT GTCCTAAGTTGAAGCTATTCACATCAGAATTTCATAATAGTCACAGAGAAGCAGTTATAGAGCA ACCTCTTTTCATGGTTGAAAAGGTGACAAATTAAAGCATTTTCACTTTAACCTTTTTTGTTTTC TTTTCATTATATATATTTTCCTTCTTCTGAGTTCTAACTGCCACCATGCATTTTCTTTTGAATA ATTGAAAGGTTGATCCCAAACTGAAGGAATTGACACTCAATGAAGAAAACATTATCTTGTTGAG GGATGCACATTTGCCGCAAGACTTCCTTTGCAAATTAAATATTCTTGATCTGTCCTTTGATGAT TATGAGAATAAGAAAGATACTTTGCCTTTTGATTTCCTTCACAAGGTACCCCGTGTAGAATGTC TTCGAGTGCAAAGATGCTATGGTCTCAAGGAGATATTTCCCTCTCAAAAGCTCCAAGTTCATCA CGGAATACTTGCACGATTGAATGAATTATACTTATTTAAACTAAAAGAGTTGGAGTCGATAGGG TTGGAGCACCCATGGGTAAAGCCATACTCTGCAAAGCTTGAAACATTAGAAATTCGCAAATGCT CTCGGTTAGAGAAAGTAGTGTCTTGTGCAGTATCTTTCAGCAGTCTCAAAGAGTTGCAAGTGAG TGAGTGTGAAAGGATGGAGTATTTATTCACATCTTCAACTGCCAAAAGTTTGGTGCAACTTAAG ATGCTATATATAGAAAAATGTGAATCAATAAAAGAAATAGTAAGAAAAGAAGATGAAAGCGATG CTTCTGAAGAGATGATATTTGGACGGCTCACAAAATTAAGGTTGGAGTCCTTAGGAAGGCTAGT AAGGTTTTATTCAGGGGATGGCACCTTGCAATTCTCATGTTTGGAAGAAGCCACCATAGCTGAA TGCCCCAATATGAATACTTTCTCTGAAGGATTCGTAAATGCGCCAATGTTTGAGGGGATTAAAA CTTCAAGGGAGGATTCTGATTTAACATTCCACCATGATCTCAACTCCACAATCAAGAAGTTGTT TCACCAACAT

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.202260673

Conservation Information
Conserved circRNAs	NA
PMCS	0.202260673

			
				
						 Functional Information
					

				
						Coding potential
						Y
					

						Potential coding position
						
							51617050-51618695(+)
51618659-51617049(+)
						
					

						Potential amino acid sequence
						
							MILVDYLETTGVRHGKPAFLKNFFGGLKKLEFDGEIKREIVIPSHVLPYLKTLEELNVHSSDAV
QVIFDIDDSDANTKGMVLPLKKLTLKGLSNLKCVWNKTLRRILSFPNLQVVFVTKCRSLATLFP
LSLAKNLVNLETLTVWRCDKLVEIVGKEDAMELGRTEIFEFPCLSKLYLYKLSLLSCFYPGKHH
LECPVLECLDVSYCPKLKLFTSEFHNSHREAVIEQPLFMVEKVDPKLKELTLNEENIILLRDAH
LPQDFLCKLNILDLSFDDYENKKDTLPFDFLHKVPRVECLRVQRCYGLKEIFPSQKLQVHHGIL
ARLNELYLFKLKELESIGLEHPWVKPYSAKLETLEIRKCSRLEKVVSCAVSFSSLKELQVSECE
RMEYLFTSSTAKSLVQLKMLYIEKCESIKEIVRKEDESDASEEMIFGRLTKLRLESLGRLVRFY
SGDGTLQFSCLEEATIAECPNMNTFSEGFVNAPMFEGIKTSREDSDLTFHHDLNSTIKKLFHQH
VFFEYSKHMILVDYLETTGVRHGKPAFLKNFFGGLKKLEFDGEIKREIVIPSHVLPYLKTLEEL
NVHSSDAVQVIFDIDDSDANTKGMVLPLKKLTLKGLSNLKCVWNKTLRRILSFPNLQVVFVTKC
RSLATLFPLSLAKNLVNLETLTVWRCDKLVEIVGKEDAMELGRTEIFEFPCLSKLYLYKLSLLS
CFYPGKHHLECPVLECLDVSYCPKLKLFTSEFHNSHREAVIEQPLFMVEKVDPKLKELTLNEEN
IILLRDAHLPQDFLCKLNILDLSFDDYENKKDTLPFDFLHKVPRVECLRVQRCYGLKEIFPSQK
LQVHHGILARLNELYLFKLKELESIGLEHPWVKPYSAKLETLEIRKCSRLEKVVSCAVSFSSLK
ELQVSECERMEYLFTSSTAKSLVQLKMLYIEKCESIKEIVRKEDESDASEEMIFGRLTKLRLES
LGRLVRFYSGDGTLQFSCLEEATIAECPNMNTFSEGFVNAPMFEGIKTSREDSDLTFHHDLNST
IKKLFHQHVFFEYSKHMILVDYLETTGVRHGKPAFLKNFFGGLKKLEFDGEIKREIVIPSHVLP
YLKTLEELNVHSSDAVQVIFDIDDSDANTKGMVLPLKKLTLKGLSNLKCVWNKTLRRILSFPNL
QVVFVTKCRSLATLFPLSLAKNLVNLETLTVWRCDKLVEIVGKEDAMELGRTEIFEFPCLSKLY
LYKLSLLSCFYPGKHHLECPVLECLDVSYCPKLKLFTSEFHNSHREAVIEQPLFMVEKVDPKLK
ELTLNEENIILLRDAHLPQDFLCKLNILDLSFDDYENKKDTLPFDFLHKVPRVECLRVQRCYGL
KEIFPSQKLQVHHGILARLNELYLFKLKELESIGLEHPWVKPYSAKLETLEIRKCSRLEKVVSC
AVSFSSLKELQVSECERMEYLFTSSTAKSLVQLKMLYIEKCESIKEIVRKEDESDASEEMIFGR
LTKLRLESLGRLVRFYSGDGTLQFSCLEEATIAECPNMNTFSEGFVNAPMFEGIKTSREDSDLT
FHHDLNSTIKKLFHQHVFFEYSKHMILVDYLETTGVRHGKPAFLKNFFGGLKKLEFDGEIKREI
VIPSHVLPYLKTLEELNVHSSDAVQVIFDIDDSDANTKGMVLPLKKLTLKGLSNLKCVWNKTLR
RILSFPNLQVVFVTKCRSLATLFPLSLAKNLVNLETLTVWRCDKLVEIVGKEDAMELGRTEIFE
FPCLSKLYLYKLSLLSCFYPGKHHLECPVLECLDVSYCPKLKLFTSEFHNSHREAVIEQPLFMV
EKVDPKLKELTLNEENIILLRDAHLPQDFLCKLNILDLSFDDYENKKDTLPFDFLHKVPRVECL
RVQRCYGLKEIFPSQKLQVHHGILARLNELYLFKLKELESIGLEHPWVKPYSAKLETLEIRKCS
RLEKVVSCAVSFSSLKELQVSECERMEYLFTSSTAKSLVQLKMLYIEKCESIKEIVRKEDESDA
SEEMIFGRLTKLRLESLGRLVRFYSGDGTLQFSCLEEATIAECPNMNTFSEGFVNAPMFEGIKT
SREDSDLTFHHDLNSTIKKLFHQH(+)
MISTPQSRSCFTNMYFLNIQSI*(+)
						
					

						Sponge-miRNAs
						
							gma-miR1535a 						
					

						circRNA-miRNA-mRNA network
						 VISUALIZATION
					

						Potential function description
						NA
					

			
		

Functional Information
Coding potential	Y
Potential coding position	51617050-51618695(+) 51618659-51617049(+)
Potential amino acid sequence	MILVDYLETTGVRHGKPAFLKNFFGGLKKLEFDGEIKREIVIPSHVLPYLKTLEELNVHSSDAV QVIFDIDDSDANTKGMVLPLKKLTLKGLSNLKCVWNKTLRRILSFPNLQVVFVTKCRSLATLFP LSLAKNLVNLETLTVWRCDKLVEIVGKEDAMELGRTEIFEFPCLSKLYLYKLSLLSCFYPGKHH LECPVLECLDVSYCPKLKLFTSEFHNSHREAVIEQPLFMVEKVDPKLKELTLNEENIILLRDAH LPQDFLCKLNILDLSFDDYENKKDTLPFDFLHKVPRVECLRVQRCYGLKEIFPSQKLQVHHGIL ARLNELYLFKLKELESIGLEHPWVKPYSAKLETLEIRKCSRLEKVVSCAVSFSSLKELQVSECE RMEYLFTSSTAKSLVQLKMLYIEKCESIKEIVRKEDESDASEEMIFGRLTKLRLESLGRLVRFY SGDGTLQFSCLEEATIAECPNMNTFSEGFVNAPMFEGIKTSREDSDLTFHHDLNSTIKKLFHQH VFFEYSKHMILVDYLETTGVRHGKPAFLKNFFGGLKKLEFDGEIKREIVIPSHVLPYLKTLEEL NVHSSDAVQVIFDIDDSDANTKGMVLPLKKLTLKGLSNLKCVWNKTLRRILSFPNLQVVFVTKC RSLATLFPLSLAKNLVNLETLTVWRCDKLVEIVGKEDAMELGRTEIFEFPCLSKLYLYKLSLLS CFYPGKHHLECPVLECLDVSYCPKLKLFTSEFHNSHREAVIEQPLFMVEKVDPKLKELTLNEEN IILLRDAHLPQDFLCKLNILDLSFDDYENKKDTLPFDFLHKVPRVECLRVQRCYGLKEIFPSQK LQVHHGILARLNELYLFKLKELESIGLEHPWVKPYSAKLETLEIRKCSRLEKVVSCAVSFSSLK ELQVSECERMEYLFTSSTAKSLVQLKMLYIEKCESIKEIVRKEDESDASEEMIFGRLTKLRLES LGRLVRFYSGDGTLQFSCLEEATIAECPNMNTFSEGFVNAPMFEGIKTSREDSDLTFHHDLNST IKKLFHQHVFFEYSKHMILVDYLETTGVRHGKPAFLKNFFGGLKKLEFDGEIKREIVIPSHVLP YLKTLEELNVHSSDAVQVIFDIDDSDANTKGMVLPLKKLTLKGLSNLKCVWNKTLRRILSFPNL QVVFVTKCRSLATLFPLSLAKNLVNLETLTVWRCDKLVEIVGKEDAMELGRTEIFEFPCLSKLY LYKLSLLSCFYPGKHHLECPVLECLDVSYCPKLKLFTSEFHNSHREAVIEQPLFMVEKVDPKLK ELTLNEENIILLRDAHLPQDFLCKLNILDLSFDDYENKKDTLPFDFLHKVPRVECLRVQRCYGL KEIFPSQKLQVHHGILARLNELYLFKLKELESIGLEHPWVKPYSAKLETLEIRKCSRLEKVVSC AVSFSSLKELQVSECERMEYLFTSSTAKSLVQLKMLYIEKCESIKEIVRKEDESDASEEMIFGR LTKLRLESLGRLVRFYSGDGTLQFSCLEEATIAECPNMNTFSEGFVNAPMFEGIKTSREDSDLT FHHDLNSTIKKLFHQHVFFEYSKHMILVDYLETTGVRHGKPAFLKNFFGGLKKLEFDGEIKREI VIPSHVLPYLKTLEELNVHSSDAVQVIFDIDDSDANTKGMVLPLKKLTLKGLSNLKCVWNKTLR RILSFPNLQVVFVTKCRSLATLFPLSLAKNLVNLETLTVWRCDKLVEIVGKEDAMELGRTEIFE FPCLSKLYLYKLSLLSCFYPGKHHLECPVLECLDVSYCPKLKLFTSEFHNSHREAVIEQPLFMV EKVDPKLKELTLNEENIILLRDAHLPQDFLCKLNILDLSFDDYENKKDTLPFDFLHKVPRVECL RVQRCYGLKEIFPSQKLQVHHGILARLNELYLFKLKELESIGLEHPWVKPYSAKLETLEIRKCS RLEKVVSCAVSFSSLKELQVSECERMEYLFTSSTAKSLVQLKMLYIEKCESIKEIVRKEDESDA SEEMIFGRLTKLRLESLGRLVRFYSGDGTLQFSCLEEATIAECPNMNTFSEGFVNAPMFEGIKT SREDSDLTFHHDLNSTIKKLFHQH(+) MISTPQSRSCFTNMYFLNIQSI*(+)
Sponge-miRNAs	gma-miR1535a
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Zhao et al., 2017a

circRNA

Detail information of GLYMA_18G226900_circ_g.1

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