Detail information of AT1G75500_circ_g.5


General Information
CircRNA Name AT1G75500_circ_g.5
ID in PlantcircBase ath_circ_010321
Alias 1:28339893-28340131
Organism Arabidpsis thaliana
Position chr1: 28339893-28340131  JBrowse»
Reference genome TAIR10.38
Type   ue-circRNA
Identification method find_circ; CIRI2
Parent gene AT1G75500
Parent gene annotation Protein WALLS ARE THIN 1
Parent gene strand -
Alternative splicing NA
Support reads 1/1
Tissues seedling;flower
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered AT1G75500.2:1
AT1G75500.1:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AAGCTGAAGCTTCTCCGGAACTCCCCATAAGGATCTCCGATTATCGGTGTTATCCGCCATTGGA
TCGAGCTTAACAATCGATCAACGAAGGAAAAAGGCTcgaagggaaggagaagaagcaaggcgat
gatgttacgataaacagggaagacgagtttgctgattcccatgttaagagcagctcgagacacc
acgtggaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CGAAGGGAAGGAGAAGAAGCAAGGCGATGATGTTACGATAAACAGGGAAGACGAGTTTGCTGAT
TCCCATGTTAAGAGCAGCTCGAGACACCACGTGGAATCCGGCGTAACCGAATTGCAACGTCAGC
ATCGCTATGTGAAGCTGAAGCTTCTCCGGAACTCCCCATAAGGATCTCCGATTATCGGTGTTAT
CCGCCATTGGATCGAGCTTAACAATCGATCAACGAAGGAAAAAGGCT
Conservation Information
Conserved circRNAs NA
PMCS 0.330246012
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Philips et al., 2020