Detail information of Os02g0617300_circ_g.7


General Information
CircRNA Name Os02g0617300_circ_g.7
ID in PlantcircBase osa_circ_015528
Alias Os_ciR4389
Organism Oryza sativa
Position chr2: 24496196-24496354  JBrowse»
Reference genome IRGSP-1.0.38
Type   ei-circRNA
Identification method find_circ
Parent gene Os02g0617300
Parent gene annotation Similar to OSIGBa0157A06.7 protein. (Os02t0617300-01);Armadillo-
like helical domain containing protein. (Os02t0617300-02)
Parent gene strand -
Alternative splicing Os02g0617300_circ_g.5 Os02g0617300_circ_g.6 Os02g0617300_circ_g.8 Os02g0617300_circ_g.9 Os02g0617300_circ_g.10
Support reads 5
Tissues root
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered Os02t0617300-02:1
Os02t0617300-01:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACATGTACTTCTAAAATGAAATATTTTTGGATGAACTAATTTGACAGCCCCTCAAGAATTGGTG
TTAAATCAAATACCTcaattttttctcaccaaggtttgttcagtcattgcaaattcaataagaa
ttcttttttttctaacagaattccataacac
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CAATTTTTTCTCACCAAGGTTTGTTCAGTCATTGCAAATTCAATAAGAATTCTTTTTTTTCTAA
CAGAATTCCATAACACACATGTACTTCTAAAATGAAATATTTTTGGATGAACTAATTTGACAGC
CCCTCAAGAATTGGTGTTAAATCAAATACCT
Conservation Information
Conserved circRNAs NA
PMCS 0.182389937
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015