Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os02g0797500_circ_g.3 |
ID in PlantcircBase | osa_circ_016948 |
Alias | Os02circ29023 |
Organism | Oryza sativa |
Position | chr2: 33943143-33944732 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | CIRCexplorer, SMALT, Segemehl |
Parent gene | Os02g0797500 |
Parent gene annotation |
Similar to Plastidic aspartate aminotransferase. (Os02t0797500-0 1);Similar to Plastidic aspartate aminotransferase. (Os02t079750 0-02) |
Parent gene strand | + |
Alternative splicing | Os02g0797500_circ_g.2 Os02g0797500_circ_g.4 Os02g0797500_circ_g.5 |
Support reads | 2/1 |
Tissues | panicle/shoot, root |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Os02t0797500-02:7 Os02t0797500-01:7 |
Conservation Information | |
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Conserved circRNAs | osi_circ_004382* |
PMCS | 0.309958433 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
33943159-33943158(+) 33944700-33943189(+) 33943161-33944608(-) |
Potential amino acid sequence |
MMALAVDVSRFEGVPMAPPDPILGVSEAFKADQNDLKLNLGVGAYRTEELQPYVLNVVKKAETL MLEKGENKEYLPIEGLAAFNKATAELLFGADNPVLKQGRVATLQSLSGTGSLRLAAAFIQRYFP EAKVLISSPTWGNHKNIFNDAKVPWSEYRYYDPKTVGLDFEGMIADIQAAPDGSFVLLHGCAHN PTGIDPTPEQWEKIADVIQEKKHMPFFDVAYQGFASGSLDEDASSVRLFVQRGLEVFVAQSYSK NLGLYAERIGAINVVCSTPEVANRILDVS*(+) MLSAQHLKSQTEFWTCHDGPCSRCLSF*(+) MTRPKFCLRLQVLSRQHLLLQFFLHINQGFCYKTAQQTLPVPVEQKA*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Lu et al., 2015;Chu et al., 2017 |