Detail information of Os02g0797500_circ_g.3


General Information
CircRNA Name Os02g0797500_circ_g.3
ID in PlantcircBase osa_circ_016948
Alias Os02circ29023
Organism Oryza sativa
Position chr2: 33943143-33944732  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer, SMALT, Segemehl
Parent gene Os02g0797500
Parent gene annotation Similar to Plastidic aspartate aminotransferase. (Os02t0797500-0
1);Similar to Plastidic aspartate aminotransferase. (Os02t079750
0-02)
Parent gene strand +
Alternative splicing Os02g0797500_circ_g.2 Os02g0797500_circ_g.4 Os02g0797500_circ_g.5
Support reads 2/1
Tissues panicle/shoot, root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os02t0797500-02:7
Os02t0797500-01:7
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AAGTGTTTGTTGCGCAGTCTTATAGCAAAAACCTTGGTTTATATGCAGAAAGAATTGGAGCAAT
AAATGTTGTCTGCTCAACACCTGAAGTCGCAAACAGaattttggacgtgtcatgatggcccttg
cagtagatgtctctcgttttgaaggagtgccgatggcccctccagacccaattctcggggtttc
agaagcat
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 854
Transcript exons: 33943143-33943337,33943414-33943452,33943568-33943657,33
943787-33943895,33944000-33944109,33944341-33944484,3394
4566-33944732
AATTTTGGACGTGTCATGATGGCCCTTGCAGTAGATGTCTCTCGTTTTGAAGGAGTGCCGATGG
CCCCTCCAGACCCAATTCTCGGGGTTTCAGAAGCATTTAAGGCAGATCAAAATGATCTGAAGCT
CAACCTTGGTGTTGGTGCCTATAGAACAGAAGAGTTACAGCCTTATGTCCTCAATGTGGTCAAG
AAGGCTGAAACTCTTATGTTGGAGAAAGGAGAAAACAAGGAGTATCTGCCAATTGAAGGCTTAG
CTGCATTTAACAAAGCAACTGCAGAACTATTGTTTGGAGCTGATAATCCAGTACTCAAGCAAGG
ACGTGTTGCTACTCTTCAGTCTCTCTCAGGAACCGGGTCGCTGCGCCTTGCTGCAGCATTTATA
CAAAGATATTTCCCTGAAGCAAAAGTACTGATATCATCTCCCACTTGGGGCAATCACAAGAACA
TTTTCAATGATGCAAAGGTACCTTGGTCAGAGTACCGTTATTACGACCCCAAGACTGTTGGCTT
GGATTTTGAGGGAATGATAGCTGACATACAGGCTGCCCCAGATGGATCTTTTGTTCTGCTGCAT
GGTTGCGCTCACAACCCAACTGGAATAGACCCAACTCCGGAACAATGGGAGAAAATTGCAGATG
TCATTCAAGAGAAGAAACACATGCCTTTCTTTGATGTTGCATATCAGGGTTTTGCCAGTGGAAG
CCTTGATGAAGATGCATCTTCTGTCAGGCTTTTTGTTCAACGGGGACTGGAAGTGTTTGTTGCG
CAGTCTTATAGCAAAAACCTTGGTTTATATGCAGAAAGAATTGGAGCAATAAATGTTGTCTGCT
CAACACCTGAAGTCGCAAACAG

Genomic sequence AATTTTGGACGTGTCATGATGGCCCTTGCAGTAGATGTCTCTCGTTTTGAAGGAGTGCCGATGG
CCCCTCCAGACCCAATTCTCGGGGTTTCAGAAGCATTTAAGGCAGATCAAAATGATCTGAAGCT
CAACCTTGGTGTTGGTGCCTATAGAACAGAAGAGTTACAGCCTTATGTCCTCAATGTGGTCAAG
AAGGTAAGTCTAATAATACCTATCATTTCCTTAATATAACTCAGTTCTTGTTGTGACACACTAT
TCTTACACGTGGTAGGCTGAAACTCTTATGTTGGAGAAAGGAGAAAACAAGGAGGTATGGTGTA
TTTTCCTTCAAATTCAAGTAGCTGGATTATAAGGAATTATTTCTGGAGTTTTCTGTATTTCTGT
TTCTGAAGGTTGATGACAAAATTATGTTTTTTTTGGTGCAGTATCTGCCAATTGAAGGCTTAGC
TGCATTTAACAAAGCAACTGCAGAACTATTGTTTGGAGCTGATAATCCAGTACTCAAGCAAGGA
CGTGTATGTGCTGTGGCCTATGCAGCTCTTGCTGTACTTATTTTGTAAATACTAAGATTTTCTG
GAATGCTGCTACAGCGAAGCATGTCCTTATATTTAGTAAACATTATTTAATGATAATTCCTTCT
GTAGGTTGCTACTCTTCAGTCTCTCTCAGGAACCGGGTCGCTGCGCCTTGCTGCAGCATTTATA
CAAAGATATTTCCCTGAAGCAAAAGTACTGATATCATCTCCCACTTGGGGTATGTATGTGAATT
AATGTGCTTAATCTTTGAGCATTCAACTTCATTTTTCATAGCAGAGTGTCTCATTGGCAAACTT
TGAACTCCAATCTATATTCTTACAGGCAATCACAAGAACATTTTCAATGATGCAAAGGTACCTT
GGTCAGAGTACCGTTATTACGACCCCAAGACTGTTGGCTTGGATTTTGAGGGAATGATAGCTGA
CATACAGGTCGTGTTTTCTAACTCATTTATATTCAATACTACTATCTGTGTTTTCTATTTTAAA
CTTGATGAGCATTGTTTAGCATAACTTTGTCGTTCAAATTGGCATGTATCCATCATAGAAATTT
ACACCTGTCACTTGTCTGTTTACTATTGTTAATTGTCAATTTTCTGTTTACTATTGTTAATTTC
TATGTGTTGAGTATTGGTTTGTGATATTGATTTGTGTGTCCAATAGGCTGCCCCAGATGGATCT
TTTGTTCTGCTGCATGGTTGCGCTCACAACCCAACTGGAATAGACCCAACTCCGGAACAATGGG
AGAAAATTGCAGATGTCATTCAAGAGAAGAAACACATGCCTTTCTTTGATGTTGCATATCAGGT
GAAATGTTCTCACTTTATTATTTCGTTTTTCTCTGCATGAAAACAAATATCTTACTGACTAGCA
AATATTTCTCTGCAGGGTTTTGCCAGTGGAAGCCTTGATGAAGATGCATCTTCTGTCAGGCTTT
TTGTTCAACGGGGACTGGAAGTGTTTGTTGCGCAGTCTTATAGCAAAAACCTTGGTTTATATGC
AGAAAGAATTGGAGCAATAAATGTTGTCTGCTCAACACCTGAAGTCGCAAACAG
Conservation Information
Conserved circRNAs osi_circ_004382*
PMCS 0.309958433
Functional Information
Coding potential Y
Potential coding position 33943159-33943158(+)
33944700-33943189(+)
33943161-33944608(-)
Potential amino acid sequence MMALAVDVSRFEGVPMAPPDPILGVSEAFKADQNDLKLNLGVGAYRTEELQPYVLNVVKKAETL
MLEKGENKEYLPIEGLAAFNKATAELLFGADNPVLKQGRVATLQSLSGTGSLRLAAAFIQRYFP
EAKVLISSPTWGNHKNIFNDAKVPWSEYRYYDPKTVGLDFEGMIADIQAAPDGSFVLLHGCAHN
PTGIDPTPEQWEKIADVIQEKKHMPFFDVAYQGFASGSLDEDASSVRLFVQRGLEVFVAQSYSK
NLGLYAERIGAINVVCSTPEVANRILDVS*(+)
MLSAQHLKSQTEFWTCHDGPCSRCLSF*(+)
MTRPKFCLRLQVLSRQHLLLQFFLHINQGFCYKTAQQTLPVPVEQKA*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Lu et al., 2015;Chu et al., 2017