Detail information of AT2G31410_circ_g.1


General Information
CircRNA Name AT2G31410_circ_g.1
ID in PlantcircBase ath_circ_015880
Alias NA
Organism Arabidpsis thaliana
Position chr2: 13392246-13392406  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method circRNA_finder
Parent gene AT2G31410
Parent gene annotation Coiled-coil protein
Parent gene strand -
Alternative splicing AT2G31410_circ_g.2 AT2G31410_circ_g.3 AT2G31410_circ_g.4 AT2G31410_circ_g.5 AT2G31410_circ_g.6 AT2G31410_circ_g.7 AT2G31410_circ_g.8 AT2G31410_circ_g.9 AT2G31410_circ_g.10
Support reads 3
Tissues root
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered AT2G31410.1:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GATTTGTAATCTTCTGCAACTTAGTACCAGTTCTCAAAACATTCTCCTTCTTCCGCTTCTCTCT
CTCTTCCTTCTTCTTCcaccactcaacatctcgtcaggaattttcttaagctgcttcctctgct
tcttagacatagaaattttcttcaaagtcttgg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CACCACTCAACATCTCGTCAGGAATTTTCTTAAGCTGCTTCCTCTGCTTCTTAGACATAGAAAT
TTTCTTCAAAGTCTTGGGATTTGTAATCTTCTGCAACTTAGTACCAGTTCTCAAAACATTCTCC
TTCTTCCGCTTCTCTCTCTCTTCCTTCTTCTTC
Conservation Information
Conserved circRNAs NA
PMCS 0.237892596
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017