Detail information of AT4G29900_circ_g.1


General Information
CircRNA Name AT4G29900_circ_g.1
ID in PlantcircBase ath_circ_033541
Alias Ath_circ_FC2879
Organism Arabidpsis thaliana
Position chr4: 14611704-14614464  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method CIRCexplorer, PcircRNA_finder
Parent gene AT4G29900
Parent gene annotation Calcium-transporting ATPase 10, plasma membrane-type
Parent gene strand -
Alternative splicing AT4G29900_circ_g.2 AT4G29900_circ_g.3 AT4G29900_circ_g.4 AT4G29900_circ_g.5 AT4G29900_circ_g.6 AT4G29900_circ_g.7 AT4G29900_circ_g.8 AT4G29900_circ_g.9 AT4G29900_circ_g.10 AT4G29900_circ_g.11 AT4G29900_circ_g.12 AT4G29900_circ_g.13 AT4G29900_circ_g.14
Support reads 1
Tissues whole_plant
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT4G29900.1:13
AT4G29900.2:13
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATATACGGGAACCAGAAAATGTAGCTAAAGAATAAACCTTTATCGCCCAATTGAGAATTGCTCT
TTCTGTAGGAGATCCAGAAACCTGAATCTCACCACTctggagcacaatggtgatagagatgatg
cccacaaaaaggtgattcctgagaactcctcggaaaatgtttatttcatctggcttccgtgcat
tgaactcg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGGAGCACAATGGTGATAGAGATGATGCCCACAAAAAGGTGATTCCTGAGAACTCCTCGGAAA
ATGTTTATTTCATCTGGCTTCCGTGCATTGAACTCGTTGAATACCTAACAAATTTAACAATCAG
TTTGTTTTCTGTCGTCCCCTAGCCTTTTTATACAGAGAAGTCAGTATCTTTTACCTGGCAGATG
ACAAAGGCATTGAAGATGACTGTATTCTTCACTCTCTCAGCATTTGGCTTACTCTTCAGATGCA
GGATACTTATTCCACGGAAATTGAGGATTAACAAGACTGTCACTTGGTACATCGCCTAATAATT
TGCAAAACAGTTGGAGCAGCAGAAAAGGCTTAACCATTGTGTTCTTAGAGATGCTAGGGAGGTA
AGAAAAAGAAGAAGAGGATAACTTACTTGTATAAACAAGTTTCTCCACATGATATTTGTGATGA
GAGGTTCTCTGAGAGCAAAAGATAAATCCAATTATTGTGCAAATTGAAGAGAAACTGAGAGCAC
TCTATAGTTGAACAAGACTTAACACGCATGCTCAAGTCTGATAAGAAGTGGTACCTTCTGCCAA
CAGGCGCTCGATCCATTAAGTGATCGGTTGGTGGCTCAGTGGCTAAAGCAAGAGCCCCAAGAGT
ATCCATTATAAGATTGACCCAAAGGAGCTACATAGGTAAGGGATAAGACTTTTTACCAAGTTCT
GAAGTGAATACTTTTGTGCAGATGAGAAAGAGAGAGTATAAAACTACTATTTCGAACCTGTACT
GCAGTTAGAGGAACTTCACCCGCGGATATGGCAGCCACCACATTGATGACAAGAGCTGCGACAT
TAACCGTGAGCTGAAACTGGATGAACTTTTGAATATTCGCATACACAGATCGACCCCAACGGAC
AACCTATAGGAATGAGACGATTATTAAAATGGATATCTAATTCAGGATAATTAAAAAGATCACA
AATAGCCCCAAAGCCCAAAGGAGGACATTTACGAGGAAAAGAAATTCCAAAAGTATCACGCAAC
AGAAGAGTATCAAAAAGGAGCTTCTTTTATAAGAAATTTGAATCCTTGGTTTCTAAGGATACAA
ACCTTCACAACGGATTCAAAGTTGTCATCCAAGATAATGATGTCTGACTTTTCCTTTGCAACTT
CGGTGCCTTGGATACCCATTGCGAGACCTATATCTGCCTGAAAGTTGGGGGGCAACACAGAAAG
TGTGATCCTCAATAACAGTGTATTTTTAAAGCTTACACATACGAGGAATGTAAATGTATTGAAC
CTCGTGCAGTGCAGGAGCATCATTGGTTCCATCACCAGTCACAGCCACGACGTGTCCCCTCCTC
TTCAGCGATTGCACAAGAAGAAGTTTGTCATTGGGTGATGATCTACCCATTACCTTCAAGTTTA
GCAACAATGTCAGGTACCATTAAATAATGTTCCTCAGTCACAACCAAAATCATAAGGCTCTTAC
AGATATCTCTTCACAAATCCTATCTCTTTCTTCTTCTGAATAGGATCGAAATACTTTTCCTTCA
ATCAGATTAGGCTCACTAGCATCTGAGTCTGAAGCTAATATACCACACTCCAGTGCAATTGCTT
TGGCAGTCTGAATGTTATCACCAGTCACCATACGAACCTGAGGCCAATAGTGGAATTAGAAGAC
TATAGGCCTATGAAGAACAGAGAAGTCTCTAAAAATAAACTAATTATTGAGAGAAATCCTCAGG
GGAAGAAGTAAATGAGATATCTGCGGACCTTGACTCCAGCTTGTTGACACAGTAAAACTGAATT
TTTGACACCTGGGCGACATGGATCCTACAATGTATTGGCAGAAAAGAACTTCAATGAATGGCCC
ATCTGGTATGAAGAACCATATAAAGGCAGATCACAAGATTATTCAAAATGGCAAAAGGGAACTA
GGAATATGCTTACCTTAATACCAACGATAGCCAACAATATAAGATCATCCTCAGGTAATTCCCA
TCTAGAGAGTTGCTCTTCATCAGTTGGAATCTTATCCGCTTCAAATGTTCGGAAGGCAATTGCA
ACACAGCGCAGACTCCTTGCAGCCATATCATCGATAGCATCTTTTAACCCACCCATCTGAAACA
ACAAGACTTATACTCAGAATAAAAAACAAGTATTTCTATCAAGACTCTCATTACCAAATCTGGC
ACTGATTTGGACTTGCAGTATGACATGGTCTTGAGTCAAGACACAATGATAAGTTCAACATTCA
GACAAACTCTATCATGATAAAGAGAAACATAGTTACTGACCTTATCTTCACTCATATCTACAAA
ACTCTCACTCTCATCCATATAGTGCGTGCAGGATCCCAAAACAATTTCGGCAGCACCTTTCCAG
TGAATATGGACACTCGAATCTGGCTGAAAATGAATTAGAAAGTCGTTAGGATGCTGATTGACAA
GTAGAAACAACGATAAGAGAAAAATCAAAAACAAAGCAAAAGATCTACAAAAACTATGGGAGGA
AATGAAAAGAAAAAACATTACTGATTTCACTGCTACACCTCCTCGTTTCTTCTCTGAGTTGAAT
GGAAAAAATTGTACAGCAGAAGACTCAGACTTAAGAGCATCAAAATCCATACCCAACTGCAGTG
TATAAGAAATTAAAAGATTAGTTCTTCTCACGGCTATATATACGGGAACCAGAAAATGTAGCTA
AAGAATAAACCTTTATCGCCCAATTGAGAATTGCTCTTTCTGTAGGAGATCCAGAAACCTGAAT
CTCACCACT
Conservation Information
Conserved circRNAs NA
PMCS 0.134859869
Functional Information
Coding potential Y
Potential coding position 14614314-14611706(-)
Potential amino acid sequence MDFDALKSESSAVQFFPFNSEKKRGGVAVKSPDSSVHIHWKGAAEIVLGSCTHYMDESESFVDM
SEDKMGGLKDAIDDMAARSLRCVAIAFRTFEADKIPTDEEQLSRWELPEDDLILLAIVGIKDPC
RPGVKNSVLLCQQAGVKVRMVTGDNIQTAKAIALECGILASDSDASEPNLIEGKVFRSYSEEER
DRICEEISVMGRSSPNDKLLLVQSLKRRGHVVAVTGDGTNDAPALHEADIGLAMGIQGTEVAKE
KSDIIILDDNFESVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINVVAAISAGEVPLTAVQLL
WVNLIMDTLGALALATEPPTDHLMDRAPVGRREPLITNIMWRNLFIQAMYQVTVLLILNFRGIS
ILHLKSKPNAERVKNTVIFNAFVICQVFNEFNARKPDEINIFRGVLRNHLFVGIISITIVLQSG
EIQVSGSPTERAILNWAIKLGMDFDALKSESSAVQFFPFNSEKKRGGVAVKSPDSSVHIHWKGA
AEIVLGSCTHYMDESESFVDMSEDKMGGLKDAIDDMAARSLRCVAIAFRTFEADKIPTDEEQLS
RWELPEDDLILLAIVGIKDPCRPGVKNSVLLCQQAGVKVRMVTGDNIQTAKAIALECGILASDS
DASEPNLIEGKVFRSYSEEERDRICEEISVMGRSSPNDKLLLVQSLKRRGHVVAVTGDGTNDAP
ALHEADIGLAMGIQGTEVAKEKSDIIILDDNFESVVKVVRWGRSVYANIQKFIQFQLTVNVAAL
VINVVAAISAGEVPLTAVQLLWVNLIMDTLGALALATEPPTDHLMDRAPVGRREPLITNIMWRN
LFIQAMYQVTVLLILNFRGISILHLKSKPNAERVKNTVIFNAFVICQVFNEFNARKPDEINIFR
GVLRNHLFVGIISITIVLQSGEIQVSGSPTERAILNWAIKLGMDFDALKSESSAVQFFPFNSEK
KRGGVAVKSPDSSVHIHWKGAAEIVLGSCTHYMDESESFVDMSEDKMGGLKDAIDDMAARSLRC
VAIAFRTFEADKIPTDEEQLSRWELPEDDLILLAIVGIKDPCRPGVKNSVLLCQQAGVKVRMVT
GDNIQTAKAIALECGILASDSDASEPNLIEGKVFRSYSEEERDRICEEISVMGRSSPNDKLLLV
QSLKRRGHVVAVTGDGTNDAPALHEADIGLAMGIQGTEVAKEKSDIIILDDNFESVVKVVRWGR
SVYANIQKFIQFQLTVNVAALVINVVAAISAGEVPLTAVQLLWVNLIMDTLGALALATEPPTDH
LMDRAPVGRREPLITNIMWRNLFIQAMYQVTVLLILNFRGISILHLKSKPNAERVKNTVIFNAF
VICQVFNEFNARKPDEINIFRGVLRNHLFVGIISITIVLQSGEIQVSGSPTERAILNWAIKLGM
DFDALKSESSAVQFFPFNSEKKRGGVAVKSPDSSVHIHWKGAAEIVLGSCTHYMDESESFVDMS
EDKMGGLKDAIDDMAARSLRCVAIAFRTFEADKIPTDEEQLSRWELPEDDLILLAIVGIKDPCR
PGVKNSVLLCQQAGVKVRMVTGDNIQTAKAIALECGILASDSDASEPNLIEGKVFRSYSEEERD
RICEEISVMGRSSPNDKLLLVQSLKRRGHVVAVTGDGTNDAPALHEADIGLAMGIQGTEVAKEK
SDIIILDDNFESVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINVVAAISAGEVPLTAVQLLW
VNLIMDTLGALALATEPPTDHLMDRAPVGRREPLITNIMWRNLFIQAMYQVTVLLILNFRGISI
LHLKSKPNAERVKNTVIFNAFVICQVFNEFNARKPDEINIFRGVLRNHLFVGIISITIVLQ(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017;Chen et al., 2017a