Detail information of BGIOSGA001785_circ_g.6


General Information
CircRNA Name BGIOSGA001785_circ_g.6
ID in PlantcircBase osi_circ_002018
Alias 1:13312005|13315573
Organism Oryza sativa ssp. indica
Position chr1: 13312005-13315573  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA001785
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA001785_circ_g.3 BGIOSGA001785_circ_g.4 BGIOSGA001785_circ_g.5 BGIOSGA001785_circ_g.7 BGIOSGA001785_circ_g.8 BGIOSGA001785_circ_g.9 BGIOSGA001785_circ_g.10 BGIOSGA001785_circ_g.11 BGIOSGA001785_circ_g.12 BGIOSGA001785_circ_g.13 BGIOSGA001785_circ_g.14 BGIOSGA001785_circ_g.15
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered BGIOSGA001785-TA:6
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATTGTTCACGAGGATCGTATAGATCATTTATGTCCAGTATTTCTTCAGCGTCCGCATAGCCTTC
TTCTGTAAGTAAAACATTTCTCTGCTTTTCATCAACcttccatgtcttcttaggtgaggcctgc
tttttagatataatgacaccatccaatggatcaacaactctgaaacatgatgccagaatcagaa
gtaaatat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTCCATGTCTTCTTAGGTGAGGCCTGCTTTTTAGATATAATGACACCATCCAATGGATCAACA
ACTCTGAAACATGATGCCAGAATCAGAAGTAAATATAAGCAGTGATGCTAACATGTTGAGAACA
GTACAGTTCAATTCCAGTTCTGTACTAGAGAACAATGGTCACATTAGGTGTATTGACAGAATCA
AATGAATGAAATCAAAAGAACCATAATGTCAACATGCCATTTCTAGGAAAGTTCGTCAAAATAG
GAGGTAGGTCCATTGCAGCTTCCAACTCATTCAAGCGGGTGAAATCAATCTGAAGGTTGTGTTA
ACACTAATAAAATCAGAAGAGTTGCAATCCTTTAAGGTTCACTGGGTATGGGTACGTTGGCAGG
TGAGCAGGTCACACTAAGTCACTGTAAAACACCACAAAAGATCTTACCAGTAGTCGCAGCATGG
TTTCTCTGGTGGTTACATATATGTTGAAATCTTGTTATACCGCCTCTAGTAATATACCACTTAC
GTTTAATTTATAAGCTGAAATCCAGTTAATTCATGTCATTCTAGTTATATTTATTTTTTGGTGG
AACTAGTGCAAGCAACAGGCATGCAAGTAAATAAAGAACTGAATCAATACTTGTTTTTGTTAGA
AAACAGTCAGGAGCAGCATATCTGGTGTCATTTGAAATTCTGACAATAAAATTAAATACCTTGG
CATAAGCATCTCACGCAGCTTCAACCTTGCCATGAATTCTGCATTTCCTCCAAGAATAATATCA
GTACCACGTCCCGCCATATTGGTGGCAATTGTCACTGCACCAAGGCGTCCACTCTGAGCTACAA
TTTCTGCCTCCCTCTCTACATTCTCTGGTTTAGCATTGAGGACCTACAGTACAAATTCAAAGTA
AAACTTGAGACGATTTTCGATGTGTTAGGAAATGAAATCATGAGCTTGTGGCTTCCAAAGTTTG
AAGCACATAATCAGAAGGCTAGCATAAATGCTTCTCAGATAGTTCCTTTTTCTATTGCAGTTAA
GCTGTAGTCTTGAGATGGTATAGGGTAGCTGGGGTAGAGAGGGAATAAGGCGGCAGCAGCAGAA
GAGGCTTCCACAAAGAAACAAGGAACATGCAAATGCATAGAATATAGAGAGTGAGGGGTTAACT
GATTTCTATTCCTGTGCCGTGTACCACAATCGATACTGGGTTGCCTTGATCCTCGGCCCCTTAG
CACAACGCCCATGACAGCATGTGTACTGTACTACTGTTCACAGAACAGTATCGCAGCCCATAGC
ATGTCATTCATCACCTTCCTACTAATATTCATCTACTCCAGCTGCGACTCAAGCACTAATTTAT
CTTGGGCAAAAACTTGGGTGGGTGCTAAATAACCTACAGATGGAATGCAAGTAGCAAAAGTTTG
CTCTGAAACATCAACCAAGCTACACATTAATGCACAAAACTCTTTTTTGTGGTGTATGGGGTAT
GAGAATGCAAAGATCAGTATTCTTGTTATAGCATTGCACTAAATGGAAAGTAGCTCAATATTTA
CTGTTTTTAAGACAAGAGGCCAAAGGGCCAGCTTTTAATTGAAAGCCAACAGAGATGAATATTT
ACTGTTAATGAAGCTAACAGGAACAGGCATACCTCATGAGGAATCCCTGCTTCATGCAATTGTT
CTGATAAGGTTTCACTTTGTTCAACACTAGTTGTACCAACAAGCACAGGGCGACCAACTTTGTT
CATTCTTGATATCTCCACGACAGCAGCACGCCATTTTCCATTTGTTGCTCTAAAAACAACATCC
GATTCATCCTACATAGGAAGAAATGAAATCATCTTTTGTCAGAGAAAGGGGTTGGGGAAGTTGA
ATCGGAAGGACATCTCTTTCACAACTATTTAGAATTAAAACACGCAGAGTAGAAAGAAGGCAGG
CACCTTTCGTATCATTGGCTTGTTTGTTGGAACAACGGTAACTTTTAGTTTGTATATGCTTTCG
AACTCTTGGCTTTCCGTAGCAGCAGTTCCAGTCATGCCACATAGTTTCGGAAACTGCCACAGAA
TGAATCAGTTCCCTTAGAAAACAACAAACAGAAAATATTGAAAATAAAGGGGAGATTTACCATT
AAGAAACAAAATGCTAAACAATGGTTAGTACTCCCTTCGCTCCAAAAAGACATGATGTCTAGCA
CTCAAAATTTGTCCCAGAAGAGTTAAGTACCCTCAGTCCACAAATCAAGCAGTTTTATCCCTTC
AATACCCATTAATGAGGGGCACTATAATCTTTTCCCCTCACTACTACACTTTCTTGGAATGGCT
AGAAATCAAGTCTTTTCAGGACAGATGGAGGAGCTATCTCAGTTCACCTTGTATCTCAACTATA
TCAAAGAACTTAACTGTGGTGGTGGTTGAGTCTGCCATCCCACCACAACCCCTAGAGTTGGCAT
GATCTTTTAAGGGTGGATAATTAGATCATTTGTTCAAGTATGGCATGGCAATCTGTGGATTGTT
GTTCATTTGCACATTATGTATGTTCTTCCACAAGTATTCTGCTAGTAACAATGGGTATGATCAA
TGGATGCTTGCCATTTTACATATCATACAATCATGTGTGAGTAGCTTTCCAGCATTGGAAAAAA
ATTGTCACTTGCCTGTAGAAAGAAGTTCTGATAACTTATTGACGCAAGGGTAATTGTTTCATTT
TGTATAGGTACACCTTCTTTAGCTTCAATTGCTTGGTGAAGACCATCACTCCATCTTCTGCCCT
GCCAAAAGGTAACATCTGAAAAGTGAAAACTAAACTAAGATAGATATTGAACAAAAAGATAACC
ATGACTGCAGAAATAATGAAGAATGATGCAAACAAAAAATTTAGCATCAAATACTCACGAATTT
GGAGGAAGATAACTAGGCTGGTACTTAGATCGAATTTAAACTAAATTCTGATCCAACTCCCAAA
CACAACCAAGCTTTTAAAATAGAATGTTTTGCACAAATGGTGTGGACCCACACGCACAACCATG
TAGATCAACCAGTACGTTAATGATTTAGACCACATATGCCACTATTAAATAGCATACTCGAACT
ACAACTTTAACAACATTAAAGGACAGAATATGGAGTAAAATTATCCAATAGCTACAGATTAGTC
TAATCCCTCACTGAACTTGTATTTTGAAACCACAAATTCCATGACAATGAGTTCATCACATAAT
GGAGGGAGTAATTTTCTATGTCAAATAGTTGTTGAGAATTAGAAGTAGAGCATGCATGTACTAG
TCAGGAGGCAACAGAACTAATTAATTTTTCAGCTTTGTGGATGAGTTAATGTTTCACAATTTTG
ATAACAATGATACAACACTTACTGGCATTACTCGACCTGTGAACTCATCCACAATAAGCACTTC
CTTGCTACGGACAATGTAATTCACATCTCTAAGGAAGAGTTCCTTAGCTTTGATTGCATTCAGA
ACATATGAAGCCCATTGTTCACGAGGATCGTATAGATCATTTATGTCCAGTATTTCTTCAGCGT
CCGCATAGCCTTCTTCTGTAAGTAAAACATTTCTCTGCTTTTCATCAAC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential Y
Potential coding position 13315362-13312007(-)
13312056-13315503(-)
Potential amino acid sequence MPMLPFGRAEDGVMVFTKQLKLKKFPKLCGMTGTAATESQEFESIYKLKVTVVPTNKPMIRKDE
SDVVFRATNGKWRAAVVEISRMNKVGRPVLVGTTSVEQSETLSEQLHEAGIPHEVLNAKPENVE
REAEIVAQSGRLGAVTIATNMAGRGTDIILGGNAEFMARLKLREMLMPRVVDPLDGVIISKKQA
SPKKTWKVDEKQRNVLLTEEGYADAEEILDINDLYDPREQWASYVLNAIKAKELFLRDVNYIVR
SKEVLIVDEFTGRVMPMLPFGRAEDGVMVFTKQLKLKKFPKLCGMTGTAATESQEFESIYKLKV
TVVPTNKPMIRKDESDVVFRATNGKWRAAVVEISRMNKVGRPVLVGTTSVEQSETLSEQLHEAG
IPHEVLNAKPENVEREAEIVAQSGRLGAVTIATNMAGRGTDIILGGNAEFMARLKLREMLMPRV
VDPLDGVIISKKQASPKKTWKVDEKQRNVLLTEEGYADAEEILDINDLYDPREQWASYVLNAIK
AKELFLRDVNYIVRSKEVLIVDEFTGRVMPMLPFGRAEDGVMVFTKQLKLKKFPKLCGMTGTAA
TESQEFESIYKLKVTVVPTNKPMIRKDESDVVFRATNGKWRAAVVEISRMNKVGRPVLVGTTSV
EQSETLSEQLHEAGIPHEVLNAKPENVEREAEIVAQSGRLGAVTIATNMAGRGTDIILGGNAEF
MARLKLREMLMPRVVDPLDGVIISKKQASPKKTWKVDEKQRNVLLTEEGYADAEEILDINDLYD
PREQWASYVLNAIKAKELFLRDVNYIVRSKEVLIVDEFTGRVMPMLPFGRAEDGVMVFTKQLKL
KKFPKLCGMTGTAATESQEFESIYKLKVTVVPTNKPMIRKDESDVVFRATNGKWRAAVVEISRM
NKVGRPVLVGTTSVEQSETLSEQLHEAGIPHEVLNAKPENVEREAEIVAQSGRLGAVTIATNMA
GRGTDIILGGNAEFMARLKLREMLMPRVVDPLDGVIISKKQASPKKTWK(-)
MVSLYLKSRPHLRRHGRLMKSREMFYLQKKAMRTLKKYWT*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021