Detailed infomation of each circRNA
General Information | |
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CircRNA Name | BGIOSGA001785_circ_g.6 |
ID in PlantcircBase | osi_circ_002018 |
Alias | 1:13312005|13315573 |
Organism | Oryza sativa ssp. indica |
Position | chr1: 13312005-13315573 JBrowse» |
Reference genome | Oryza_indica.ASM465v1.42 |
Type | e-circRNA |
Identification method | find_circ |
Parent gene | BGIOSGA001785 |
Parent gene annotation | NA |
Parent gene strand | - |
Alternative splicing | BGIOSGA001785_circ_g.3 BGIOSGA001785_circ_g.4 BGIOSGA001785_circ_g.5 BGIOSGA001785_circ_g.7 BGIOSGA001785_circ_g.8 BGIOSGA001785_circ_g.9 BGIOSGA001785_circ_g.10 BGIOSGA001785_circ_g.11 BGIOSGA001785_circ_g.12 BGIOSGA001785_circ_g.13 BGIOSGA001785_circ_g.14 BGIOSGA001785_circ_g.15 |
Support reads | NA |
Tissues | leaf |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | BGIOSGA001785-TA:6 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS |
Functional Information | |
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Coding potential | Y |
Potential coding position |
13315362-13312007(-) 13312056-13315503(-) |
Potential amino acid sequence |
MPMLPFGRAEDGVMVFTKQLKLKKFPKLCGMTGTAATESQEFESIYKLKVTVVPTNKPMIRKDE SDVVFRATNGKWRAAVVEISRMNKVGRPVLVGTTSVEQSETLSEQLHEAGIPHEVLNAKPENVE REAEIVAQSGRLGAVTIATNMAGRGTDIILGGNAEFMARLKLREMLMPRVVDPLDGVIISKKQA SPKKTWKVDEKQRNVLLTEEGYADAEEILDINDLYDPREQWASYVLNAIKAKELFLRDVNYIVR SKEVLIVDEFTGRVMPMLPFGRAEDGVMVFTKQLKLKKFPKLCGMTGTAATESQEFESIYKLKV TVVPTNKPMIRKDESDVVFRATNGKWRAAVVEISRMNKVGRPVLVGTTSVEQSETLSEQLHEAG IPHEVLNAKPENVEREAEIVAQSGRLGAVTIATNMAGRGTDIILGGNAEFMARLKLREMLMPRV VDPLDGVIISKKQASPKKTWKVDEKQRNVLLTEEGYADAEEILDINDLYDPREQWASYVLNAIK AKELFLRDVNYIVRSKEVLIVDEFTGRVMPMLPFGRAEDGVMVFTKQLKLKKFPKLCGMTGTAA TESQEFESIYKLKVTVVPTNKPMIRKDESDVVFRATNGKWRAAVVEISRMNKVGRPVLVGTTSV EQSETLSEQLHEAGIPHEVLNAKPENVEREAEIVAQSGRLGAVTIATNMAGRGTDIILGGNAEF MARLKLREMLMPRVVDPLDGVIISKKQASPKKTWKVDEKQRNVLLTEEGYADAEEILDINDLYD PREQWASYVLNAIKAKELFLRDVNYIVRSKEVLIVDEFTGRVMPMLPFGRAEDGVMVFTKQLKL KKFPKLCGMTGTAATESQEFESIYKLKVTVVPTNKPMIRKDESDVVFRATNGKWRAAVVEISRM NKVGRPVLVGTTSVEQSETLSEQLHEAGIPHEVLNAKPENVEREAEIVAQSGRLGAVTIATNMA GRGTDIILGGNAEFMARLKLREMLMPRVVDPLDGVIISKKQASPKKTWK(-) MVSLYLKSRPHLRRHGRLMKSREMFYLQKKAMRTLKKYWT*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Huang et al., 2021 |