Plant Circular RNA Database

Detail information of BGIOSGA030472_circ_g.1

			
						 General Information
					
						CircRNA Name
						BGIOSGA030472_circ_g.1
					
						ID in PlantcircBase
						osi_circ_007996
					
						Alias
						9:6797912|6801375
					
						Organism
						
							Oryza sativa ssp. indica						
					
						Position
						
							chr9: 6797912-6801375  JBrowse»						
					
						Reference genome
						
							Oryza_indica.ASM465v1.42						
					
						Type  
						
							e-circRNA							
									
						Identification method
						find_circ
					
						Parent gene
						
							BGIOSGA030472						
					
						Parent gene annotation
						
							NA							
					
						Parent gene strand
						+
					
						Alternative splicing
						
							BGIOSGA030472_circ_g.2 						
					
						Support reads
						NA
					
						Tissues
						leaf
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						BGIOSGA030472-TA:8

General Information
CircRNA Name	BGIOSGA030472_circ_g.1
ID in PlantcircBase	osi_circ_007996
Alias	9:6797912\|6801375
Organism	Oryza sativa ssp. indica
Position	chr9: 6797912-6801375 JBrowse»
Reference genome	Oryza_indica.ASM465v1.42
Type	e-circRNA
Identification method	find_circ
Parent gene	BGIOSGA030472
Parent gene annotation	NA
Parent gene strand	+
Alternative splicing	BGIOSGA030472_circ_g.2
Support reads	NA
Tissues	leaf
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	BGIOSGA030472-TA:8

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							ATTCCATGCAAGGCAGCTATGAATAGTGTTGAATGGAACCCCAAGTACAACCTCCTGGCTTACG
CAGGAGACGACAAGAACAAGTACCAGGCTGATGAAGtccaaggttaaagacattgaattgaaag
gccacacagattgtgtagatcagctctgctgggatccgaagcatcctgatacagttgctacagc
agctgctg

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							TCCAAGGTTAAAGACATTGAATTGAAAGGCCACACAGATTGTGTAGATCAGCTCTGCTGGGATC
CGAAGCATCCTGATACAGTTGCTACAGCAGCTGCTGACAAGTCAATTCGCCTCTGGGATGCACG
GAGTAAGTGGTTCCCTTCATCTTTGAAGGTTAAAGAACTAAGATATCCACAGTTGTGTTCAGCA
TTCTCAGCTTCTCTCTGAAATTGATGAATCCCTTTTCGTCACTTTGTTCAATCCCTATGTTCCA
TTTACAATGAACTTGTTGTTACCAGACAAGATGTCTTATTCTTTTGTGTAGTGACTCTACCTGA
AAGTTAGTTTCAGAATTTTTTTAGTTGTACTTCGATTTTTTTCATAGGATTGTACATCATACTT
TTGATTCTCTATTTATAACTCTACAAGATTTGGGCCTGCAGTTTGCCTTTTAAAATTATATTAT
TTATTTGACCCGCTATTTCTCAAACTGTTTGACGTGTTCTTTTCCAGGTGGAAAATGTCAAGTC
GTCGAACTTAGTGGAGAAAACATCAATATCACTTATAAACATGGTGGTACTCAAATAGCTGTTG
GAAACAAGGTATGTATTGCCTAGGCTGTTATCCCTGTTAACTTCAAGAACGGTAGTCATTTATG
ACTAAGGAACTGGTTTTGATTTGCATATATCATGCCAGAAGAGGGTTACAATATTTTGAAAGGA
ATTTATAAAATTCTTTCCAAAGAGAAATGTGTAACTATAATCTGATTTATATTAGATTGAGTGA
TGAGTTATTTGGCAAATTAGCATCTAAATTGCAATGTTCATTCTTGTGTTTGACATGCTCTCTG
TATAAGTATCAATACAACATAGCTCAGTATGGACACACTTGAATATATACATATTGATCCTAAA
TTAGATGGAATTATTTACTTTTTTTGCTATGCAAAGTTAGTAAAGTGTTATTGAGCATGGGGAC
TGGGGAGTGGTGTGTAAATTTTATAATAATTGTAGTAAACCTATTTTTATAAAGTTTACAAGTT
AGTTCGCAAGGTCCCGCGTACACCAATGTGTTTACTTTATGAGTTCTAGTTTTATAAAATTGTA
CAAGTGTAGTAACAGCTGTCACTATGATTTGCAGGAGGATGAGTTGACAATAGTGGATGTTCGG
AAGCTAAAAGCCCTTCACAAATTTAAGTTTAATTATGAGGTACTTTCCACTTGAAGGTTTGAAT
TGTTGAAACATTCTTCTAGCAATTTTCTTCTTCCTTTTGGAATCTTTCGCTGCTCTGAATGAAC
ATGCACATATAGTCATATACCTTTTGAGAAAAAGTAGAGTGGGCATAAGTCGGCAGCATGTGCA
TCTTTGTCTGGAACAGGAAAATTGCCTGCTGGTATTTGAATTAGTACTGACTACTGAGTGTGAA
TTACCTAACTGTTTGATGTACTTTAATTTCATTTGCTGCATTACTTATGTTGCAGTTTTGTAAA
TTTTCTATTTCAACTAGCTAAATGCCCGTACACCTGCTACTGATAAAAATGAATCATATAGCTC
CTCAGATCAGTTAACTTTTCTGAAGTAAATTATTGATTTGTTGTTCCTCAGATAAATGAGATTG
CATGGAACAAAACTGGAGATTTATTCTTCATCACTACTGGACTTGGTAAGATACAAAACCCATA
TGTTGTTTTAAGTTTCAATATCACACCAGTTGGTATCAGTGTAATTACGTTGTTTGCTGTTTAT
GTAGGAAATGTTGAGGTATTTGGTGATCCTTCCCTTGATGACACCCTTCATGTGGTTGGCAAAT
TGAATGCTCATACAGCGGGTTGTTATTGCATTGGAATGGATCCCCTTGATAGGTGATGATTTTT
TCTGTCTTCGCTCATTTGTTCAACATCAACTCACATCTCAGCCAATGACATTTCATTGTAACTA
CATTATCTTTTGAACTTTATGCTATAATCATTAGGTTCTCTGTATGCTGTTTGACTTCGCTTTG
AACTCTAATTCTCTTAATGCCTTATACTGATGCTAGTTGTTTTATGTAGTTAACGATTTTTTTT
TATTTCAAGGTAATATAAAGCATAGGCATGAGTGAAGTTATTTGACATATTATATTTTGGGTAT
TACTAATGTTGTATTCTATCTCGGTCTTTTGACAGTTGATAGTGATACTGGTATATGTAAAAAA
AAGAACTTTCTGTCCAAGCTACCTTTAAGTGAATCTCACCTGTGATAGCACCTAGCCATAGTGA
TTCTATGATGACCCATGCCTAAATATAAATGGGACACTGAATTCAGTGTTTCTCTACTACTCTG
AAAGGCAAGTTTCGTTCGTCTGTGCATGCTTCCTATCAGGAGTGAAGTTTCGTTTACCCGCAGA
AAAAAAAAAAAAAAACAGCCCTCCAAAAGAAGTGGACCCACATATAAAAACGCCCCACTGGTAA
AAAACTGGGATAGAAAAACTGAATAGCACGTCCTTCCCCCAGCTCCCGTTGCAACTAACAGGCA
CCTTTACTAGCATGTAAAAGAAAGGGTGCAAAATAGTTTGCCACTTGTTGCCTTCTACTCCATG
TAAAAGAATGGATTATTTGCTATACACCATTGCAAGTCTTCATGTTAATGTTTGGAGATTTGAG
CTGCTACATGAACCTCAACAAAATTTATTGTGGAAAAGTATCATGTTCTTGTTCGCATGGATAT
AGTGGTATACAAACATGTTTCATGCATTAGTGTAGCTATGCCAAAGTATTGTACATTTGTTCTC
AATTATCTGGTGAATATTTTGTTTCTTTGAGCCCTAAATGGAGCTTAAAATGATTTTGACAAGG
ATACTTACAGAATGTGTTGATGCCAGGTATTTTGCTGTTGGAAGTGCAGATTCACTTGTCAGTC
TTTGGGATGTCAAAGAGCTCCTTTGCATTAAAACCTTTACCAAACTCGAGTATGTTTCGCTGCT
TTTAAACCATACCTTTTTTTTTCTCTCCAATGTATCTAAAATATAGCCATGAATATTTGGACAA
AAAGTTATGTTTAGCTAATTTTGCTATTTTCTCCACACCTCATATTGGAAATAGTCATTCAAAG
AAACAAAGATTAATTAGAGTATACCTTCAGTTGCAAGATGCTTAGAAACATGTACTTTCTTCAT
CTTTTCTTTTTGTTCTTTTTCCAGGTGGCCTGTAAGAACAGTTAGCTTCAATCATACTGGAGAG
TTTCTTGCATATGCTAGCGAAGATCCCTTCATTGACATTGTGAGTAGTTCAACATACTGTAATT
CTAATATGATCCTAAGCTAGCTGTTACCAAAAATAATAATTCTTTTACATTTCTATCCTTCGAT
CAGGCCAATGTTCAAACTGGACGATCGATTCATCAGATTCCATGCAAGGCAGCTATGAATAGTG
TTGAATGGAACCCCAAGTACAACCTCCTGGCTTACGCAGGAGACGACAAGAACAAGTACCAGGC
TGATGAAG
						
					

			
		

Sequences
Splice junction sequence	ATTCCATGCAAGGCAGCTATGAATAGTGTTGAATGGAACCCCAAGTACAACCTCCTGGCTTACG CAGGAGACGACAAGAACAAGTACCAGGCTGATGAAGtccaaggttaaagacattgaattgaaag gccacacagattgtgtagatcagctctgctgggatccgaagcatcctgatacagttgctacagc agctgctg
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	TCCAAGGTTAAAGACATTGAATTGAAAGGCCACACAGATTGTGTAGATCAGCTCTGCTGGGATC CGAAGCATCCTGATACAGTTGCTACAGCAGCTGCTGACAAGTCAATTCGCCTCTGGGATGCACG GAGTAAGTGGTTCCCTTCATCTTTGAAGGTTAAAGAACTAAGATATCCACAGTTGTGTTCAGCA TTCTCAGCTTCTCTCTGAAATTGATGAATCCCTTTTCGTCACTTTGTTCAATCCCTATGTTCCA TTTACAATGAACTTGTTGTTACCAGACAAGATGTCTTATTCTTTTGTGTAGTGACTCTACCTGA AAGTTAGTTTCAGAATTTTTTTAGTTGTACTTCGATTTTTTTCATAGGATTGTACATCATACTT TTGATTCTCTATTTATAACTCTACAAGATTTGGGCCTGCAGTTTGCCTTTTAAAATTATATTAT TTATTTGACCCGCTATTTCTCAAACTGTTTGACGTGTTCTTTTCCAGGTGGAAAATGTCAAGTC GTCGAACTTAGTGGAGAAAACATCAATATCACTTATAAACATGGTGGTACTCAAATAGCTGTTG GAAACAAGGTATGTATTGCCTAGGCTGTTATCCCTGTTAACTTCAAGAACGGTAGTCATTTATG ACTAAGGAACTGGTTTTGATTTGCATATATCATGCCAGAAGAGGGTTACAATATTTTGAAAGGA ATTTATAAAATTCTTTCCAAAGAGAAATGTGTAACTATAATCTGATTTATATTAGATTGAGTGA TGAGTTATTTGGCAAATTAGCATCTAAATTGCAATGTTCATTCTTGTGTTTGACATGCTCTCTG TATAAGTATCAATACAACATAGCTCAGTATGGACACACTTGAATATATACATATTGATCCTAAA TTAGATGGAATTATTTACTTTTTTTGCTATGCAAAGTTAGTAAAGTGTTATTGAGCATGGGGAC TGGGGAGTGGTGTGTAAATTTTATAATAATTGTAGTAAACCTATTTTTATAAAGTTTACAAGTT AGTTCGCAAGGTCCCGCGTACACCAATGTGTTTACTTTATGAGTTCTAGTTTTATAAAATTGTA CAAGTGTAGTAACAGCTGTCACTATGATTTGCAGGAGGATGAGTTGACAATAGTGGATGTTCGG AAGCTAAAAGCCCTTCACAAATTTAAGTTTAATTATGAGGTACTTTCCACTTGAAGGTTTGAAT TGTTGAAACATTCTTCTAGCAATTTTCTTCTTCCTTTTGGAATCTTTCGCTGCTCTGAATGAAC ATGCACATATAGTCATATACCTTTTGAGAAAAAGTAGAGTGGGCATAAGTCGGCAGCATGTGCA TCTTTGTCTGGAACAGGAAAATTGCCTGCTGGTATTTGAATTAGTACTGACTACTGAGTGTGAA TTACCTAACTGTTTGATGTACTTTAATTTCATTTGCTGCATTACTTATGTTGCAGTTTTGTAAA TTTTCTATTTCAACTAGCTAAATGCCCGTACACCTGCTACTGATAAAAATGAATCATATAGCTC CTCAGATCAGTTAACTTTTCTGAAGTAAATTATTGATTTGTTGTTCCTCAGATAAATGAGATTG CATGGAACAAAACTGGAGATTTATTCTTCATCACTACTGGACTTGGTAAGATACAAAACCCATA TGTTGTTTTAAGTTTCAATATCACACCAGTTGGTATCAGTGTAATTACGTTGTTTGCTGTTTAT GTAGGAAATGTTGAGGTATTTGGTGATCCTTCCCTTGATGACACCCTTCATGTGGTTGGCAAAT TGAATGCTCATACAGCGGGTTGTTATTGCATTGGAATGGATCCCCTTGATAGGTGATGATTTTT TCTGTCTTCGCTCATTTGTTCAACATCAACTCACATCTCAGCCAATGACATTTCATTGTAACTA CATTATCTTTTGAACTTTATGCTATAATCATTAGGTTCTCTGTATGCTGTTTGACTTCGCTTTG AACTCTAATTCTCTTAATGCCTTATACTGATGCTAGTTGTTTTATGTAGTTAACGATTTTTTTT TATTTCAAGGTAATATAAAGCATAGGCATGAGTGAAGTTATTTGACATATTATATTTTGGGTAT TACTAATGTTGTATTCTATCTCGGTCTTTTGACAGTTGATAGTGATACTGGTATATGTAAAAAA AAGAACTTTCTGTCCAAGCTACCTTTAAGTGAATCTCACCTGTGATAGCACCTAGCCATAGTGA TTCTATGATGACCCATGCCTAAATATAAATGGGACACTGAATTCAGTGTTTCTCTACTACTCTG AAAGGCAAGTTTCGTTCGTCTGTGCATGCTTCCTATCAGGAGTGAAGTTTCGTTTACCCGCAGA AAAAAAAAAAAAAAACAGCCCTCCAAAAGAAGTGGACCCACATATAAAAACGCCCCACTGGTAA AAAACTGGGATAGAAAAACTGAATAGCACGTCCTTCCCCCAGCTCCCGTTGCAACTAACAGGCA CCTTTACTAGCATGTAAAAGAAAGGGTGCAAAATAGTTTGCCACTTGTTGCCTTCTACTCCATG TAAAAGAATGGATTATTTGCTATACACCATTGCAAGTCTTCATGTTAATGTTTGGAGATTTGAG CTGCTACATGAACCTCAACAAAATTTATTGTGGAAAAGTATCATGTTCTTGTTCGCATGGATAT AGTGGTATACAAACATGTTTCATGCATTAGTGTAGCTATGCCAAAGTATTGTACATTTGTTCTC AATTATCTGGTGAATATTTTGTTTCTTTGAGCCCTAAATGGAGCTTAAAATGATTTTGACAAGG ATACTTACAGAATGTGTTGATGCCAGGTATTTTGCTGTTGGAAGTGCAGATTCACTTGTCAGTC TTTGGGATGTCAAAGAGCTCCTTTGCATTAAAACCTTTACCAAACTCGAGTATGTTTCGCTGCT TTTAAACCATACCTTTTTTTTTCTCTCCAATGTATCTAAAATATAGCCATGAATATTTGGACAA AAAGTTATGTTTAGCTAATTTTGCTATTTTCTCCACACCTCATATTGGAAATAGTCATTCAAAG AAACAAAGATTAATTAGAGTATACCTTCAGTTGCAAGATGCTTAGAAACATGTACTTTCTTCAT CTTTTCTTTTTGTTCTTTTTCCAGGTGGCCTGTAAGAACAGTTAGCTTCAATCATACTGGAGAG TTTCTTGCATATGCTAGCGAAGATCCCTTCATTGACATTGTGAGTAGTTCAACATACTGTAATT CTAATATGATCCTAAGCTAGCTGTTACCAAAAATAATAATTCTTTTACATTTCTATCCTTCGAT CAGGCCAATGTTCAAACTGGACGATCGATTCATCAGATTCCATGCAAGGCAGCTATGAATAGTG TTGAATGGAACCCCAAGTACAACCTCCTGGCTTACGCAGGAGACGACAAGAACAAGTACCAGGC TGATGAAG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS

Conservation Information
Conserved circRNAs	NA
PMCS

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							6797985-6801294(-)
6797930-6800781(-)
6799740-6797919(+)
6801371-6797919(+)
						
						Potential amino acid sequence
						
							MLRIPAELIYTICVAFQFNVFNLGLHQPGTCSCRLLRKPGGCTWGSIQHYS*(-)
MSLTLDFISLVLVLVVSCVSQEVVLGVPFNTIHSCLAWNLMNRSSSLNIGNVNEGIFASICKKL
SSMIEANCSYRPLEFGKGFNAKELFDIPKTDK*(-)
MDPLDRYFAVGSADSLVSLWDVKELLCIKTFTKLEWPVRTVSFNHTGEFLAYASEDPFIDIANV
QTGRSIHQIPCKAAMNSVEWNPKYNLLAYAGDDKNKYQADEVQG*(+)
MKSKVKDIELKGHTDCVDQLCWDPKHPDTVATAAADKSIRLWDARSGKCQVVELSGENINITYK
HGGTQIAVGNKEDELTIVDVRKLKALHKFKFNYEINEIAWNKTGDLFFITTGLGNVEVFGDPSL
DDTLHVVGKLNAHTAGCYCIGMDPLDRYFAVGSADSLVSLWDVKELLCIKTFTKLEWPVRTVSF
NHTGEFLAYASEDPFIDIANVQTGRSIHQIPCKAAMNSVEWNPKYNLLAYAGDDKNKYQADEVQ
G*(+)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	6797985-6801294(-) 6797930-6800781(-) 6799740-6797919(+) 6801371-6797919(+)
Potential amino acid sequence	MLRIPAELIYTICVAFQFNVFNLGLHQPGTCSCRLLRKPGGCTWGSIQHYS(-) MSLTLDFISLVLVLVVSCVSQEVVLGVPFNTIHSCLAWNLMNRSSSLNIGNVNEGIFASICKKL SSMIEANCSYRPLEFGKGFNAKELFDIPKTDK(-) MDPLDRYFAVGSADSLVSLWDVKELLCIKTFTKLEWPVRTVSFNHTGEFLAYASEDPFIDIANV QTGRSIHQIPCKAAMNSVEWNPKYNLLAYAGDDKNKYQADEVQG(+) MKSKVKDIELKGHTDCVDQLCWDPKHPDTVATAAADKSIRLWDARSGKCQVVELSGENINITYK HGGTQIAVGNKEDELTIVDVRKLKALHKFKFNYEINEIAWNKTGDLFFITTGLGNVEVFGDPSL DDTLHVVGKLNAHTAGCYCIGMDPLDRYFAVGSADSLVSLWDVKELLCIKTFTKLEWPVRTVSF NHTGEFLAYASEDPFIDIANVQTGRSIHQIPCKAAMNSVEWNPKYNLLAYAGDDKNKYQADEVQ G(+)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Huang et al., 2021

circRNA

Detail information of BGIOSGA030472_circ_g.1

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