Detailed infomation of each circRNA
| General Information | |
|---|---|
| CircRNA Name | Os08g0472800_circ_g.1 |
| ID in PlantcircBase | osa_circ_037336 |
| Alias | NA |
| Organism | Oryza sativa |
| Position | chr8: 23290006-23293531 JBrowse» |
| Reference genome | IRGSP-1.0.38 |
| Type | e-circRNA |
| Identification method | CIRCexplorer |
| Parent gene | Os08g0472800 |
| Parent gene annotation |
Cytochrome P450 family protein. (Os08t0472800-01) |
| Parent gene strand | - |
| Alternative splicing | NA |
| Support reads | 1 |
| Tissues | root |
| Exon boundary | Yes-Yes |
| Splicing signals | CT-AC |
| Number of exons covered | Os08t0473200-00:5 Os08t0472800-01:6 Os08t0473200-00:5 |
| Conservation Information | |
|---|---|
| Conserved circRNAs | NA |
| PMCS | 0.109504583 |
| Functional Information | |
|---|---|
| Coding potential | Y |
| Potential coding position |
23290061-23290007(+) 23292983-23290007(+) 23293487-23290024(-) |
| Potential amino acid sequence |
MDVPEQRHHLPPLWNQETFVLHVGDCLSEREGDYARHPQALQYNLMRECHAPRLRPRQRPLPAL VGHVDRHLLRLDGFEKLRRVVEVLEDPGEDAGGGVLRREQHADDVVGDLVVGEQRHRAGGAVVA RPHEAAEEVVAAAAAAAAARPPLRHDLAQDRAQPLPRLDRLVVERPREAVGEAVVASLHDGVVR PQLLPVPAAEPAAEDGHDADVERELLHGVEGAGDVAAGPGGERGGDGGVDVRDEGAEGVRGEGG LDEAAEAEVVLALVEEERRRPDHPLLARRVRRLEQPRLRHQHEPRRLRARQHHARAPQQIRLEY LAVP*(+) MVTTPTSNESFFMAWKVLATWPPDQAASVAATAASTSGTRARRESGARAAWTRRRRRRWYSPWW KKSADGPIIRSLLGGYVGLNSLACDTSTNLAASGLASITHGHPSRFVLNISPYLESRRIKLLWI LEVVRVVMDVPEQRHHLPPLWNQETFVLHVGDCLSEREGDYARHPQALQYNLMRECHAPRLRPR QRPLPALVGHVDRHLLRLDGFEKLRRVVEVLEDPGEDAGGGVLRREQHADDVVGDLVVGEQRHR AGGAVVARPHEAAEEVVAAAAAAAAARPPLRHDLAQDRAQPLPRLDRLVVERPREAVGEAVVAS LHDGVVRPQLLPVPAAEPAAEDGHDADVERELLHGVEGAGDVAAGPGGERGGDGGVDVRDEGAE GVRGEGGLDEAAEAEVVLALVEEERRRPDHPLLARRVRRLEQPRLRHQHEPRRLRARQHHARAP QQIRLEYLAVP*(+) MLASPEAARFVLVSQARLFKPTYPPSKERMIGPSALFFHQGEYHLRLRRLVQAALAPDSLRALV PDVDAAVAATLAAWSGGHVASTFHAMKKLSFDVGVVTIFGGRLGRRHREELRTNYSVVERGYNC FPNRFPGTLYHKAIQARKRLRAILSEIVAERRARGGGGGGGGDDLLGGLMRSRDDGTAGAVALL TDDQIADNVVGVLFAAQDTTASVLTWILKYLHDSPKLLEAVKAEQMAIYVANEGGKRPLTWTQT RSMTLTHQVILESLRMASIISFTFREAVADVEYKGFLIPKGWKVMPLFRNIHHNPDYFQDPQKF DPSRFKVRRDIQDESAGVPVRDAGEPGGGEVRAGVAGEAVQADVPAEQGADDRAVGALLPPGRV PPPPPPPRPGRPRPGLPPRPRPGRRRRRRRHARRLVRRPRRQHLPRHEEALVRRRRRDHLRRPA RPPAQGGAEDELLRRGERLQLLPQPLPGDALPQGDPGEEAAARDPERDRGGAAGARRRRRRRRR RPPRRPHAVARRRHRRRGGAAHRRPDRRQRRRRAVRGAGHHRQRPHLDPQVPPRLAEASRSRQG GADGDLRGQRGREAAADVDADEEHDTHASGYTGELEDGEHNLLHVQRGSRRRGVQRFPDSKGVE GDASVQEHPSQPGLLPGSTKV*(-) |
| Sponge-miRNAs | NA |
| circRNA-miRNA-mRNA network | VISUALIZATION |
| Potential function description | NA |
| Other Information | |
|---|---|
| References | Chu et al., 2017 |