Detail information of Os08g0472800_circ_g.1


General Information
CircRNA Name Os08g0472800_circ_g.1
ID in PlantcircBase osa_circ_037336
Alias NA
Organism Oryza sativa
Position chr8: 23290006-23293531  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os08g0472800
Parent gene annotation Cytochrome P450 family protein. (Os08t0472800-01)
Parent gene strand -
Alternative splicing NA
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os08t0473200-00:5
Os08t0472800-01:6
Os08t0473200-00:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CAGCCTCGCCTGCGACACCAGCACGAACCTCGCCGCCTCCGGGCTCGCCAGCATCACGCACGGG
CACCCCAGCAGATTCGTCTTGAATATCTCGCCGTACcttgaatctagaaggatcaaacttttgt
ggatcctggaagtagtccgggttgtgatggatgttcctgaacagaggcatcaccttccacccct
ttggaatc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTGAATCTAGAAGGATCAAACTTTTGTGGATCCTGGAAGTAGTCCGGGTTGTGATGGATGTTC
CTGAACAGAGGCATCACCTTCCACCCCTTTGGAATCAGGAAACCTGACAAAACACCACAAAACA
GATCGACACAAACGTCGTTCAGTCTCACTCGAAATTGAATTCAGTGACGAAAATATATATATGC
GACTTTAACTTGTCGAAAGATACCACTTTGCAAATTAAACACTGAGTGCTACTCTACATAATTA
ATGTTCCTAATTATTATGCCGCTTCTATTATACGACATAATAAATGTTCCCAGAACCACCTCAA
TTGCTTTCCCAATCTCAATTCATTTCTGCAGCTACGCTGCCACTCGAAAATGGAGTGAATCGGT
CGCTAGCTACCGGTGCCGGCCGGGAACAGGAGCAGCTAAGGATGCATCTGGACCGCCCGTTGTG
ATGCTGATGATTCAGATATTAATCGGAACGAGAGGACATGGATGTTTTGCCCCCTTTTATGGCG
AAAAATACACCATCTCATGTCAGTATATCATATCACACAAGGAAGCTGAAATAGGGTGCTCTGC
TGTTCATACAACACTGGAGACGACAATTAACTGTGCCTAAACAAATTAAAATGCATCCCTCTTT
ATTGCCATGTGGCTTATATGCATGAGAAATAATCAAGCCACTTGTTCGGAGCAGCATGATTATG
CTGAGGTGGATATGACGTTACTCATCATGTAGTTTATGTTCCTTAATTTTAATTTTTTTATTTA
CAGTATATCTTTATCTTTGCTACAAAATATGAATTTGTCTGTTGCCCCTATTTCGATTGAAATT
TACTGAACACCTCTCTTCAAGGGGGAGCATGCATGCAGTTGGTTATCAGTCTTATTACAGAAGA
CCACAATATTTTTTTAAAGAAAACATTAACCCTCCCATGATAAACATTAACCCTCCCAAAACGG
TTGGAGTTAATTACTAGCATTTGGTGAGGTTGCTAAGCATTAACCCTCCCAAAACGGTTTACAC
CTTTTCTAGCTAGTCCTAGGAACCTCCAAACTTTGATAGATCAAACAATTAATGGGAAATATGT
TCTACAATATTGCGCATAAAAATATCCTATATATGCATATGCTAGGATTTTTATCTATAGTATG
TGAAAAAAGGAGATTGACTGGCACAATAAATCAACAATTATTCCCAAAAGGTATGATAGATTTC
GATCATTTTTGGCCACTAGATATGCTTGAAGATGTGTATGTTCCTTAACATTGATCTCATGAAT
GCAAGGTTGACTTATGATCCATGATATATATGTGTAGACACCTCGATATTATCCATTTTTAAAC
CCATTTATTTATTTCCATGGCCTTATCCGAGGTTCCATTTTTTTTCTTATTGTTTAATCTTGTA
CGATATTTTCTCAAGGTGACTTTAATTTGGAGTCCATATTATTAGGACCACATCGAGGTGCAAT
GGGAGGAACTGTACATGCATGATCCATATATATGATCCAGCTGGTGGTACAACTGGCTAACGTA
CTGCAAAATGCAAGCTGCTACTGCTAGCTTTTGTTCAGTGACTCCAGTACAGTGTACACTGACT
CCCAATCCATGTTGAACACGTGCTTACCTTTGTACTCCACGTCGGCGACTGCCTCTCTGAACGT
GAAGGAGATTATGCTCGCCATCCTCAAGCTCTCCAGTATAACCTGCATCGAATGGAAACAAAGT
GGCACAAATGAGCACAGTGCTACTGAACTTTTGGCATGTGTTTGGTTCAATTGATATAGGCTAG
GTTGGGGCAAATCCATTTTTCAGGATGTTTGTTTAGAAATAGATGTGATGGATTGATTCCCAAA
AGGAATATTTCCCTAAGATTCGGATCAATTTCATATCTCAAAATTTGGTGGACCAATCTAACTC
ACTTTCTCTCTGTTATTGATATGTGGGCCACCCCCTCCTTCCCTAAGAAAAATAAGATCACTCC
ATCTCTCATGCCAAACAGATAATTGGATTATCCCATTAAAAAAATAAGGATAAGTCTAACTCAT
CCCACCTCATTTCTAAACCAAATAAGAATAATAATTAAGTCTCTCTATATATATCCACACATAT
AGATATACAGTAGATATACACAGCCAAACATATACTTCCAAACACAAAATGCTAGCTAATCTCC
AAACTAAACTAAAGCCATTCTTTTCCGTGATGTGTGATGCAGCAATAGGTGCATATTCGTCTTC
CTTGTAACAATAAAACGGGAGTAAAAACAACAAAGAGGCATGCTTGTACCTGATGCGTGAGTGT
CATGCTCCTCGTCTGCGTCCACGTCAGCGGCCGCTTCCCGCCCTCGTTGGCCACGTAGATCGCC
ATCTGCTCCGCCTGCGCGCGCGCGATCGACACGACGGAAAAAAAAAGCATCGGTGGTTAGCTCA
CCATCGTTCTCGCTCGATCGTGATCGAGTACTTAAACTCTGGTTAATTATCGTTGCGTTTACCT
TGACGGCTTCGAGAAGCTTCGGCGAGTCGTGGAGGTACTTGAGGATCCAGGTGAGGACGCTGGC
GGTGGTGTCCTGCGCCGCGAACAGCACGCCGACGACGTTGTCGGCGATCTGGTCGTCGGTGAGC
AGCGCCACCGCGCCGGCGGTGCCGTCGTCGCGCGACCGCATGAGGCCGCCGAGGAGGTCGTCGC
CGCCGCCGCCGCCGCCGCCGCCGCGCGCCCGCCGCTCCGCCACGATCTCGCTCAGGATCGCGCG
CAGCCGCTTCCTCGCCTGCATGCGCAACGCATGCCGTTTAATTTGCATGATGATCAATGTCGAA
TTCGACAGAGATTTGCGGGTGCGCGCGTGCGTATACCTGGATCGCCTTGTGGTAGAGCGTCCCC
GGGAAGCGGTTGGGGAAGCAGTTGTAGCCTCTCTCCACGACGGAGTAGTTCGTCCTCAGCTCCT
CCCTGTGCCGGCGGCCGAGCCGGCCGCCGAAGATGGTCACGACGCCGACGTCGAACGAGAGCTG
GATACAAAAGAGAGAGAGAACACGAACACCGGTCACGCATTACGTACACGCCGCGCGCGCATAA
CAACAAACACGTCCGGGACGCGCGCGCGCCCCACACGTCACTTAGCTTCACTCGTGTCGCGTGA
CGCCGAGCCGATCGACCCCTGGTCTGTGGCAACTGGCGGCAACTGCGTGTGCGTGTGCGTGCGC
TCACCTTCTTCATGGCGTGGAAGGTGCTGGCGACGTGGCCGCCGGACCAGGCGGCGAGCGTGGC
GGCGACGGCGGCGTCGACGTCCGGGACGAGGGCGCGGAGGGAGTCCGGGGCGAGGGCGGCCTGG
ACGAGGCGGCGGAGGCGGAGGTGGTACTCGCCCTGGTGGAAGAAGAGCGCCGACGGCCCGATCA
TCCGCTCCTTGCTCGGCGGGTACGTCGGCTTGAACAGCCTCGCCTGCGACACCAGCACGAACCT
CGCCGCCTCCGGGCTCGCCAGCATCACGCACGGGCACCCCAGCAGATTCGTCTTGAATATCTCG
CCGTAC
Conservation Information
Conserved circRNAs NA
PMCS 0.109504583
Functional Information
Coding potential Y
Potential coding position 23290061-23290007(+)
23292983-23290007(+)
23293487-23290024(-)
Potential amino acid sequence MDVPEQRHHLPPLWNQETFVLHVGDCLSEREGDYARHPQALQYNLMRECHAPRLRPRQRPLPAL
VGHVDRHLLRLDGFEKLRRVVEVLEDPGEDAGGGVLRREQHADDVVGDLVVGEQRHRAGGAVVA
RPHEAAEEVVAAAAAAAAARPPLRHDLAQDRAQPLPRLDRLVVERPREAVGEAVVASLHDGVVR
PQLLPVPAAEPAAEDGHDADVERELLHGVEGAGDVAAGPGGERGGDGGVDVRDEGAEGVRGEGG
LDEAAEAEVVLALVEEERRRPDHPLLARRVRRLEQPRLRHQHEPRRLRARQHHARAPQQIRLEY
LAVP*(+)
MVTTPTSNESFFMAWKVLATWPPDQAASVAATAASTSGTRARRESGARAAWTRRRRRRWYSPWW
KKSADGPIIRSLLGGYVGLNSLACDTSTNLAASGLASITHGHPSRFVLNISPYLESRRIKLLWI
LEVVRVVMDVPEQRHHLPPLWNQETFVLHVGDCLSEREGDYARHPQALQYNLMRECHAPRLRPR
QRPLPALVGHVDRHLLRLDGFEKLRRVVEVLEDPGEDAGGGVLRREQHADDVVGDLVVGEQRHR
AGGAVVARPHEAAEEVVAAAAAAAAARPPLRHDLAQDRAQPLPRLDRLVVERPREAVGEAVVAS
LHDGVVRPQLLPVPAAEPAAEDGHDADVERELLHGVEGAGDVAAGPGGERGGDGGVDVRDEGAE
GVRGEGGLDEAAEAEVVLALVEEERRRPDHPLLARRVRRLEQPRLRHQHEPRRLRARQHHARAP
QQIRLEYLAVP*(+)
MLASPEAARFVLVSQARLFKPTYPPSKERMIGPSALFFHQGEYHLRLRRLVQAALAPDSLRALV
PDVDAAVAATLAAWSGGHVASTFHAMKKLSFDVGVVTIFGGRLGRRHREELRTNYSVVERGYNC
FPNRFPGTLYHKAIQARKRLRAILSEIVAERRARGGGGGGGGDDLLGGLMRSRDDGTAGAVALL
TDDQIADNVVGVLFAAQDTTASVLTWILKYLHDSPKLLEAVKAEQMAIYVANEGGKRPLTWTQT
RSMTLTHQVILESLRMASIISFTFREAVADVEYKGFLIPKGWKVMPLFRNIHHNPDYFQDPQKF
DPSRFKVRRDIQDESAGVPVRDAGEPGGGEVRAGVAGEAVQADVPAEQGADDRAVGALLPPGRV
PPPPPPPRPGRPRPGLPPRPRPGRRRRRRRHARRLVRRPRRQHLPRHEEALVRRRRRDHLRRPA
RPPAQGGAEDELLRRGERLQLLPQPLPGDALPQGDPGEEAAARDPERDRGGAAGARRRRRRRRR
RPPRRPHAVARRRHRRRGGAAHRRPDRRQRRRRAVRGAGHHRQRPHLDPQVPPRLAEASRSRQG
GADGDLRGQRGREAAADVDADEEHDTHASGYTGELEDGEHNLLHVQRGSRRRGVQRFPDSKGVE
GDASVQEHPSQPGLLPGSTKV*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017