Detailed infomation of each circRNA
| General Information | |
|---|---|
| CircRNA Name | Os07g0476200_circ_g.2 |
| ID in PlantcircBase | osa_circ_033768 |
| Alias | NA |
| Organism | Oryza sativa |
| Position | chr7: 17233265-17236844 JBrowse» |
| Reference genome | IRGSP-1.0.38 |
| Type | ue-circRNA |
| Identification method | CIRCexplorer, PcircRNA_finder |
| Parent gene | Os07g0476200 |
| Parent gene annotation |
Tetratricopeptide TPR-1 domain containing protein. (Os07t0476200 -01);Similar to PAF1 complex component. (Os07t0476200-02);Simila r to PAF1 complex component. (Os07t0476200-03) |
| Parent gene strand | - |
| Alternative splicing | Os07g0476200_circ_g.1 |
| Support reads | 6 |
| Tissues | seed |
| Exon boundary | Yes-Yes |
| Splicing signals | CT-AC |
| Number of exons covered | Os07t0476200-02:8 Os07t0476200-03:2 Os07t0476200-01:8 |
| Conservation Information | |
|---|---|
| Conserved circRNAs | NA |
| PMCS | 0.122732321 |
| Functional Information | |
|---|---|
| Coding potential | Y |
| Potential coding position |
17236805-17233346(+) 17236675-17233267(-) |
| Potential amino acid sequence |
MGIFSPAFFRRFRASSTVRFVFCRVEAENFCIETPTLNRNK*(+) MAEQSFKEALGDGFWVSIIDGSVGSSVVNWSIQYRDQSFFQQLEEEGTPLELPWDKVTTLFNYA RLFEELHDTVKASLFYRLIIFKYPDYIDTYLRLAAIAKEKNNLQLSIELIGDALKIDDKYPNAL SMLGSLELQGDETWLTAKEHFREAKDASEGKDTYSMLQLGNWNYFAANRPEKKAPKFEATHREK AKELYSNVLKQHHGNMFAANGIGILYAEKAQWDIAKELFTQVHEAASGSIFVQMPDVWINLAHI YFAQGFFQQAVKMYQNCLRKFFYNTDATILLYLARTHYEAEQWQDCRKTLLRAIHLAPSNYLLR FNVGVSMQKFSASTLQKTKRTVDEARNLLKKAGEKIPIELLNGIGLLHFEKGELEMAEQSFKEA LGDGFWVSIIDGSVGSSVVNWSIQYRDQSFFQQLEEEGTPLELPWDKVTTLFNYARLFEELHDT VKASLFYRLIIFKYPDYIDTYLRLAAIAKEKNNLQLSIELIGDALKIDDKYPNALSMLGSLELQ GDETWLTAKEHFREAKDASEGKDTYSMLQLGNWNYFAANRPEKKAPKFEATHREKAKELYSNVL KQHHGNMFAANGIGILYAEKAQWDIAKELFTQVHEAASGSIFVQMPDVWINLAHIYFAQGFFQQ AVKMYQNCLRKFFYNTDATILLYLARTHYEAEQWQDCRKTLLRAIHLAPSNYLLRFNVGVSMQK FSASTLQKTKRTVDEARNLLKKAGEKIPIELLNGIGLLHFEKGELEMAEQSFKEALGDGFWVSI IDGSVGSSVVNWSIQYRDQSFFQQLEEEGTPLELPWDKVTTLFNYARLFEELHDTVKASLFYRL IIFKYPDYIDTYLRLAAIAKEKNNLQLSIELIGDALKIDDKYPNALSMLGSLELQGDETWLTAK EHFREAKDASEGKDTYSMLQLGNWNYFAANRPEKKAPKFEATHREKAKELYSNVLKQHHGNMFA ANGIGILYAEKAQWDIAKELFTQVHEAASGSIFVQMPDVWINLAHIYFAQGFFQQAVKMYQNCL RKFFYNTDATILLYLARTHYEAEQWQDCRKTLLRAIHLAPSNYLLRFNVGVSMQKFSASTLQKT KRTVDEARNLLKKAGEKIPIELLNGIGLLHFEKGELEMAEQSFKEALGDGFWVSIIDGSVGSSV VNWSIQYRDQSFFQQLEEEGTPLELPWDKVTTLFNYARLFEELHDTVKASLFYRLIIFKYPDYI DTYLRLAAIAKEKNNLQLSIELIGDALKIDDKYPNALSMLGSLELQGDETWLTAKEHFREAKDA SEGKDTYSMLQLGNWNYFAANRPEKKAPKFEATHREKAKELYSNVLKQHHGNMFAANGIGILYA EKAQWDIAKELFTQVHEAASGSIFVQMPDVWINLAHIYFAQGFFQQAVKMYQNCLRKFFYNTDA TILLYLARTHYEAEQWQDCRKTLLRAIHLAPSNYLLRFNVGVSMQKFSASTLQKTKRTVDE(-) |
| Sponge-miRNAs | NA |
| circRNA-miRNA-mRNA network | VISUALIZATION |
| Potential function description | NA |
| Other Information | |
|---|---|
| References | Chu et al., 2017 |