Detail information of Os07g0476200_circ_g.2


General Information
CircRNA Name Os07g0476200_circ_g.2
ID in PlantcircBase osa_circ_033768
Alias NA
Organism Oryza sativa
Position chr7: 17233265-17236844  JBrowse»
Reference genome IRGSP-1.0.38
Type   ue-circRNA
Identification method CIRCexplorer, PcircRNA_finder
Parent gene Os07g0476200
Parent gene annotation Tetratricopeptide TPR-1 domain containing protein. (Os07t0476200
-01);Similar to PAF1 complex component. (Os07t0476200-02);Simila
r to PAF1 complex component. (Os07t0476200-03)
Parent gene strand -
Alternative splicing Os07g0476200_circ_g.1
Support reads 6
Tissues seed
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os07t0476200-02:8
Os07t0476200-03:2
Os07t0476200-01:8
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AACAAACCTCAAGCTCTCCCTTCTCAAAATGAAGTAGTCCAATTCCATTGAGCAATTCAATGGG
TATTTTCTCTCCTGCCTTCTTTAGGAGATTCCGAGCttcatcaactgttcgttttgtcttctgt
agagttgaagctgagaatttctgcatcgaaacacctacattgaatcgcaataaataatttgatg
gagccaaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TTCATCAACTGTTCGTTTTGTCTTCTGTAGAGTTGAAGCTGAGAATTTCTGCATCGAAACACCT
ACATTGAATCGCAATAAATAATTTGATGGAGCCAAATGAATAGCTCTCAGCAATGTTTTCCTGC
AGTCTTGCCATTGTTCAGCTTCATAGTGTGTCCGGGCAAGATATAGAAGTATAGTTGCATCTGT
GTTGTAGAAGAACTTCCGCAGGCAGTTTTGGTACTGCAAGAAAGAATCAGTAACTTTTATCAAC
TTCTTTCCTGTCTTAAATATTTATCTGCCCATGCATGTCTGTCTATGTGGAGAGAGTAGTACCA
TTTTCACAGCTTGCTGAAAAAAACCTTGAGCAAAATATATATGAGCCAAATTTATCCAAACATC
AGGCATCTGGACAAATATACTTCCTGAAGCAGCTTCATGTACCTAATTCATTTCAAATTGCTAA
TGTAAATTTCTCATAATTCACAGTAATCATATAGAATGATGAATAGTAGTCTCCCCTGACCTGT
GTAAATAACTCCTTGGCAATATCCCATTGGGCTTTCTCAGCATATAAGATCCCAATACCATTTG
CAGCAAACATATTACCATGGTGCTGCTTTAGTACCTGCATCAGACATTGAGATCTCAAAAGTGA
GCAAAACAAGCACTTAATGCGGCCACACTATCCCCACCAAATGCTTCTGCTACCAAACAAGATT
TGGTTGTAAGCAATACTTGCTCATGTGTACAACAAATCAAACCAAAGTGCATCCAAACAATGAG
TGCACATATTATCACATTGTGCCATATATTTTATTGAAGTACTACAATAGCTCCAAATCAAGCT
ATTCATTTCCTTGATTTTCTATAGACTACATAATTGCATTTCAAATGGAAGTGACTTTTATGAT
TTCCCAAATTCAATGAGATACCACCTTACCCTCTAGTTTTTAATATCATATATTTAAAAGAATA
TATTTATAAGGGTAGTATTACGGAAGTACTTTTATGACAAATTCACTCACCATTTTCTTGAATC
CCAGAAACATATTGTAGATGATGTCTTTGGACATCATCATAAATTGACTACACCAATTCTATTA
TTTCATTGTTTTCAATTGGGGAGAGTAGTTGCAACTTCTAGGAAACCATGGTTTCAGGAGTCGA
TGATTTAGCATAGCAAGAAAATAGAAGTTAAACTAAACATTAGACTTTACCCAAAAAGGAAAAA
AGAAAAGCTAAAACTGAACTTTTTGCTAAATTCCTAAAAAGCTACTAATAGTTAAATTTGCTCC
TTTGACCAAGTAAACAAATTAATCAAACCGTTAAAGGCAAGATTAATCTGAGCAGGTGATCGGG
TATATTTAATCAGCCAACCTACACAAAATATAATCCTGATCCTCTGAAATTGGTGTTGAGCATA
AAGCAACATACATTTGAATACAGTTCCTTGGCTTTCTCCCTATGAGTGGCCTCAAATTTTGGGG
CCTTTTTCTCAGGGCGATTAGCAGCAAAGTAATTCCAGTTCCCCTGTAACAACATGGAAAAATC
GTTTTTAAAATAGAGAAAAAACAATTGATTAGTTACATAAAATGATTGCATCAAACCAGCAGAT
GTAAACCTATTGTGGGAAAACATCAAACTAAGATTATGCTAGCATGCCCTAACTCAATGGTAAA
TTTGGTGATATGCTAGTGATTCAAAATATATAAAGCTCAATGCATCATCTCCTGCCAGCTGGTA
GCACTTGTCCAGACATTACACGCCAAACAAAGTTATCAGTAATTACAGGCAACTAATTCATAAC
GAGGAGTTTACTTCTTCACTTTAACCATAACAATTCTTATCCATATCTTCCTGTGTAATTTAAG
TCCCCATTTGGGCTTTAGTTTTCAAAAGAAAAATAAGAACAAAGTCTATAACAAGTTTGTTCCC
AATTTGGTACACAAACCATCTGCCTTTTTCGAACAAAAGGTTGTTAATCAAACCAGTAAAGTGA
TAAGTAGATAAATGTACTAGAGTTAAGTAAGCTCACATACCAATTGAAGCATAGAGTATGTGTC
TTTTCCCTCAGAAGCATCTTTAGCTTCACGGAAATGCTCCTTTGCAGTAAGCCAGGTTTCATCA
CCTTGGAGTTCAAGACTTCCAAGCATAGAAAGTGCATTTGGATACTTATCATCTATCTTTAGAG
CATCACCTATCTACAACAAATATATTATAGTTATTCTTAATAATAAGAAGAAGAAAAATGCAGA
AGCATTCATACTCACCAGCTCAATGCTCAGTTGGAGATTGTTTTTTTCTTTTGCAATAGCTGCT
AACCTAAGATAAGTATCAATGTAGTCTGGATACTGTCATGTAAAAATAAAAGGAGTTAAAATTA
GAATGTACAGCACACAGTACCCTAAAAAAATAGTTTCAAAAGGGGTCCTGTTGTTTTCACATTT
TCAGGGAGAATGTACAACAAATACCTATGTACCAAATATATTCTCTGGAACAATTATTTGGTAC
ATATATTTGGAAATAATGGGCAAATGGTTATGAAGGAAGTATATATCTTTTCAAGCATAATAGT
ATCCATAATAGCTTGTGACATGAGCTATGACAATTGACATATAAACATACATGCAAACAAGATG
CAATATAAAATAATTGTGGTCATTTCACAAGCCTTGGCATTAAACATATCTTAAATTTTTCTGT
AATAATCAAGACAAATCAAATTACTGAGGAATATAAATCATTCTTAACTGTCATAATTGATGAA
CATGGAAATTATATCTTATATCATGAGTTTTCAAACCCTGTGATTGATGCAATATCATCTATAA
GCATGGAAAACACATCAACTAATTTAACAAGGGAAGACTATAAAGCAGAGACCACCACTGCATA
TATCAGTGATGCTACACAAACAAAATAAAATGCAAAGGTATGGAACTCCATGCAAACATCACAA
CGTAACAAATAAAAACATTTGGAGGCTGCGACGCCAATAAACATCAGGAATAGGATGTGTGAGC
AAAGGTCAGAATTTAAATATGTTCACATTCTTTTCAGTGCATGCTCCCCTGCTTGGGTAAACTT
AATATCGTAACATGACTATATGAAAGAACAGACTCTGTTGAGCTGCATGATGGCACACATGTGG
TGGGAATGGCAGTACCTTGAAAATAATGAGGCGGTAAAAGAGACTGGCTTTCACAGTATCATGG
AGCTCTTCAAACAATCTTGCATAGTTAAACAATGTAGTGACCTTATCCCAAGGTAATTCAAGAG
GTGTTCCCTCTTCTTCAAGTTGTTGAAAAAAACTCTGGTCCCTATACTGAATACTCCAGTTAAC
CACGGAGCTACCTACACTGCCATCTATAATTGAAACCCAAAAGCCATCTCCAAGTGCTTCCTTA
AAACTTTGTTCAGCCATCTGAAAAAGCAAACAATAAAAATACCATCAGTTATAAATGACTGTAA
AGTATTTTATATGGAGTGTGCAGTAACAAACCTCAAGCTCTCCCTTCTCAAAATGAAGTAGTCC
AATTCCATTGAGCAATTCAATGGGTATTTTCTCTCCTGCCTTCTTTAGGAGATTCCGAGC
Conservation Information
Conserved circRNAs NA
PMCS 0.122732321
Functional Information
Coding potential Y
Potential coding position 17236805-17233346(+)
17236675-17233267(-)
Potential amino acid sequence MGIFSPAFFRRFRASSTVRFVFCRVEAENFCIETPTLNRNK*(+)
MAEQSFKEALGDGFWVSIIDGSVGSSVVNWSIQYRDQSFFQQLEEEGTPLELPWDKVTTLFNYA
RLFEELHDTVKASLFYRLIIFKYPDYIDTYLRLAAIAKEKNNLQLSIELIGDALKIDDKYPNAL
SMLGSLELQGDETWLTAKEHFREAKDASEGKDTYSMLQLGNWNYFAANRPEKKAPKFEATHREK
AKELYSNVLKQHHGNMFAANGIGILYAEKAQWDIAKELFTQVHEAASGSIFVQMPDVWINLAHI
YFAQGFFQQAVKMYQNCLRKFFYNTDATILLYLARTHYEAEQWQDCRKTLLRAIHLAPSNYLLR
FNVGVSMQKFSASTLQKTKRTVDEARNLLKKAGEKIPIELLNGIGLLHFEKGELEMAEQSFKEA
LGDGFWVSIIDGSVGSSVVNWSIQYRDQSFFQQLEEEGTPLELPWDKVTTLFNYARLFEELHDT
VKASLFYRLIIFKYPDYIDTYLRLAAIAKEKNNLQLSIELIGDALKIDDKYPNALSMLGSLELQ
GDETWLTAKEHFREAKDASEGKDTYSMLQLGNWNYFAANRPEKKAPKFEATHREKAKELYSNVL
KQHHGNMFAANGIGILYAEKAQWDIAKELFTQVHEAASGSIFVQMPDVWINLAHIYFAQGFFQQ
AVKMYQNCLRKFFYNTDATILLYLARTHYEAEQWQDCRKTLLRAIHLAPSNYLLRFNVGVSMQK
FSASTLQKTKRTVDEARNLLKKAGEKIPIELLNGIGLLHFEKGELEMAEQSFKEALGDGFWVSI
IDGSVGSSVVNWSIQYRDQSFFQQLEEEGTPLELPWDKVTTLFNYARLFEELHDTVKASLFYRL
IIFKYPDYIDTYLRLAAIAKEKNNLQLSIELIGDALKIDDKYPNALSMLGSLELQGDETWLTAK
EHFREAKDASEGKDTYSMLQLGNWNYFAANRPEKKAPKFEATHREKAKELYSNVLKQHHGNMFA
ANGIGILYAEKAQWDIAKELFTQVHEAASGSIFVQMPDVWINLAHIYFAQGFFQQAVKMYQNCL
RKFFYNTDATILLYLARTHYEAEQWQDCRKTLLRAIHLAPSNYLLRFNVGVSMQKFSASTLQKT
KRTVDEARNLLKKAGEKIPIELLNGIGLLHFEKGELEMAEQSFKEALGDGFWVSIIDGSVGSSV
VNWSIQYRDQSFFQQLEEEGTPLELPWDKVTTLFNYARLFEELHDTVKASLFYRLIIFKYPDYI
DTYLRLAAIAKEKNNLQLSIELIGDALKIDDKYPNALSMLGSLELQGDETWLTAKEHFREAKDA
SEGKDTYSMLQLGNWNYFAANRPEKKAPKFEATHREKAKELYSNVLKQHHGNMFAANGIGILYA
EKAQWDIAKELFTQVHEAASGSIFVQMPDVWINLAHIYFAQGFFQQAVKMYQNCLRKFFYNTDA
TILLYLARTHYEAEQWQDCRKTLLRAIHLAPSNYLLRFNVGVSMQKFSASTLQKTKRTVDE(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017