Detail information of Solyc10g081460.1_circ_g.2


General Information
CircRNA Name Solyc10g081460.1_circ_g.2
ID in PlantcircBase sly_circ_003195
Alias NA
Organism Solanum lycopersicum
Position chr10: 62512047-62516277  JBrowse»
Reference genome SL2.50.38
Type   e-circRNA
Identification method CIRI
Parent gene Solyc10g081460.1
Parent gene annotation protein_coding
Parent gene strand -
Alternative splicing Solyc10g081460.1_circ_g.1
Support reads 6
Tissues fruit
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Solyc10g081460.1.1:10
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCAAAATTGCAGCACATGGGTCCACTGTGATATTCAGTCCTGGGATTGTGTGACGAGCTAAGAA
AGATGGCAGGCTGTCTGGACTTCCAAAAAGCATAGCccgagattaattaataagtagacgttga
tgagaatgcaggcaatcggcagaagtggtacaaatggacaagtgaaacctgaataggagaaaaa
aaaatatg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCGAGATTAATTAATAAGTAGACGTTGATGAGAATGCAGGCAATCGGCAGAAGTGGTACAAATG
GACAAGTGAAACCTGAATAGGAGAAAAAAAAATATGCTTTAAATTTGTCCTGGTAGATGTATTA
ACAGCCACTACTTTCGGTCAAGCACAAGCAATCTAATTAGATAATTGATATGGCGATGATCACG
AGTAGACCACTACCACAAAACACCAAAGGTCATTTGACCTAAGCTCAAAGCTAATGGAGTGAAA
GCCTTTAATCAGGTGATAATGATATATATAACATACCTCCGGTGTGTCCAAAGCTGTGCCTCGC
ATCATCCTGGTCTATGCAAGTGAGTATTATCAAACCAGATATCAGAAGCAAACCACCAATTCCG
GACAGTGCGTACCTTGCAGGACTGATCACAGCAATAAGGTAGAAGAGTCAAAAATTTTGTACAA
GAAAATGTAAGGCTTAAGACATATTAACTACCTCAGCATTTGTGACAAAGACATCAAGAATATC
CCAATATTTAGATCATATTTATTGATAGTAATCAGAATCTATGTGCATGTCCAGAAATACATTC
ATGAATATCTATATCCAAGTTGGCGTACAAACTCTCCTGGTATTTAACCCTTATTACACATTTG
CTCACTTCTTAAATCTCCTCTGTATCCCTCCAAATTTAAAGAAATGAACAGATAAAATCACAGA
GAAAGAGAGCTCACTTAGACAAGTTAACAATTGAAGCAGCGGATGTAACGATGCATACTCCAAT
ACAGATGAACAAAATTGTGCAGCCAGCAACTTTCCGCCTTTGGCTTACTAGATCTGTGACAAAA
TCAAGAGAAGTAAATGATAGTACGAATTTTCTACTTAGATTATTCCTTGTAAATGTAGGAATAT
AGTGAACACATCTTTGACTCCGAAATGCAATGTAGATAACAGAGACCGGAGACGAAGGGAAGGT
GCGCCTAGCGAGCATCAGTTTTTTTCATTTTTTATTGTTGAATTACTCAGTTGGATCATGAGGT
AACTCAGGTAAGGATATATAATTTCTATATATGGTAGGAGAAAGAGACAAAGACTATAATCAAT
AAACCCAAGTCAATTCTTATTGCTTTTTCCTTATTCAGATGCTTTTCACCACTTGATTTCCTAT
ACTTCATTTCACCATACCTAACACGACCTATTAGATTTATTTTGGTCGCAATTTCTGAATTTTA
TAAAGCATAGCATGATCATTTTAGCACAAACTAGTAGTCACATCGGAATAATTAACCGCTGCCT
ACTACCAAGAATTTAATACTTACAGCTCAACTTTGCTGCTGCTTTTTCCGCAAGAGGATGCCCA
ACTGAAATCTCGCCTAACAATGGAGTGCTATCACCAGAGGTCACAGCTGGAATTTTGGTTTTCT
CGACATCCATATCTGAACTACTACTACAGCTACTACGTCGCAGGCGTACTGAGTCAATTGCCTC
CTGATAAGAGGAGGGAACTGGGACCTCGTCTGGTGGTACGTATCGGAGAATCAATACCGAAATA
GCCACCATTGTAAACGCAAGAAGTGTACCAACACTGACCTGTAAAGACAGAAACATAATCAAAA
CAAGCACAAACCGTGAGTAGGAAACTAAGACTTCTGAAATTTACAATGTTACATGAATCAAAAC
ATGCTAATTACATCACATTAAACACAAATCACAAGCAGAGAGCCAGAGGGCATAGACATTTTCC
CTTCATAAGTAAGCTATAACCATACAAACGTCAAAAAGATATAACATCTTATTCCTGACTAATT
TTTTGGAACTGGTATTTTATTACCAAATAATTAGAGTTGTGTCTTGTGAATCACTCAAAACCAC
ACTTCCAAAGTTTGCTCAACACGATTGAAAAATATGACAAATTATCATGTCATAATCTATTAGT
TAACAATGAAAATCATCACTTAAGCTTACAAGGATTTTCACGTAATAATCATGTTGTTTGCTTA
ATTCTTTCTAACAAAGGAGGAGTTACAAGCCTCAAGATGAAAAAAGAATGAAACAGCTAAAGGA
TACGAAAAGGGAGATTGTTTTGAGCCAAAAACAAATGTTCATCCTAGATATCACTCTCTTATTG
TCTTTGTCCCCTCACTCCAAAACAAGGAGAACAGCACACAACAAAGGGAACAAAAAATACATAA
ATTGATATTTTTGATGTGTTCCAACACCATATCAAACATGCTACAAGTCATATTTTGACACAAG
CCACTATGTGTTGAAGTACTCAAGACATTTCAATTTGCAGAAGATTCAGTCCAAATAGGAAGAA
AAGGAACAAGTTAATATCACTCAGATGATTATGGAGGACTTAACTCTGGCTTTAAATATATAAT
ATAATACGTCCAGAAAGTGAACGTACCATTCCTGACAACTGTTCAACATTCATGAAAAATGCTA
AGGTTCCAGAAAGTAAACCAGTTGCTATAGTGCCCTTAATAGGAACTTGAGTCCGCTTGTTAAC
ATCTGAGAAAAATGAAGGCAGCAATCCATCCCGAGCCATTGCCATAAGTATCCGTGGCTAAAAT
CACAAAAAATCAATGTTAATGCCAGAAGTACAAGTATGAAAAAGAATCAACTCTACCTATCCCT
CTCTCAGAGAGTGAGAACACAAGTATGTCCAATAATATAGGATGTAAAATATAAGGCTCAAAGT
GGTTATAAGTAACATGCAATCAAGTTTCCCATGTAACATGGTTGAGTATTACAGTACAACCAAG
AGGAAAGGTTTAATTTGTTGGAGAAGGATTACAAAGTATTTCTGGGAATTCTGGGAAAGATTAC
CAAGTATTTGGTACAGAAAGTTATACATCTCAATAGATGTAGCAAGTCAAATAGTTTTAAACAC
CCCAATGAAGTTTATAGCACTAAGAATCTAATCAGACTTTGTGTCTTAAACAATTTCAAGCTAC
GTAGACTCCAAAATCTACATGATGCAGCTTGCGTACCTGAGGCATTATAGAACCCATCAATGTT
GAGCAAAGAGAAGTACAAGCTCCAATAGTTATTATATATCTGTATTGAGATCCAGAGGAAGTAC
ATTAGAATATAGAATAAAGAATAAGACAGTAAAAAGGCAGTTTCACATCAAATAGTTTAGCGTC
AATAATAAGACTAACTGCAATATCAATAGGCCAAAAAGATTAACTTACGCTGCCCAATTAATTC
CATGGCTTGCAAATGCAGAAGAGATTGGTGTATCTGGATCCATAGCATAATAGGGTACCAAACC
AACAATAACTGCAGAGACTAACATGTAGAGAGAGCAGCATATTGATAATGCAAAACCAATTCCC
ATTGGCAGGTCACGTTGAGGATTCTTCACCTTTTTAGAGATCAAAAAGTAGAAATAAATCAGAT
GGTAAATTTAAAAGTCCAAGAATCTTCAACAGGGATAATCCCTCCGTTTCAATTTGTTTGTCTT
ACTTTCCTCTTTAGTCCATTTTAAAAAGAATGTCTCTTTCCCTTTTTGGCAACTCTTTTAGTTT
TAACTTTTCACGTGGTATGTTTAAGACTAGAAGATTAAAGGGCATTTTGGAACATGCATCCTAA
ATATCTTTAGTTTAAGACCACCAGAGTTAAATGTCTTCTTTACTCAAGAACAATGTATCAAGTC
AAAACCAACCAAACAAATAAAAACAGCGGGAGTAAAGTATATACAGACTTGGGCAATACCTCCT
CAGCTGTACTAGCAACTGAATCAAACCCAATGTAGGCAAAGAAGACAGTTGAAGCTCCAGCAAG
CATTCCATCGACTCCATAAGGAAAATACCTATCAATTAAAGAAAGATTGAGAAAGAAGATCGAT
AGGAGGAGAGCGCATAAGAATGCGTGTGCAGGACAGCCAATTACCCAACAGGAAGCTCATAGCC
TGGCCATCCTGCTTTGTAGCCCAGATATCCACCAGCAATAATTACAAAGGCCATGACACATACA
TTTACTGAAGTGACAAATCCTTGTACCACGGTACTCTGCAAAAATGTAATTGAGCTGACATTTA
ATGAAGCACAAACTACAAACTACAAAGAAAGAGATGATTATTTGGATATGAAAAATACCTCCTT
GATCCCCACACACAGAAGTCCAGTGACTAGAAAAACCAAAATTGCAGCACATGGGTCCACTGTG
ATATTCAGTCCTGGGATTGTGTGACGAGCTAAGAAAGATGGCAGGCTGTCTGGACTTCCAAAAA
GCATAGC
Conservation Information
Conserved circRNAs NA
PMCS 0.142627937
Functional Information
Coding potential Y
Potential coding position 62516276-62516237(-)
Potential amino acid sequence MLFGSPDSLPSFLARHTIPGLNITVDPCAAILVFLVTGLLCVGIKESTVVQGFVTSVNVCVMAF
VIIAGGYLGYKAGWPGYELPVGYFPYGVDGMLAGASTVFFAYIGFDSVASTAEEVKNPQRDLPM
GIGFALSICCSLYMLVSAVIVGLVPYYAMDPDTPISSAFASHGINWAAYIITIGACTSLCSTLM
GSIMPQPRILMAMARDGLLPSFFSDVNKRTQVPIKGTIATGLLSGTLAFFMNVEQLSGMVSVGT
LLAFTMVAISVLILRYVPPDEVPVPSSYQEAIDSVRLRRSSCSSSSDMDVEKTKIPAVTSGDST
PLLGEISVGHPLAEKAAAKLSYLVSQRRKVAGCTILFICIGVCIVTSAASIVNLSNPARYALSG
IGGLLLISGLIILTCIDQDDARHSFGHTGGFTCPFVPLLPIACILINVYLLINLGLCFLEVQTA
CHLS*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zuo et al., 2016