Plant Circular RNA Database

Detail information of Os08g0122800_circ_g.6

			
						 General Information
					
						CircRNA Name
						Os08g0122800_circ_g.6
					
						ID in PlantcircBase
						osa_circ_035684
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr8: 1244151-1247989  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							u-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							Os08g0122800						
					
						Parent gene annotation
						
							Conserved hypothetical protein. (Os08t0122800-01);Kringle, conse
rved site domain containing protein. (Os08t0122800-02)
							
						Parent gene strand
						+
					
						Alternative splicing
						
							Os08g0122800_circ_g.1 Os08g0122800_circ_g.2 Os08g0122800_circ_g.3 Os08g0122800_circ_g.4 Os08g0122800_circ_g.5 						
					
						Support reads
						1
					
						Tissues
						root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os08t0122800-02:3
Os08t0122800-01:3

General Information
CircRNA Name	Os08g0122800_circ_g.6
ID in PlantcircBase	osa_circ_035684
Alias	NA
Organism	Oryza sativa
Position	chr8: 1244151-1247989 JBrowse»
Reference genome	IRGSP-1.0.38
Type	u-circRNA
Identification method	CIRCexplorer
Parent gene	Os08g0122800
Parent gene annotation	Conserved hypothetical protein. (Os08t0122800-01);Kringle, conse rved site domain containing protein. (Os08t0122800-02)
Parent gene strand	+
Alternative splicing	Os08g0122800_circ_g.1 Os08g0122800_circ_g.2 Os08g0122800_circ_g.3 Os08g0122800_circ_g.4 Os08g0122800_circ_g.5
Support reads	1
Tissues	root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os08t0122800-02:3 Os08t0122800-01:3

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							ATTCTTTCTCGATCTGTTTGTTTTACAGAGTACCACAAGTTGTGGCTTATCGGCAATGAATGAG
ATCCTATCTGGAGCCGTATAGGTGATGATTTATCAGtccacggcgaagctggggatttaactgg
cattcgtagatttcttggatttgggattggtttgcagcctgattcagactatatggacattgga
gggtgaag

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							TCCACGGCGAAGCTGGGGATTTAACTGGCATTCGTAGATTTCTTGGATTTGGGATTGGTTTGCA
GCCTGATTCAGACTATATGGACATTGGAGGGTGAAGCTTGGTGAGATGCTATTTATCTGTATTA
GGACGTGTGTATTTCCTGTGTGTTTGTTACTTTATATAGGATTTAGAATAAAAAGCGGGCAGTT
TTATGTGCAGGGGTGCTTTTGGAGGCAGATACGGTCTTCATCCACCCGACGGTAGATCCGAGCA
TGTGCATTTGTGGCGGTGCGAGGCAGCAGGCAGCGGCCAGTAGCCCGAGAACCCCGACCTCGAT
GCCCTAATGGGCGTCACGCCATATGTGACGGAGATACGCGACGAATTGGGGGTGAGCCAGGGAG
ACTGCGCGAACCATGATCTTGCGAGTTGCGAGCGCTGGGCCTGGCCACCGTTTTCAGGCCGTTG
GGCAAGCTAGGAGGCAAGACCTTGGAGACGGGAAGCTGATCTACTTCTCCAGTCTCCAGTTATG
TCTTGCAATTCGTAACTCCCTTCTTGGCTGCGGCCTACAGCCCTACAGCGAGTGGTATGACTTT
ATTCTTTCTAGATTTCTAGCATCTGATCTATTTGTCGATTAAGGGGATTTAACATATGTTAATT
GATTTACTAGCAGTTCAAGTGACACCCCCACCCCAAAATAACTAGAGCACGAATCAATCAAAGA
GCCTTCGATTATTACTTTATCCTAAAGAGATATTTGCTGATCAAACATAACAAATACAATTTGA
GAACTATGCAATTATGCTTCTAAAATTAGAGATGAAGTGAGGAGGGCATATTTGTTGAATGAAC
CAAATAAAACAGCTGAGTAATTATTTTTTCCATTTCATCATGTGCACATCACATTCGACATGTG
TAAGGGCATATGCTTCATTTTTGTTTTACTGATTTGAACTTAGGGTTCGAGCCCATCCTCCATT
CTCAACCTGGATTTGCCACTCATCAAGCCTCAAGGAAATTGGTGGAGGTTGGCCAACGTTTACC
TTCTACTGCAGAAGCTTGGTCATCGACTGCGTGCCTTGGTGCTGTCTTGCCATAGCTGCGGCTG
CTTGCCTTGATCTGTTCACTTCTTAGTTTGCTAATTTCAAACGCGAAATTGGTTATTAGTGGTT
CCGTTCTAATAGCTAAATATTAGAGATTGATTTCACCGAGTCTACAGCTTGCCATATTCATCTA
TTATATTATTAAAACAGCTTTGAAAGGAGGCACCACATTCGTTGTGGGGGCTAAAAATTTCCAG
TCTATGTAGGAATACAATAAAAAAAATGGCTGAAATTCGGAATTAGAAATAAGCAATATTGAAA
GAAGAGTCCATATAAGAACCTAATACGAGATTAATCAAAATTCGGAATAAAAATAAAATAAAAT
CCGAAATTAGAAAAAAAAAAAGAAGAGGTCCAAGTAGGAATACAATTTAAAAATAACTGAAATT
TGGAATTAAAAATAAGGAATATTGAAAGAAGAGTCCATACAAGAATCCAATACGAGATTAATTA
AAATTCAGAATAAAAAATAAAAAAAGAAAAAAGAAAAGAAAATAATAGTTCAAGTAGGAATACA
ATTTAAAATTAATTGGAATTCGGAATTAAATATAAGCAATATTGATATGAGAGTAGATATAAGA
ACCTAATAGTAGATTAATTAAAATTCAGAATAAAAATAAAATAAAATCTGAAATTAGGCAAATT
AAAAAGAGAGTGAAAGTAGGAAAATAATTTTGAAACAACTGAAATTGAAAATAAAAAATAAAAT
ATCAAAAGAACACAATACGAAAAATAAAATAAATACTGAAATTAGAAAAATAAAAATAAGATTT
CAACTAGGAATACAATTTAAAAATAATTAAAATTGGTGATAAAAAATAAAGACAACTGAAAAAT
AAAGACCATCTAAAACACATGACGAGATTAATTAAGTAACAGGCCTATACAGGAGCAGAGTGGT
GGCTGTTGATGGGACATCTGATAACTTGACGATTAAAAGGAAAAACAACGGGCAGGTCGTGAAG
CAATCGGTCAAGGCGGTTGGCGGGACTTTGACTTTTAGAAAGTAAAAAAATAAACCTTGGTGAT
AATCATATTTAATTTTTAAAATCTCAATTACAATAAAAACGAGAGGCAGCGGGCCTGTATAGGA
GTACAATGGCAGAGCCATTGATGGTTGGTGGGTCTTATAGAAAGTAAAAAATGAATTCCAATGA
TAGTTATGATCGATTTTTACAATCCCAGTGGCAATAAAGAGTATGCGGCGGACGGGTCGTAGAA
GAGTATAGTGGTAATGTTTGACGGGATTTCTAAAAATTATAAAACAGATGAAACCCAACGAGAC
AATAAACTCTAAAAACTATAAGATCTAATTTTTAAAGGTTCGGGCTTCTAAATAATAAAAAAAA
TAAACCCCAATGATAATCATGTTTGATTTTAAAAACTCAATGACAATAAAGAAGAGCGGCAGCG
AGCGAGCCATAGAGGAGTATGGTGACTAAGTCGCTGATATTTTGGTGGAACTTCTAGAAAGTAA
AAAAAATGAACCTAAACAATAATTATGTACGACTTCTAAAATAGCAATGACAATAAAGAGAAGA
TGCGGTGGATGGTCGTAGAGGAGTATAATGGCAGCGTTTGATGGGACTTCTAGAAATTATAAAA
AAGAAGCCCAACATGACAATAAACCTATAGTTTTTAGATCCAATTTTTAAAGGTTCCAAGGAGA
ATGAATAGAAACAATGGTAAATCGAGCAAGCAAATAATAAAGAATAATATGACAGATGTAAGGG
TAGCAACAGGTGTGACTTTTAAAAACCACTTCCTCCGTTTCATATTATAAGACTTTCTAGCATT
GCCCACATTTATATAGATTTTAATGAATCTAGACACACATTCATATATGTCTAGATTCATTAAC
ATACATATGAATGTAGGCAATGCTAGAAAGTCTTATAACCTGAAATGGAGGTAGTATAAAATTA
GAAACACGAGAATGATAAGGTTTGATCTTTCAAAATCTTAAGACAACGAGATAACTATTTAATA
AAATTTAAGTAAAATCATATTAAAAACATATAAGTTTATATGGGTGCTAGCCGCGCAATTGCGC
GGGCCACCCAGCTAGTTTATTTTAAATCCTTAAATTTCATTCTTACAAATGATTTGGCGATGAA
TTTTTTTCTTGTGTTCTTAGCAATGAGAAAAGAACAATGAGCCATGGGTCCTGAATCTTGCCAT
ACATGGACCAGTATGGCAGTACATGTGCTTCCTTATATACAATACAAGAACCAGAATGTAGAAT
CATACTTGTGCGCACCTTTAATTTTGTAGGATAATTGTATGGATGAAGCAATTAAAGTTATAAG
TTTTTTGAAGAGTTCAGAGTCCCTCATAGAGCTTGCAATCCAACATCACTTTATACCTGGATTT
AGGGTGCACATTTTTACAGGCAAGTGATTAGGGTGTTGCCCTCGGTTTAGTTTTCAGACTGTCA
TTATATTCACTAGCCATCAACCCGTGCGTCGCACGGACTATTTTTTTGATAAACATCATAAAGA
TTAAATTACATTGGCTTAGATTAAAATAATAGTTAATAAGATTAACAACTTGCTAATCAATAGA
GAATACTTAATGGACAGTGATATGCAACTTCACGTCAATTAATTCTTACTAATGATTTACTTGG
CTTACCAGGTTCTGATATTTTACATGGATTCTTTCTCGATCTGTTTGTTTTACAGAGTACCACA
AGTTGTGGCTTATCGGCAATGAATGAGATCCTATCTGGAGCCGTATAGGTGATGATTTATCAG
						
					

			
		

Sequences
Splice junction sequence	ATTCTTTCTCGATCTGTTTGTTTTACAGAGTACCACAAGTTGTGGCTTATCGGCAATGAATGAG ATCCTATCTGGAGCCGTATAGGTGATGATTTATCAGtccacggcgaagctggggatttaactgg cattcgtagatttcttggatttgggattggtttgcagcctgattcagactatatggacattgga gggtgaag
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	TCCACGGCGAAGCTGGGGATTTAACTGGCATTCGTAGATTTCTTGGATTTGGGATTGGTTTGCA GCCTGATTCAGACTATATGGACATTGGAGGGTGAAGCTTGGTGAGATGCTATTTATCTGTATTA GGACGTGTGTATTTCCTGTGTGTTTGTTACTTTATATAGGATTTAGAATAAAAAGCGGGCAGTT TTATGTGCAGGGGTGCTTTTGGAGGCAGATACGGTCTTCATCCACCCGACGGTAGATCCGAGCA TGTGCATTTGTGGCGGTGCGAGGCAGCAGGCAGCGGCCAGTAGCCCGAGAACCCCGACCTCGAT GCCCTAATGGGCGTCACGCCATATGTGACGGAGATACGCGACGAATTGGGGGTGAGCCAGGGAG ACTGCGCGAACCATGATCTTGCGAGTTGCGAGCGCTGGGCCTGGCCACCGTTTTCAGGCCGTTG GGCAAGCTAGGAGGCAAGACCTTGGAGACGGGAAGCTGATCTACTTCTCCAGTCTCCAGTTATG TCTTGCAATTCGTAACTCCCTTCTTGGCTGCGGCCTACAGCCCTACAGCGAGTGGTATGACTTT ATTCTTTCTAGATTTCTAGCATCTGATCTATTTGTCGATTAAGGGGATTTAACATATGTTAATT GATTTACTAGCAGTTCAAGTGACACCCCCACCCCAAAATAACTAGAGCACGAATCAATCAAAGA GCCTTCGATTATTACTTTATCCTAAAGAGATATTTGCTGATCAAACATAACAAATACAATTTGA GAACTATGCAATTATGCTTCTAAAATTAGAGATGAAGTGAGGAGGGCATATTTGTTGAATGAAC CAAATAAAACAGCTGAGTAATTATTTTTTCCATTTCATCATGTGCACATCACATTCGACATGTG TAAGGGCATATGCTTCATTTTTGTTTTACTGATTTGAACTTAGGGTTCGAGCCCATCCTCCATT CTCAACCTGGATTTGCCACTCATCAAGCCTCAAGGAAATTGGTGGAGGTTGGCCAACGTTTACC TTCTACTGCAGAAGCTTGGTCATCGACTGCGTGCCTTGGTGCTGTCTTGCCATAGCTGCGGCTG CTTGCCTTGATCTGTTCACTTCTTAGTTTGCTAATTTCAAACGCGAAATTGGTTATTAGTGGTT CCGTTCTAATAGCTAAATATTAGAGATTGATTTCACCGAGTCTACAGCTTGCCATATTCATCTA TTATATTATTAAAACAGCTTTGAAAGGAGGCACCACATTCGTTGTGGGGGCTAAAAATTTCCAG TCTATGTAGGAATACAATAAAAAAAATGGCTGAAATTCGGAATTAGAAATAAGCAATATTGAAA GAAGAGTCCATATAAGAACCTAATACGAGATTAATCAAAATTCGGAATAAAAATAAAATAAAAT CCGAAATTAGAAAAAAAAAAAGAAGAGGTCCAAGTAGGAATACAATTTAAAAATAACTGAAATT TGGAATTAAAAATAAGGAATATTGAAAGAAGAGTCCATACAAGAATCCAATACGAGATTAATTA AAATTCAGAATAAAAAATAAAAAAAGAAAAAAGAAAAGAAAATAATAGTTCAAGTAGGAATACA ATTTAAAATTAATTGGAATTCGGAATTAAATATAAGCAATATTGATATGAGAGTAGATATAAGA ACCTAATAGTAGATTAATTAAAATTCAGAATAAAAATAAAATAAAATCTGAAATTAGGCAAATT AAAAAGAGAGTGAAAGTAGGAAAATAATTTTGAAACAACTGAAATTGAAAATAAAAAATAAAAT ATCAAAAGAACACAATACGAAAAATAAAATAAATACTGAAATTAGAAAAATAAAAATAAGATTT CAACTAGGAATACAATTTAAAAATAATTAAAATTGGTGATAAAAAATAAAGACAACTGAAAAAT AAAGACCATCTAAAACACATGACGAGATTAATTAAGTAACAGGCCTATACAGGAGCAGAGTGGT GGCTGTTGATGGGACATCTGATAACTTGACGATTAAAAGGAAAAACAACGGGCAGGTCGTGAAG CAATCGGTCAAGGCGGTTGGCGGGACTTTGACTTTTAGAAAGTAAAAAAATAAACCTTGGTGAT AATCATATTTAATTTTTAAAATCTCAATTACAATAAAAACGAGAGGCAGCGGGCCTGTATAGGA GTACAATGGCAGAGCCATTGATGGTTGGTGGGTCTTATAGAAAGTAAAAAATGAATTCCAATGA TAGTTATGATCGATTTTTACAATCCCAGTGGCAATAAAGAGTATGCGGCGGACGGGTCGTAGAA GAGTATAGTGGTAATGTTTGACGGGATTTCTAAAAATTATAAAACAGATGAAACCCAACGAGAC AATAAACTCTAAAAACTATAAGATCTAATTTTTAAAGGTTCGGGCTTCTAAATAATAAAAAAAA TAAACCCCAATGATAATCATGTTTGATTTTAAAAACTCAATGACAATAAAGAAGAGCGGCAGCG AGCGAGCCATAGAGGAGTATGGTGACTAAGTCGCTGATATTTTGGTGGAACTTCTAGAAAGTAA AAAAAATGAACCTAAACAATAATTATGTACGACTTCTAAAATAGCAATGACAATAAAGAGAAGA TGCGGTGGATGGTCGTAGAGGAGTATAATGGCAGCGTTTGATGGGACTTCTAGAAATTATAAAA AAGAAGCCCAACATGACAATAAACCTATAGTTTTTAGATCCAATTTTTAAAGGTTCCAAGGAGA ATGAATAGAAACAATGGTAAATCGAGCAAGCAAATAATAAAGAATAATATGACAGATGTAAGGG TAGCAACAGGTGTGACTTTTAAAAACCACTTCCTCCGTTTCATATTATAAGACTTTCTAGCATT GCCCACATTTATATAGATTTTAATGAATCTAGACACACATTCATATATGTCTAGATTCATTAAC ATACATATGAATGTAGGCAATGCTAGAAAGTCTTATAACCTGAAATGGAGGTAGTATAAAATTA GAAACACGAGAATGATAAGGTTTGATCTTTCAAAATCTTAAGACAACGAGATAACTATTTAATA AAATTTAAGTAAAATCATATTAAAAACATATAAGTTTATATGGGTGCTAGCCGCGCAATTGCGC GGGCCACCCAGCTAGTTTATTTTAAATCCTTAAATTTCATTCTTACAAATGATTTGGCGATGAA TTTTTTTCTTGTGTTCTTAGCAATGAGAAAAGAACAATGAGCCATGGGTCCTGAATCTTGCCAT ACATGGACCAGTATGGCAGTACATGTGCTTCCTTATATACAATACAAGAACCAGAATGTAGAAT CATACTTGTGCGCACCTTTAATTTTGTAGGATAATTGTATGGATGAAGCAATTAAAGTTATAAG TTTTTTGAAGAGTTCAGAGTCCCTCATAGAGCTTGCAATCCAACATCACTTTATACCTGGATTT AGGGTGCACATTTTTACAGGCAAGTGATTAGGGTGTTGCCCTCGGTTTAGTTTTCAGACTGTCA TTATATTCACTAGCCATCAACCCGTGCGTCGCACGGACTATTTTTTTGATAAACATCATAAAGA TTAAATTACATTGGCTTAGATTAAAATAATAGTTAATAAGATTAACAACTTGCTAATCAATAGA GAATACTTAATGGACAGTGATATGCAACTTCACGTCAATTAATTCTTACTAATGATTTACTTGG CTTACCAGGTTCTGATATTTTACATGGATTCTTTCTCGATCTGTTTGTTTTACAGAGTACCACA AGTTGTGGCTTATCGGCAATGAATGAGATCCTATCTGGAGCCGTATAGGTGATGATTTATCAG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.09308306

Conservation Information
Conserved circRNAs	NA
PMCS	0.09308306

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							1244415-1247959(-)
1244183-1244699(-)
						
						Potential amino acid sequence
						
							MHMLGSTVGWMKTVSASKSTPAHKTSFTLQCPYSLNQAANQSQIQEIYECQLNPQLRRGLINHH
LYGSR*(-)
MPVKSPASPWTDKSSPIRLQIGSHSLPISHNLWYSLAVGL*(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	1244415-1247959(-) 1244183-1244699(-)
Potential amino acid sequence	MHMLGSTVGWMKTVSASKSTPAHKTSFTLQCPYSLNQAANQSQIQEIYECQLNPQLRRGLINHH LYGSR(-) MPVKSPASPWTDKSSPIRLQIGSHSLPISHNLWYSLAVGL(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os08g0122800_circ_g.6

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