Detail information of AT2G27170_circ_g.6


General Information
CircRNA Name AT2G27170_circ_g.6
ID in PlantcircBase ath_circ_015152
Alias At_ciR4180
Organism Arabidpsis thaliana
Position chr2: 11611958-11612103  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method find_circ, CIRI-full
Parent gene AT2G27170
Parent gene annotation Structural maintenance of chromosomes protein 3
Parent gene strand -
Alternative splicing AT2G27170_circ_g.1 AT2G27170_circ_g.2 AT2G27170_circ_g.3 AT2G27170_circ_g.4 AT2G27170_circ_g.5
Support reads 4
Tissues leaf
Exon boundary   Yes-No
Splicing signals   CT-AC
Number of exons covered AT2G27170.1:1
AT2G27170.4:1
AT2G27170.3:1
AT2G27170.2:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACCTGTAATTTGCAGAGCGTCCAGTCTGCTTCAAGTCTCTGCTGCTCAGTAACAAGCTGTGTAA
TCTGCTGATcttatattcaatggctttatgtatagcatgtttctgcttattagcgttagctatc
tcttgcttaagttgctcc
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 146
Transcript exons: 11611958-11612103
CTTATATTCAATGGCTTTATGTATAGCATGTTTCTGCTTATTAGCGTTAGCTATCTCTTGCTTA
AGTTGCTCCACCTGTAATTTGCAGAGCGTCCAGTCTGCTTCAAGTCTCTGCTGCTCAGTAACAA
GCTGTGTAATCTGCTGAT

Genomic sequence CTTATATTCAATGGCTTTATGTATAGCATGTTTCTGCTTATTAGCGTTAGCTATCTCTTGCTTA
AGTTGCTCCACCTGTAATTTGCAGAGCGTCCAGTCTGCTTCAAGTCTCTGCTGCTCAGTAACAA
GCTGTGTAATCTGCTGAT
Conservation Information
Conserved circRNAs NA
PMCS 0.170090525
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015