Plant Circular RNA Database

Detail information of Os11g0429200_circ_g.1

			
						 General Information
					
						CircRNA Name
						Os11g0429200_circ_g.1
					
						ID in PlantcircBase
						osa_circ_009236
					
						Alias
						Os_ciR7023
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr11: 13753417-13757017  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							u-circRNA							
									
						Identification method
						find_circ
					
						Parent gene
						
							Os11g0429200						
					
						Parent gene annotation
						
							Hypothetical gene. (Os11t0429200-01);Hypothetical gene. (Os11t04
29200-02)
							
						Parent gene strand
						+
					
						Alternative splicing
						
							NA						
					
						Support reads
						2
					
						Tissues
						root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os11t0429200-01:1
Os11t0429200-02:3

General Information
CircRNA Name	Os11g0429200_circ_g.1
ID in PlantcircBase	osa_circ_009236
Alias	Os_ciR7023
Organism	Oryza sativa
Position	chr11: 13753417-13757017 JBrowse»
Reference genome	IRGSP-1.0.38
Type	u-circRNA
Identification method	find_circ
Parent gene	Os11g0429200
Parent gene annotation	Hypothetical gene. (Os11t0429200-01);Hypothetical gene. (Os11t04 29200-02)
Parent gene strand	+
Alternative splicing	NA
Support reads	2
Tissues	root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os11t0429200-01:1 Os11t0429200-02:3

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							AAAATTTGATGGAATACCAATGCCTGTTGCGGGGTAATTTGCCCTCAATCTGAGGTATTGCCAT
GAGTATTATCATTTTCTCCCTGTAAATTGCAACAAGcagaattagcatggatcaggcaaaaggg
ttgacgtgctccagtgtaagaattgcttgagactcggttgtcaagagcgctgctttgacgactt
cctcctcg

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 128
Transcript exons: 13753417-13753481,13756955-13757017
CAGAATTAGCATGGATCAGGCAAAAGGGTTGACGTGCTCCAGTGTAAGAATTGCTTGAGACTCG
GTTTGCCCTCAATCTGAGGTATTGCCATGAGTATTATCATTTTCTCCCTGTAAATTGCAACAAG
Transcript length: 395
Transcript exons: 13753417-13753569,13754255-13754392,13756914-13757017
CAGAATTAGCATGGATCAGGCAAAAGGGTTGACGTGCTCCAGTGTAAGAATTGCTTGAGACTCG
GTTGTCAAGAGCGCTGCTTTGACGACTTCCTCCTCGGCCTCCGCCTCAACTGCCACCGCCGCCA
CTGCCGCGTCGTCCGACAATATTTGGTTCATGGTAGCACATGGGTTTGGTAAATCTATCCCAAT
GAAAAATGGTGGTATTTGATCATTCCCTTCGTTCCTTTTCTATAGCTTTGGTTAACCTTCTGGG
TGAGGTGCACTACAATTCCTTGTATGACATTGAAGTCATAAAATTTGATGGAATACCAATGCCT
GTTGCGGGGTAATTTGCCCTCAATCTGAGGTATTGCCATGAGTATTATCATTTTCTCCCTGTAA
ATTGCAACAAG
						
					

						Genomic sequence
						
							CAGAATTAGCATGGATCAGGCAAAAGGGTTGACGTGCTCCAGTGTAAGAATTGCTTGAGACTCG
GTTGTCAAGAGCGCTGCTTTGACGACTTCCTCCTCGGCCTCCGCCTCAACTGCCACCGCCGCCA
CTGCCGCGTCGTCCGACAATATTTGGTAATGCACTTGAGGTGATCGACTGCTGATTATATCTCT
TTAAAGTGAAAGTACCTCTATTACTTTGTAAGCACAGTAAAACATCTCAATGATATGATCTGTT
TTTTTTGCAAGGTAAATAATTGCTCAAGCTACCTAATAATATTTACAGATAATGAAAATGATAT
TTAATTGGAACCAATCCTTTACTAATACGAACTGGTTGCACATACTTCTTTTTCTTCCAATGCC
AAAAAAAAAAAGAAGCGAAGTTCAGGATATTAATTGGCCTTTTTAGTCAATAGTCAGAAGTTGT
ATTGCCTTATATACAAGCTTAATGTTTTCACTGAATTACCTTTTCAGTATATAAACTGAATGTT
CTATTGGGTCATTCTAGGTATCGATTCATAATTATATGAGTCGTGTTTTCTTTGTTAAATCTGT
GCGCTGGTTATTGTTGCCATAAAGTTCCCTTTTCAAATGAATACTAGACATGTCACCTAAAAAT
ATCTTGTATGTACACAAATAAGGCCTCTCTGGTTTCCTGTAGATGCGTATATGCTGAACTTTTC
ATGTAAATGCTTATGCTGATTTTTTTAATACAAAAGTATATGTTGGTTTTACACTTGATAAGGT
ATATATGCTACCATGTTTGTACACACTGCAATTATTTCTCATATTTTTACCTCCAATCGTATGG
CACCAGGTTCATGGTAGCACATGGGTTTGGTAAATCTATCCCAATGAAAAATGGTGGTATTTGA
TCATTCCCTTCGTTCCTTTTCTATAGCTTTGGTTAACCTTCTGGGTGAGGTGCACTACAATTCC
TTGTATGACATTGAAGGTGAGTTCTTTTGCTTTTCTGTGATCTGGGAGTGAAGGAAAGGTTTCC
TACAATTCCTCGGTTTTTCCAATTTGCATGATTTCTTGTATAGCTGCTCATCTTCCTGTAACCT
GCAGTGAAGACTTATGTCCTTATCCCCCGGTCTTATAAATCCTGCAGAATTTGCACATTAGAGG
TGACCTTTTAATGGATTTTCTATTTTAAATATAATTTGCAGCAGACCGTAGTTGTCTGAAAATC
CTTAATTTTTCTCCTCTGTTTCTGTGAAACTGTAATTGAATTGCCTATATATGGAATGATAAAT
AGCTGATGATATGTTTTAGTCATCATTTTATTTTAAGTTCAGGCTAAACTAAATTCATGATCTA
TCTTTAGCTTTTCTATTGAATTTTCTAGCGCTTAAGCTAAAGAGTTAGTCACCAGTAACAAAAT
TTACTAATATCATGAAGACCAATGAATGTTTGGTGCGTGGTCGGAATCCACCAACCTTGAAACT
CCCTGCCATCCATATGTAGCTTTTTGAGATTTCATATATAGCTTCATAATGTAGGATGTTGTGA
AATAACTATATGACTTTCCATCAGAAGTTAGTACTTTTAGCTTGCTTTCATATTTGGTTTACTG
TCTGCATACTCAAATACACCTGAAACTAAAATGCATGTTTTCTTTTGCACATCAGTGCAATGTT
GTTTCCCTTGAGGTGATGATGATATGACCATGGGAACACTTTACTTCACAGCAGTTGGTGGCTG
TCCATCCATGGCAAATATTCTAGGAATAGATCATGTCTATTCAGATGCAACATTATTTGATCTG
CCTTCAAAACCTGAAAAGATTGCGATAGTAGGAAGAGGGTATATTAGTTGGAGTTCGCTGGCAT
TTACACCGGCTCAATAAGTGATGTTCGTTTTCAAACTGCATTGCCTGACCAAAAATATTATCAG
TGGGAACTAGGTTGTTCTCAGGTTTTTAATGGTTGTCACATGGATAGTTCTTTCTACTACTTTC
GCTATGTAGGTGTACATCTGTGGGAGTAATATATGTTCCATGTGTCTCTGCATCAACTAAAATA
CCTGATGGATGTACACATTTTTAAACAAGTTGAGATTGATCTGAGTGGATGGAGTTATAAGTAT
TAGAAAAAAAAAGGATGGTTCGAACGGAACACAACAACCGTGGTTGATTAAACTGACAAAATAG
CATTTGAATTGATATCATTAGTCTTTTTCCTCCCCAAGAGAGAAAACAACACAAAAGATCATTA
GCCTTTCTAGCTCTGCTTTAGATGCAACTAAGCTCAGCACTTGCGTAGAATCAAAGTTCTCTGA
AACAAGGGATACATCTGAATGTCTCATCTAAATCATCTGAACAAATGCATTTGATTTGGTATTC
TTTGTCTGAATTAGTGAGTCATATTTGTGCTGCAGATGCACTGCCTTCCTGTAATTTATCTCCA
TTATCTTCATTTGCGGTTACTCTCTTTTGGTCGTCTGTCGGAAATTCAGAATGAAAGTTGAATG
GTTGGGCACTTTCGGTTAGACAAGTGTTGCCTGCTGTTTGGAAGTAAATCATCATCATCTGAGC
CTGAGCTGCACTTCCCTGGCATTTCTTGTCCGGGACAACTGTGACACTATTTTTCTTAAATTGT
CAATCATGACTTTGCACAAATTTCATGATTTTTCACCCATCATCATAGTGCATTGTCAATTTTG
TTGTCCTTCCATGAAAAGGATTTGGAATTGAATTCCTTGTTTGTATCGTATTAAACGACAACTT
GGTTTCTGATAGCAATGCAGTGAAAATAAGTAGTATAATGCAACAATTTTGTCTGTATGTGTTA
GCAAAATCCAAGTCAGCCTTTACCATGAAATATGAATCACAAGTCAAGCATATGTGCTTAATCA
CCCGTTTTAGCACCTGCATGATATGAATCATCTGGAGTTATCCCTGGGTAGAAAACGTGCAGGC
TTATCATATTGTTCGGCGAGTTGTTGATGGAAGCTTTTTCAAAGTTGGTCCCTTGACTCTACAT
GTCTGTAAATGAGTTTTATACCAGGGGACCGGGAGCACATTTCTTACCATTTCCTTCATGGTTT
ACTCCCTTTGCCATGGATATCTTATGATTTTCACGAAACATAAAAGCACCTCATGTTAGGAATC
CTCCCCATTTCAGCAGCAAATGCATTGCTTCAAAACAATGAATCCAGTTCCATTTTATTTTTTT
AATAGCAAATCCCTGATCATACATTTTGCATCTTTAGTGTATCGTAGATCAGTTGATAACTACG
GATCATTCATACATGATTCTGGCCGCTCCATAATTTGCTTATAATTTTATTCTCAAATCAAATG
TAAAGATGTTCATAATTACTGCATAATTTCTTCTGCATGATTCTTTGTTCCTGCAAATGTTGTT
CTTCTCCTCCCTCTACTTGGCCTCAGATCAAATGATTTGAGGGGCAGAAAACGAAACATGATGG
TATTCAGTATCAAAGCTAAGTTTTTTTTTATTCTTTTGCAGTCATAAAATTTGATGGAATACCA
ATGCCTGTTGCGGGGTAATTTGCCCTCAATCTGAGGTATTGCCATGAGTATTATCATTTTCTCC
CTGTAAATTGCAACAAG
						
					

			
		

Sequences
Splice junction sequence	AAAATTTGATGGAATACCAATGCCTGTTGCGGGGTAATTTGCCCTCAATCTGAGGTATTGCCAT GAGTATTATCATTTTCTCCCTGTAAATTGCAACAAGcagaattagcatggatcaggcaaaaggg ttgacgtgctccagtgtaagaattgcttgagactcggttgtcaagagcgctgctttgacgactt cctcctcg
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 128 Transcript exons: 13753417-13753481,13756955-13757017 CAGAATTAGCATGGATCAGGCAAAAGGGTTGACGTGCTCCAGTGTAAGAATTGCTTGAGACTCG GTTTGCCCTCAATCTGAGGTATTGCCATGAGTATTATCATTTTCTCCCTGTAAATTGCAACAAG Transcript length: 395 Transcript exons: 13753417-13753569,13754255-13754392,13756914-13757017 CAGAATTAGCATGGATCAGGCAAAAGGGTTGACGTGCTCCAGTGTAAGAATTGCTTGAGACTCG GTTGTCAAGAGCGCTGCTTTGACGACTTCCTCCTCGGCCTCCGCCTCAACTGCCACCGCCGCCA CTGCCGCGTCGTCCGACAATATTTGGTTCATGGTAGCACATGGGTTTGGTAAATCTATCCCAAT GAAAAATGGTGGTATTTGATCATTCCCTTCGTTCCTTTTCTATAGCTTTGGTTAACCTTCTGGG TGAGGTGCACTACAATTCCTTGTATGACATTGAAGTCATAAAATTTGATGGAATACCAATGCCT GTTGCGGGGTAATTTGCCCTCAATCTGAGGTATTGCCATGAGTATTATCATTTTCTCCCTGTAA ATTGCAACAAG
Genomic sequence	CAGAATTAGCATGGATCAGGCAAAAGGGTTGACGTGCTCCAGTGTAAGAATTGCTTGAGACTCG GTTGTCAAGAGCGCTGCTTTGACGACTTCCTCCTCGGCCTCCGCCTCAACTGCCACCGCCGCCA CTGCCGCGTCGTCCGACAATATTTGGTAATGCACTTGAGGTGATCGACTGCTGATTATATCTCT TTAAAGTGAAAGTACCTCTATTACTTTGTAAGCACAGTAAAACATCTCAATGATATGATCTGTT TTTTTTGCAAGGTAAATAATTGCTCAAGCTACCTAATAATATTTACAGATAATGAAAATGATAT TTAATTGGAACCAATCCTTTACTAATACGAACTGGTTGCACATACTTCTTTTTCTTCCAATGCC AAAAAAAAAAAGAAGCGAAGTTCAGGATATTAATTGGCCTTTTTAGTCAATAGTCAGAAGTTGT ATTGCCTTATATACAAGCTTAATGTTTTCACTGAATTACCTTTTCAGTATATAAACTGAATGTT CTATTGGGTCATTCTAGGTATCGATTCATAATTATATGAGTCGTGTTTTCTTTGTTAAATCTGT GCGCTGGTTATTGTTGCCATAAAGTTCCCTTTTCAAATGAATACTAGACATGTCACCTAAAAAT ATCTTGTATGTACACAAATAAGGCCTCTCTGGTTTCCTGTAGATGCGTATATGCTGAACTTTTC ATGTAAATGCTTATGCTGATTTTTTTAATACAAAAGTATATGTTGGTTTTACACTTGATAAGGT ATATATGCTACCATGTTTGTACACACTGCAATTATTTCTCATATTTTTACCTCCAATCGTATGG CACCAGGTTCATGGTAGCACATGGGTTTGGTAAATCTATCCCAATGAAAAATGGTGGTATTTGA TCATTCCCTTCGTTCCTTTTCTATAGCTTTGGTTAACCTTCTGGGTGAGGTGCACTACAATTCC TTGTATGACATTGAAGGTGAGTTCTTTTGCTTTTCTGTGATCTGGGAGTGAAGGAAAGGTTTCC TACAATTCCTCGGTTTTTCCAATTTGCATGATTTCTTGTATAGCTGCTCATCTTCCTGTAACCT GCAGTGAAGACTTATGTCCTTATCCCCCGGTCTTATAAATCCTGCAGAATTTGCACATTAGAGG TGACCTTTTAATGGATTTTCTATTTTAAATATAATTTGCAGCAGACCGTAGTTGTCTGAAAATC CTTAATTTTTCTCCTCTGTTTCTGTGAAACTGTAATTGAATTGCCTATATATGGAATGATAAAT AGCTGATGATATGTTTTAGTCATCATTTTATTTTAAGTTCAGGCTAAACTAAATTCATGATCTA TCTTTAGCTTTTCTATTGAATTTTCTAGCGCTTAAGCTAAAGAGTTAGTCACCAGTAACAAAAT TTACTAATATCATGAAGACCAATGAATGTTTGGTGCGTGGTCGGAATCCACCAACCTTGAAACT CCCTGCCATCCATATGTAGCTTTTTGAGATTTCATATATAGCTTCATAATGTAGGATGTTGTGA AATAACTATATGACTTTCCATCAGAAGTTAGTACTTTTAGCTTGCTTTCATATTTGGTTTACTG TCTGCATACTCAAATACACCTGAAACTAAAATGCATGTTTTCTTTTGCACATCAGTGCAATGTT GTTTCCCTTGAGGTGATGATGATATGACCATGGGAACACTTTACTTCACAGCAGTTGGTGGCTG TCCATCCATGGCAAATATTCTAGGAATAGATCATGTCTATTCAGATGCAACATTATTTGATCTG CCTTCAAAACCTGAAAAGATTGCGATAGTAGGAAGAGGGTATATTAGTTGGAGTTCGCTGGCAT TTACACCGGCTCAATAAGTGATGTTCGTTTTCAAACTGCATTGCCTGACCAAAAATATTATCAG TGGGAACTAGGTTGTTCTCAGGTTTTTAATGGTTGTCACATGGATAGTTCTTTCTACTACTTTC GCTATGTAGGTGTACATCTGTGGGAGTAATATATGTTCCATGTGTCTCTGCATCAACTAAAATA CCTGATGGATGTACACATTTTTAAACAAGTTGAGATTGATCTGAGTGGATGGAGTTATAAGTAT TAGAAAAAAAAAGGATGGTTCGAACGGAACACAACAACCGTGGTTGATTAAACTGACAAAATAG CATTTGAATTGATATCATTAGTCTTTTTCCTCCCCAAGAGAGAAAACAACACAAAAGATCATTA GCCTTTCTAGCTCTGCTTTAGATGCAACTAAGCTCAGCACTTGCGTAGAATCAAAGTTCTCTGA AACAAGGGATACATCTGAATGTCTCATCTAAATCATCTGAACAAATGCATTTGATTTGGTATTC TTTGTCTGAATTAGTGAGTCATATTTGTGCTGCAGATGCACTGCCTTCCTGTAATTTATCTCCA TTATCTTCATTTGCGGTTACTCTCTTTTGGTCGTCTGTCGGAAATTCAGAATGAAAGTTGAATG GTTGGGCACTTTCGGTTAGACAAGTGTTGCCTGCTGTTTGGAAGTAAATCATCATCATCTGAGC CTGAGCTGCACTTCCCTGGCATTTCTTGTCCGGGACAACTGTGACACTATTTTTCTTAAATTGT CAATCATGACTTTGCACAAATTTCATGATTTTTCACCCATCATCATAGTGCATTGTCAATTTTG TTGTCCTTCCATGAAAAGGATTTGGAATTGAATTCCTTGTTTGTATCGTATTAAACGACAACTT GGTTTCTGATAGCAATGCAGTGAAAATAAGTAGTATAATGCAACAATTTTGTCTGTATGTGTTA GCAAAATCCAAGTCAGCCTTTACCATGAAATATGAATCACAAGTCAAGCATATGTGCTTAATCA CCCGTTTTAGCACCTGCATGATATGAATCATCTGGAGTTATCCCTGGGTAGAAAACGTGCAGGC TTATCATATTGTTCGGCGAGTTGTTGATGGAAGCTTTTTCAAAGTTGGTCCCTTGACTCTACAT GTCTGTAAATGAGTTTTATACCAGGGGACCGGGAGCACATTTCTTACCATTTCCTTCATGGTTT ACTCCCTTTGCCATGGATATCTTATGATTTTCACGAAACATAAAAGCACCTCATGTTAGGAATC CTCCCCATTTCAGCAGCAAATGCATTGCTTCAAAACAATGAATCCAGTTCCATTTTATTTTTTT AATAGCAAATCCCTGATCATACATTTTGCATCTTTAGTGTATCGTAGATCAGTTGATAACTACG GATCATTCATACATGATTCTGGCCGCTCCATAATTTGCTTATAATTTTATTCTCAAATCAAATG TAAAGATGTTCATAATTACTGCATAATTTCTTCTGCATGATTCTTTGTTCCTGCAAATGTTGTT CTTCTCCTCCCTCTACTTGGCCTCAGATCAAATGATTTGAGGGGCAGAAAACGAAACATGATGG TATTCAGTATCAAAGCTAAGTTTTTTTTTATTCTTTTGCAGTCATAAAATTTGATGGAATACCA ATGCCTGTTGCGGGGTAATTTGCCCTCAATCTGAGGTATTGCCATGAGTATTATCATTTTCTCC CTGTAAATTGCAACAAG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.196532169

Conservation Information
Conserved circRNAs	NA
PMCS	0.196532169

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							13753430-13754286(-)
						
						Potential amino acid sequence
						
							MLILLVAIYREKMIILMAIPQIEGKLPRNRHWYSIKFYDFNVIQGIVVHLTQKVNQSYRKGTKG
MIKYHHFSLG*(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	13753430-13754286(-)
Potential amino acid sequence	MLILLVAIYREKMIILMAIPQIEGKLPRNRHWYSIKFYDFNVIQGIVVHLTQKVNQSYRKGTKG MIKYHHFSLG*(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Ye et al., 2015

circRNA

Detail information of Os11g0429200_circ_g.1

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