Detail information of AT2G03620_circ_g.1


General Information
CircRNA Name AT2G03620_circ_g.1
ID in PlantcircBase ath_circ_012692
Alias 2:1102967-1103430
Organism Arabidpsis thaliana
Position chr2: 1102967-1103430  JBrowse»
Reference genome TAIR10.38
Type   u-circRNA
Identification method find_circ; CIRI2
Parent gene AT2G03620
Parent gene annotation Magnesium transporter MRS2-5
Parent gene strand -
Alternative splicing NA
Support reads 3
Tissues root
Exon boundary   Yes-No
Splicing signals   CT-AC
Number of exons covered AT2G03620.2:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GAAACTGTAATTATTAACTCAGAATCACATTCAAGATTATCGTCGTCTTCGTCATCTTCGTCTT
CTTCTTCTTCGTATTTATCGCCACCGAAAGATCTACctttcgttctgtttatctccagacaacg
aaccaaaccctagatccccttttcctcatcttaatttttttctttcttccttcattctctctag
caagaaaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTTCGTTCTGTTTATCTCCAGACAACGAACCAAACCCTAGATCCCCTTTTCCTCATCTTAATT
TTTTTCTTTCTTCCTTCATTCTCTCTAGCAAGAAAAAGAAACGAAATTTCACAACTTCACTCAT
CAGGCTCTGGTCAAATCGATTTCAAGGTATGTTTTTTGATGTTATATTTGTTCGAATAGCCCGA
GAAATTGCTTAAAATGATGCATTGATGATTGCTTCTCCAGGTGTTTATGGAGTCTAAACATGAA
GAACATGTGTTATCCAAACAAAAACATGATCAAGATGTAAACAAAAAAGGTTCATTAGACGACG
AAAATGGAGATGTTGAGCATAAAACGATACCTTTACAAGAAACAGAAACTGTAATTATTAACTC
AGAATCACATTCAAGATTATCGTCGTCTTCGTCATCTTCGTCTTCTTCTTCTTCGTATTTATCG
CCACCGAAAGATCTAC
Conservation Information
Conserved circRNAs NA
PMCS 0.207265947
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Philips et al., 2020