Detail information of BGIOSGA023755_circ_g.2


General Information
CircRNA Name BGIOSGA023755_circ_g.2
ID in PlantcircBase osi_circ_017452
Alias Chr07:28168954_28173307(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr7: 26097982-26102337  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRCexplorer2
Parent gene BGIOSGA023755
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA023756_circ_ag.1 BGIOSGA023755_circ_igg.1 BGIOSGA023755_circ_igg.2 BGIOSGA023755_circ_igg.3 BGIOSGA023755_circ_g.1 BGIOSGA023755_circ_g.3 BGIOSGA023755_circ_g.4 BGIOSGA023755_circ_g.5 BGIOSGA023755_circ_g.6
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   CT-TA
Number of exons covered BGIOSGA023755-TA:8
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TAATAGTACTCCTTGGCAGGAATGGTGTCCTTTTCTTCGCATAAAAGTTCATGCCAACAAAGTT
CCCATCCAAATCAATAAGAGGCCCTCCAACCCCAGCccttactgattctacaagtggagacctt
aagttctttgcagtcaagtttgcttggtttgtcagtcaatatcccacttgtggccattaatttg
gctgactt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTTACTGATTCTACAAGTGGAGACCTTAAGTTCTTTGCAGTCAAGTTTGCTTGGTTTGTCAGT
CAATATCCCACTTGTGGCCATTAATTTGGCTGACTTGAAGACGCGTCCTACAGATAATACCTCC
TTACGCTCAATTAGCCCTGGATCATGAAATTCTTCCGTACGAAGACAACGAAAACCTTTGATGC
TGACAATAGCAACATTGTAATGCAGATGATAATGTTGCAATGTCCCTACAGTTTGTTGTTTGTT
TGGAAGGTGTACAACAATCTGCAGAAGTAATGTGAGGATTTACCGGTATCTCAAATGAATAAGC
TCAAGGAGGACAATACAATACCAACCTTCAAGTTATCATTAATCCTGTTTTCATCATCAGAAAT
CCTAACCAAACTTGCTGAAGTCAGAATCCTTGTGTTGGATTCATCGCAGCCTATAAATATTCCT
GTGCAAGCAAAAATCCGTTCTTCGCCTACAAGATCATAATGAATCATAGTTAGTGATATGATAT
AAAAAAGAAATGAAAATGCAATGAGATTATAACAATGCGATTACCATTGAATGAAGCAAGAGAG
ACAACAACACGAGACATGTTTGAAGCAACTTTTTTGGTGAGTTTACTCCAGATATCATCAGCAA
ATTCATTTTCAAAAGTATTAACCAAACGCATGCCTCCTGGTTAAAAAAAAGTAGTACCACATAT
GAGAGTGCTGTAATACAACTGTCAAAATGTGCAATACAAGGGAGTAATCAACAACAAACTCACC
GTCAAGGACAGCTGGCAAAGGATAACCTTGGGACGTTAGTTCCTTGATTAAAAATTTCCCAAAT
TCTGGTAAACAAACTGAAATGATTAATCATCATGTGTTAACAATGACAGCAAAATTAGAAACAA
TGACTCACCATCACCATCAGCAACTGGCAAGAAAGGGGAGGCCGTCTCCATAAAAAATGGATCA
TTCTCAATTGGGTTTTCTAGAGAAAAAAAGGTGTAGGCGATTAATGACCATGTGTTAGTAATGA
TCAATAATTAGTGTTGAAACATGATGACAACTTTTGCATGATATGTCATATTAGTGACCTAGCC
TGATTCACCTTCTGAATCACTAGAAGAAGACGACTCCTGCTCATTCTCAGGTTTCCTACTGGAG
TTACCTAAAATGGAAAAGATGAGAGGAATGAGCAGATTGGACAAACTGAAATCCTTGGGTAAAG
GACACAATACTAGATTTTCATGCAGAACATCCATGTATGTTAGTACAGACAGGTAAAAGCATAA
AATCAATCTTGCACAAATGCTGACAAACCTACAAATGATGAATAGTTTAAAATAAATGATAATG
ATCTGCTTGACAGGCGACATCACAGTTTAGTAGTCTTTAGGAGTTTTTGCACACTTACGTAACT
CAAAAGAGTCCGAACATCCTTCCAAGCCTTCCAAATAGGACTTGGAGGTTGCAGGAGATTCTTG
TATCTCATTTGTGCTCCTTCCAGTTGTGCTATCAAGTTTCTTAAGCTCACCCCTGCAGTATAAC
ACAGTAAATTCATCAAGAGTAGTTACCAAAGAAAAGGTGGAATGGATAAGGACAATTGGCATTC
TATATTCCTTTTGTAGCGAATGATATGGTCAGTGATGTCATTCAAAGATTCATAACTAAGGGTA
AAAGATTTATCAACCACCGTATGATAACAGATAATACAGTTAGCATGGTTAAAAGAGCTAACAA
TCCTGTGCAGGGTAGGTTGTGGGTTAGTCTCCCCACTTATGCAACCTGAGGTTTACTTTTTGGA
AAACTGCATATTGGAGTAACATTTCAAGAAAAAAATAAAGTGGTGAGGATCCCTGACATCCCTG
AAAGCACGCAGCCATGGACATATAGCCTCTGCAAGAGCAGTTGAGCGCTATGTGCCTATGTTTC
TCTTCCCTCTGAATCCATTATTCAAATTAGGCATATCTTTTTGTTTTGGCCTCAATATCTTTTA
CCAGGCACCACAAACAATAACCAGTGACCAGCAAATAACAGTCAAATTGGACCAAAATGTTTTC
TCCAAGATCTATGCATGAATGCTTATTTTCTCGAAAACACAGGAGAACTGCGCTCATTACAAAT
GAAATATATAGACAACGGAAGGATCCAAAGGACCCTCCCATAACACCACCCCCCCCCTCCCCAA
AATAAATAAATAAATAAATAAATGTGGTACACGACTAGAACACCCCGCGACGACTAGCTAGCCA
TCCAAGGCGAGAGACCTTATGCATGAATGTGAAAGAGCTATGCAAACAATAGGAGCAATACAAA
AAAAAAATGTGAGTATTAACTATCTCATAGAAACAGACAAATTTGAGAAAATATAATATTAAAC
CTGCAAGGAAACCTTGATTATTATTTGCTTCAACATGGTCACAGTAGTCCAAATCTAGTACAAG
GCAACTGTAATACATGCTTGACAGTACAGGTGGTCTAGATGGAAATGGTACTTATTTAGCTAGA
GATGTGAGAAGCAACCAAATTGTTGTCAAGGATGCTCTCTGATGCATATAAATTAACAAACATT
ACAGCCAGTGAGCTCGGATATTTGGGTAGATCAAAAGTGTTTTTGCCACTCAAAAAAATGATGT
GCCTTATCTATATTTATCACAAATACGTGTTGAATTGGAATTTGGACAACTGTAGTCTTATCAA
AATATAACTTGACCACTAATTTCTATTGTAATTGTAATATATTTTAATATCCAATAAATTTGTA
ATAGTATGTCATGGCCAAGCAACGGCCGAAGGTTATATGGGTGGAAGGACGGAGGCTGCGGCCT
CCGCTGTCGTGGTTGGTGAGGCTCGGTGGTGGTTCTATATAGAAGAAAGAGAATAGGAGAACGG
CAGACAAAGGAGATTGGAGATTTATTATTTTCTTCGTTGCCATCACAGTTCGATTACATCTCCT
TATATAGCCTTAATTCTCTAACAAACTCAATCTAACTTGATCCTGATTTAACTCAATCTTTAAC
TGACCTTAACCTGATTTATCTCTAAGATTACATTAACAAAACTCATCTGTAAAATAAAAGTACT
TTTTGACACGGATCTGTGCATATGATTTTTAACTATATCCACCTAAATACTTAAAAATTATTGA
CACTTGAGTTTCAAAAGTTTGACCAGAGATATATCCATGATCCTTTGAGGCTCTGAGCTACTGC
TCTTTACTTCATTTCATACTAGCTAAATGCCCGTGCTTTGCTACGGATAAAAGGAAAAGATATC
ATAATATTGCCTAAAATAAATAAAAGCATTTTTTTCAACAATATGTTACCCACCTTTTCACTAC
AAGGAGTATTCACCTCAATTTAATTTTATATATGGCTATCCATTTAGATCTACTTGTTATGTAA
TATATTAAGAAGTTCAAGGGGTAATGTGTAAAAACTATAATTGGAGTAGGTGGGGTGGCATATT
CACCGCCACCACCATTGGAGTCTTTCTAAAGGAGTATAGATGTTTACTGATCGGTGTTCGGTTG
CATAGAATTTCTGCCTTGAACTACTAGTTCACTGTTAGCACAAAGGATCTATGATCATCCAGAA
GATCTTTTGGATAAACTAACTGCTCTGTTTCCATCTAGCACAAAATATCGAACCAAAAGCTATT
CTGGGACTAACCACTTTGCTAGTACTTGTACTCATTTTTCTAAGTAGCCCAATAACTGGGTGCA
TTCTTCACAGAAAAGTCAACTTATAGTCTTATAGAATTTTACTAGCTTTTCTTGTGTAACAAAG
GCTCTATATGATTTATAGGGAACTTATAACAAAGTCAACTTATAGGAAAGTCAGCATTTAATCA
TTATGATTTACCTCTCAGGAACATGCATGTCCTTTTTTTTACAGAATTAATGAGACTCTGACAG
TACGGGCTCAGCCAGTTGTTTATAAATGTACTCTGTATGACTGTGCCAACGTTTAAAACATGAG
GCTTATAGATCAGTATGGCCATTTTAAAATTTATAAATGTACTCTGTGTGGCTGTGCCAACATT
TAAAACATGAGGCTTATAGTTCAGTCTGACCATTTTAAAAGTTAACACTAAGTGCAGTCCTAAT
TTAACTTTTCTTTTACAAAAAAGTATTCCATGTGCGCTGCATACCAAATGTCTAAGTATAAAAT
AGCGATGTATAGGAAAGTAGAGGCTAGCGAAACGAGAAACCATATAGCTGACAGTAAAAACTTA
CCGGTATGTCTTGAAATTAGCCATGCATTCGGTAATAGTACTCCTTGGCAGGAATGGTGTCCTT
TTCTTCGCATAAAAGTTCATGCCAACAAAGTTCCCATCCAAATCAATAAGAGGCCCTCCAACCC
CAGC
Conservation Information
Conserved circRNAs osa_circ_035200
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs osa-miR1854-3p
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021