Detail information of Zm00001d000259_circ_ag.1


General Information
CircRNA Name Zm00001d000259_circ_ag.1
ID in PlantcircBase zma_circ_010399
Alias Zm_ctg_circ00005
Organism Zea mays
Position chrB73V4_ctg134: 4172-49919  JBrowse»
Reference genome AGPv4.38
Type   ag-circRNA
Identification method CIRI2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Zm00001d000270_circ_igg.1 Zm00001d000259_circ_igg.1 Zm00001d000259_circ_igg.2 Zm00001d000260_circ_igg.1 Zm00001d000260_circ_g.1 Zm00001d000260_circ_g.2 Zm00001d000270_circ_g.1
Support reads NA
Tissues leaf, endosperm
Exon boundary   NA-NA
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AATCCATGAAGTAAGACATTGATTTTGCAACAAGGTCAATTATGTTCATTGCATAAAAAGTTCC
CTTGAAAAGCATTGGCGCACGTGTAAACGAGTTGCTggattagcaatccgccgctttagtccac
tcagccatctctccccgttccaaatcgaaaggttttcatgatatggcagaggcaagaaataacg
attgtcaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.
Conservation Information
Conserved circRNAs NA
PMCS 0.202879601
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Han et al., 2020