Detail information of BGIOSGA003191_circ_igg.1


General Information
CircRNA Name BGIOSGA003191_circ_igg.1
ID in PlantcircBase osi_circ_001956
Alias 1:9617505|9622139
Organism Oryza sativa ssp. indica
Position chr1: 9617505-9622139  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   igg-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing NA
Support reads NA
Tissues leaf
Exon boundary   NA-NA
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTTTGGCGCTGTCTATGTTTGCTGATTTTGGTCGCGGCACGCTCGCGCGCAGGTGTTCTACTTC
GATATTGGGGAGAACAAGAGAGGCCGCTTCCTCAAGgtatcagaggcatctgtcaacagaaacc
gtagtacaatcattgttccggctggtagttctggtgaagaaggttgggaagcattcaggaatgt
attgttgg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTATCAGAGGCATCTGTCAACAGAAACCGTAGTACAATCATTGTTCCGGCTGGTAGTTCTGGTG
AAGAAGGTTGGGAAGCATTCAGGAATGTATTGTTGGAAATAAACAATGAGGCTTCCCGACTTTA
TGTTCTACCAAACCATCCTAATCAGGTACAAGAAACTATACCTTTTTTTGACATATTCATGAAG
TCTCAGATGACATCATCATTAAATTCTTGCCATTGTATTTGGCAGCAACACTTGGAACCTCCAG
AGCGCCTTCCTGGACTTTCTGATGATGTTGGTGCTGGATTTATAGCTGGACATGGAAGTCAATC
TGCTTCTGGACCAGAGGTAGATGTTGAACGCCTGGTTGATTTGCCTCCTCAGGAAGAAATTAGT
GGCATGGGCATGTCTAAGGTCATAAGGGCAGATCAAAAGAGGTTCTTCTTTGACCTTGGAAGCA
ACAACAGGGGTCATTACCTGAGGATTTCTGAGGTATCCTACTATTTGTCCGTAACTTCGTGCTA
TCTCAAACCTGTAAGAACGCAAGGGCTTTGTTCTTACGACCTGTCAAACTGCAGGTTGCTGGAG
CTGATCGTTCGTCGATAATCTTGCCACTCTCCGGGTTGAAGCAATTCCATGAAATGGTTGGCCA
CTTTGTAGATATAATGAAGGACAGGCTGGAAGGGATGACGGGCGCGAACGTGCGCACAGTGGAG
TCCAGTCAGAGATGATTTAGCTTTGAGGTGCTCGACCATGGCCGTTACTGCTGTTATGCCTCCT
CTAGGTTTGTTATGTGGTGTGTGGCTGTGCAGATCACGCAGTATTGGTGGGGATAATAATGTTA
TTTCTCTTTTTTCTTTCTTTCTTTTTTTTCTGAATTCAGTGGTGAGGATTGATTTGTTTGGGAC
TTTTCTTGTCGAGGAATAATAAGCAGTATATTGTTCGTGGGGGTGGTATAAGCTGGTGATTAGC
GTTGTTAGCGTGCATCATATCTTCCTGGTTGAGCTAGCTCTCCATTTCTGCATTGCATTTAGTA
CTGTTACTAACTTACTATTACTATTGCTCTTAGGCTTGCATATCACTCAATGAGGGTAAAATTT
TTTTTATGCAATGCCCGTTCTGCACGAACAATATGTCGTGTGCTGATGAGAGAGGATATATTTA
GTTTCATGCTGTGGTTACCTGAGGGTTCTTTGTATCTGTGACATATCTAAAATTACCCTCTTCT
TTTTTTATTTTTCATAATTTATGCCTGATCAGGCAAATCGGAGGTAATAATATTTTGGTCTTAT
CATGTAACGCAAGCAAAGCAGGAAAATGTGCACATGTTTCTTTTCTTTTGTTTACAGCAAAAAA
GGAAAAAATGTGCACTTGTTTCTTTTCTGTTGTTTATTTCCGTTGTACTATCCTGTCAAGTGTT
AACAGATGCTATATAATGTCATCAGTAACTTGTCTTCGGGTCATTAAGCAAATATAATGGTGTC
AAATCAAATGCTAAGTCGATAAACATAATTTTCTATTTGTGTATTAGTATTTGGTGATCCACGA
GAAATTGACGAGAGCGAGCGAGCGATGGCTGAGGGGGGCTAGCCTCGAGCATCGTGAGGCAGCT
GCTGGGCCCAACCTCGGTTCCTGGGGCGTGCTCTTCAGGCCCATTGGGCCTGAGTTCGCCACCA
TCCGCGTCGCGCGCCGGCGTCGACTGGCTCCGTCCGTCCACAGGATCAAGAATGTCGCCCGTGA
CGCCGACGTCGCAGCGTCTCGGGGTGTGTGGGAGTGGCGGCCCAGCTAGCAATTCGCGCCCAGC
CCCCTCGCCATGGCGCACAGGCTGAGGTCGATCGGGGCCTCAGCCCTCAGGGGCGCAAGCTGGA
CTGGACGCCATCGCCGACTCGCCGCCGCCGCCGCCGCCGCAAAGGACACAGGCTGTCCCGTCCT
CGGCGCTGCGAACGGAGCGAGGAGGAAGACGACGGTCTCCGTACGCCATCCCCCATCGATCGTC
TGCTTCTTCAAGGACCGTACGTTCCAACCGATCGACCCGACGACGAGGCCGGTGTTCGATGATC
ACGCCAGCGCTGGCCCAGGCGATCGTTGCGTTGCGTTGCGATGCGACCTCACCAACCAACCAAC
CTGGAAGCCATCGATCGTATATGATGCTTCCACCGTTCCAATATTCCACGGCCGTCGGCCGACG
TCCTCTACCACCCACGTTCGTATGTACGTATGTCTGTTAGAAGTACATCGATCCTCCGCCATGT
CACTCCTCCACTATCCAAAACGATGTCTCCTCATCAATCCACTACACCAACCGCCTTCCAATAT
CGTTGTATTTTAACCGCCTTTTGCTAGTTAAAGGTGGTGTAAACTCGGACAACATGGTTGAGGC
TTTATTCTAGATCAAGTTTACTAGCCTATACTTGGAGAAATCATATTTTTCTTGAGATCCAAAA
AGAGTTCTTTAAAAAAATTGATTATTATTATAGATCTTGTTTCTTTTAACAGACGGTGATCATT
AAAAAAAGTATAGACTTGCAATATGGGATATTATTTGTCAACTGAAAGATCAGGGTGGACTTGG
AATTCAGAATTTAGAAATCCTAAACCAATGTTTATTGAGTAAATGGTTGTCTAAATTGATAAAT
GAGCAAGGCGTTTGACAAGACTTATTAAAAAGAAAATACCTTAATAATCAAACAATAAATCAAG
TTCAGAAGAAACATAGGATTTTCTTTTTTTGTCAGGCCTCATAAAAGTTAAGAATACTTTCTTA
AATCTGGGTTCCTGGACTATTAATAATGGTGAGCAAGTCAGATTTTGGGAGGATAAATGGCTAG
TATATTATTCCTTTAAGGATAGGTATCCGTCTTTGTATTCAATAGTTAGAAAGAGAAACTTTTC
GATTGCATATGTCATGAGTACTGTTCCACTAAATGTTTCTTTTACGAGAGTTTTAGTAGGTCAG
AATCTGATTAATTGGCATAATTTGTGTGCTTCAATTGTGCATATCCATTTGACAAAGGAAAGTG
ATATATTCCGATGGAATCTTCATCAAAATGGTCAATTCTATGTTCGTTCTATGTATCTAGCTTT
AATTAACAATGGTTACATTGAGAGGAATAAGAACATTTGAAAACTTAATATGCCTCTCAAGATA
AAAGTTTTTATGTGGTACTTACTTGAAGGGGTTGTTTTAACAAAAGATAATTTGGCTAGGAGAA
ATTGAAATGGTAGTTTGAGATGTTGTTTTTTAATAAAAGATGAGACTATTCAATATTTATTTTT
GGAATACCATTATGCAAAGTTTCTATGGAGAGCTTTACAAATTTCTTTTGGTTTATATTCTCCA
CACAATATTTCTCATATCTTTGAGAATTGGCTTGTGGGTAATGATAAAGGAAAAAAAAACTCAT
TCTTGTAGGAGCATCCGCTATATATAGGGCTCTATGGTTGAGTAGAAATAATATGGTTTTGACA
AATCTCCGTCTGTATCTTATATGCAGGTCCTTTTCAGGGCAATGTACTGGCTCCTATCTTGGGC
TCAACTATAAAGGTGTGATGAGGATAACAAGCTAATAAAATATGCATTTTGACTACTTGCGACA
ACGGTTATGTAGCTTTTTGCCAACTTTGGTTGAAAATTCACTAATAGGATTCAATAATCAATAG
GTCTTTGTTTTGTGTGGATATTTATTAGCTTGTGTTTTCTTTAGCCTTGCTGGTGTGTTTTTTT
AAGGCTTGTTTTTATGTGCTAGTTTGTGTGAATTTGTGTAATAATTGGTTGTAGCTCCTTGAGC
AAAGGCTAGGATTTTGTTCCATTATATAAAAAGAAAATTCTTGTGAGCATCCGCATTGTGCTCC
AAAACAAGGCAGTAACAACAAATGCAACCCTTACATTAGGTACTTCATATGTTTTACATTACAA
GACGTTTTGATTTTTTTCCTATTTAACTAAATATATAGAAAAATAATAATATTTACAACACAAA
ATTAGTTTCATTAAAACTAACATTTAATATATTTTGATAATATGTTTGTTTTGTGTTAAAAATA
TTACAAATTTTTCTATAAACTAGGGAAAAAGTCAAAATAACTTGTAATATGAAAAAGAGGGAGT
AGTAAACATCGTGGAAGTAATAAACAACTGCTACCCGGCAATAACACTGTAACCTGATAGTAAG
AAATTAAAAAACATTATTTTTCTCATCTATGTGTTGATTCTCTCCGAANNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGACGTGGAGCTCGTCAGCCAGACGCTGCA
GTTCGAGCACAAGCTGTTCTACTTCGATCTGAAGGAGAACCCGAGGGGGAGGTACCTGAAGATC
TCCGAGAAGACGTCCGCCACGCGCTCCACCATCATCGTCCCCGTCGCCGGCGTCGCCTGGTTCC
TCGACCTCTTCGACTACTACATCCGCACCGACGAGCGCGACGCCTTCAGCAAGGAGCTCCGCCT
CGACACCAAGGTCGCGATTGATTCCGCCGCCCGCTGATTTTTTCTTTATTTTTTTTTTTGGCGC
TGTCTATGTTTGCTGATTTTGGTCGCGGCACGCTCGCGCGCAGGTGTTCTACTTCGATATTGGG
GAGAACAAGAGAGGCCGCTTCCTCAAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021