Detail information of BGIOSGA032377_circ_igg.1


General Information
CircRNA Name BGIOSGA032377_circ_igg.1
ID in PlantcircBase osi_circ_008882
Alias Chr10:1259885_1260605(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr10: 940176-940896  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   igg-circRNA
Identification method CIRI2, find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   CT-CA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCGACCACGATCCCTGTCCCTATCTCTATCACGACGATCACGCTCACGGTCACGGTCACGGTCA
CGACCATGATCTCTCTCCCGGTCCCTTCCTCGTTCCcaaaaggaacaacagacagtaacaccgg
tattacatatccagccttgcaaagcggcagagctcaagcgccaggcaacaagtaaacatgcttc
tgcctctt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CAAAAGGAACAACAGACAGTAACACCGGTATTACATATCCAGCCTTGCAAAGCGGCAGAGCTCA
AGCGCCAGGCAACAAGTAAACATGCTTCTGCCTCTTTTGGCAACAATGACGAGCACCTAGAACA
ACCGTTCAAGCAGCTGAAATGGTGCAAGGATTTGACAGAGATCATCATTAACATTATTAGGGGA
ATAATTACAGTACTAGTAAAGAAAACTGTGATGCCAACAAAAACTTACTGCAGCAATCAAATTT
CAGTTATTGTGCTCATCAGCAGCTTGGTGATACTGGTAGTCACCTTCATCATATGCCTCGCCCT
CTTCAGGGCCTTCAGGTTCTGTGTTGTTAGGTTGCATCTGATAGTACTCATGCTCATGTCGCTT
TGAGCGCTCCGTCTCATAAGCATCATGGCTTTTGTGTTGCTCATAGTTATAGCCATATTCCTGA
TCATAACCAGCCAAATTTCTGTCATGTTTTGGCTCACCGTTGGCATATTCAGCATCTCTCTCAT
GCACGTGACCACGGTCCCGTTCATGACTTGCACGCTCGTAATCTCTCTCACGGTCCCTGCCTCT
CTCACGATGGCGATCATGACCACGGTCACGGTCTCTCTCATAATCCCGACCACGATCCCTGTCC
CTATCTCTATCACGACGATCACGCTCACGGTCACGGTCACGGTCACGACCATGATCTCTCTCCC
GGTCCCTTCCTCGTTCC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021