Detail information of BGIOSGA030459_circ_g.1


General Information
CircRNA Name BGIOSGA030459_circ_g.1
ID in PlantcircBase osi_circ_007995
Alias 9:6484855|6486190
Organism Oryza sativa ssp. indica
Position chr9: 6484855-6486190  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA030459
Parent gene annotation NA
Parent gene strand +
Alternative splicing NA
Support reads NA
Tissues leaf
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered BGIOSGA030459-TA:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GACGATGCAGGTGTATCACCCAAACATCAACTCCAATGGAAGCATTTGCCTTGACATCCTCAAG
GAGCAGTGGAGCCCAGCATTGACCATATCAAAGGTCcaacatcatgcagtgctgggcctgcagg
agaggatttattccattggcaggccacaatcatgggccctagcgacagcccctacgctggtggg
gtgttctt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CAACATCATGCAGTGCTGGGCCTGCAGGAGAGGATTTATTCCATTGGCAGGCCACAATCATGGG
CCCTAGCGACAGCCCCTACGCTGGTGGGGTGTTCTTTGTTAACATCCATTTCCCCCCTGACTAC
CCTTTTAAGCCTCCAAAAGTGAACTTCCAAACAAAGGTGAGTTGTTTGTTTTACCTGTCTCTCT
TTCTTGTTTTTTTAACTTCTTGATTATATTAAATTGTTACTCTTAACCTTATTATTGATATGTA
CTAGATAAGGTAGAGTGCGGTCTTTGGAAATTCAAGATGAATAGGAGAATTTATAAATCAGTCA
ATATCAGTAAAAAGTTATGTACTGGTGTAAATTCTAAAGCACAGTTCACCACAAATTGGCTAAA
ATTTATGCTTCTCCGTAGCATCATTGTTTTCATAGTTAAAATCATACTGACTGTTTATAATCAT
TATTTGCAGTTCTTACTGTCACATTGCTACTGTGATTATCACTTTGTGTCCCAGATAGCAGGAG
ATCCCTTGCATAATTTCATTAAGATAATGGGGTTAGGAAAATAAGTATAAGGTTGACAAAACAG
AAAACAGGGGAAAAGCAGGGGAAAAACATAAGAAAAATGCTCTGCCTAACTATAATGCGACTCT
AAGCTTGAGCTGGTAGTATTGCACTTCTGACAAATTACTTGGGCAAAGGCTGTTGCAGACTGAA
ATTCTCATTCAATTGCATGCTTTGTTACATGCTTCGGAAATGCCATGTAGCGATGTTTCTCCAG
GTGAGTCCCAAATTAAAATCATCAAAAATTGTAACCAGTAAGGCTATATAGCTTCTTCACAAAT
TGGGATGGACAATATGGAGTTTATATTTGATAGTTCCAATCTGTCTGCGCTCAGCAATGATTCA
CTGCCATTCCCAGATGTAACTGAAATCATGTTGGTTCCCTAGAGTGTGGCCCCACTATCATAAT
CTCTTCAAGGAATGAGTTGAACAAAGAATTGATAACAATATGTGCTAACAGTTTGCAGTAATCT
TTCCGATATATCAGAAAAGAACAGTTGTATTGCTATCCTGTTCTAAATATCAGGAAAGATTCAA
GCAAGACACATTGTATTAATTCACCTAGCTAGTTACTAGATTGTTATGACGCTGGCGTAAAAGC
CTAGATGATTTGATAAATTATTCTGAAGTTAGTGATATTTGTCATTTTTCTCCACTAATGCCAT
AAATGATGAATCGTTTCACTGACGATGCAGGTGTATCACCCAAACATCAACTCCAATGGAAGCA
TTTGCCTTGACATCCTCAAGGAGCAGTGGAGCCCAGCATTGACCATATCAAAGGTC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021