Detail information of Os12g0633600_circ_g.2


General Information
CircRNA Name Os12g0633600_circ_g.2
ID in PlantcircBase osa_circ_012462
Alias NA
Organism Oryza sativa
Position chr12: 27156847-27157436  JBrowse»
Reference genome IRGSP-1.0.38
Type   ui-circRNA
Identification method CIRCexplorer
Parent gene Os12g0633650
Parent gene annotation Hypothetical protein. (Os12t0633650-00)
Parent gene strand +
Alternative splicing NA
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os12t0633600-01:2
Os12t0633650-00:2
Os12t0633600-01:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTCCGCACAGACAGCACCGGTATGAAATTGCTCGACACCTCTGATCAATAGTGCTGTCTGTAAA
ATGTTTGAATTTCCTGTATGCCTTCTTAGCACCAGTttctccagtatccccttcaggaaaggaa
gcctctgctgcaactgctctagctgagatagtccttgtataaatgtcactggtatcagaaagaa
taacataa
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 494
Transcript exons: 27156847-27157145,27157242-27157436
TTCTCCAGTATCCCCTTCAGGAAAGGAAGCCTCTGCTGCAACTGCTCTAGCTGAGATAGTCCTT
GTATAAATGTCACTGGTATCAGAAAGAATAACATAAAAACAATTGAACCAAGGAGCGTAGCTAT
TCGGCGAATCCAAAGCTGCTTATAAGGTAGCCAAAGATTTGACCAATACACATCATCTGGTTCT
GGAGCTAGATCAGTAACCCATTTCATAGGGTTAGATGTTTGGAGTATTTCTGAGGCAACAAGAG
CAGCATACCGAGTTCTGAAATATACAAAAGCAGCTGCACATTCCTGATCATCTAGTTTCAAGCT
GGAATCTTGAAGGTCAGATTTCCCCTGATTCTGCTCAAGCCCAGTTGCCAACAGCTGGAAAGAA
TTAGATGAGGCTCCGCACAGACAGCACCGGTATGAAATTGCTCGACACCTCTGATCAATAGTGC
TGTCTGTAAAATGTTTGAATTTCCTGTATGCCTTCTTAGCACCAGT

Genomic sequence TTCTCCAGTATCCCCTTCAGGAAAGGAAGCCTCTGCTGCAACTGCTCTAGCTGAGATAGTCCTT
GTATAAATGTCACTGGTATCAGAAAGAATAACATAAAAACAATTGAACCAAGGAGCGTAGCTAT
TCGGCGAATCCAAAGCTGCTTATAAGGTAGCCAAAGATTTGACCAATACACATCATCTGGTTCT
GGAGCTAGATCAGTAACCCATTTCATAGGGTTAGATGTTTGGAGTATTTCTGAGGCAACAAGAG
CAGCATACCGAGTTCTGAAATATACAAAAGCAGCTGCACATTCCTGGTACAATTCAACAGTTAA
AGTTACTGGTTTTATACTGACTAATTGACGAACTACCAGTAAAAGAGCTAATATTTGTGAGATT
ACAAGTTCAACCTGATCATCTAGTTTCAAGCTGGAATCTTGAAGGTCAGATTTCCCCTGATTCT
GCTCAAGCCCAGTTGCCAACAGCTGGAAAGAATTAGATGAGGCTCCGCACAGACAGCACCGGTA
TGAAATTGCTCGACACCTCTGATCAATAGTGCTGTCTGTAAAATGTTTGAATTTCCTGTATGCC
TTCTTAGCACCAGT
Conservation Information
Conserved circRNAs osi_circ_008994
PMCS 0.363727684
Functional Information
Coding potential Y
Potential coding position 27157402-27156897(+)
27157066-27157258(-)
Potential amino acid sequence MFEFPVCLLSTSFSSIPFRKGSLCCNCSS*(+)
MKWVTDLAPEPDDVYWSNLWLPYKQLWIRRIATLLGSIVFMLFFLIPVTFIQGLSQLEQLQQRL
PFLKGILEKLVLRRHTGNSNILQTALLIRGVEQFHTGAVCAEPHLILSSCWQLGLSRIRGNLTF
KIPA*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017