Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d018890_circ_g.1 |
ID in PlantcircBase | zma_circ_009221 |
Alias | zma_circ_0002760 |
Organism | Zea mays |
Position | chr7: 8472251-8476220 JBrowse» |
Reference genome | AGPv4.38 |
Type | ue-circRNA |
Identification method | find_circ |
Parent gene | Zm00001d018890 |
Parent gene annotation |
Probable transcriptional regulator SLK2 |
Parent gene strand | + |
Alternative splicing | Zm00001d018890_circ_g.2 |
Support reads | NA |
Tissues | leaf, root |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Zm00001d018890_T002:5 Zm00001d018890_T006:7 Zm00001d018890_T004:7 Zm00001d018890_T001:5 Zm00001d018890_T003:6 Zm00001d018890_T007:8 Zm00001d018890_T008:4 Zm00001d018890_T005:7 Zm00001d018890_T009:3 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.151223309 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
8472332-8472328(+) 8472263-8475181(-) |
Potential amino acid sequence |
MIDANSSFSGGAQLQPSTSMNTYSFMPAPSSPISFSSNNISGSSVIDGSIVQQSPPQDQAQKQR SSSLTSHPIIEAGGALHAPKKLRIDVRQDELQQQLIQRLLHGQGSLHLQGQQNPQLQALIQQHN LAHMQQRQQQLLQSFAQTQPSQIGIPHQPQLPPSLAQPGIAVPVRTPVNNGLCSRRLMQYLYHK RRRPENNPITYWRKLVEEYFAPTARERWCVSSYEKRANASVSTAQTAQDVWRCDICKTHGAKGY ESTYEVLPRLCQIRFDHGVIDEYLFLDMTKPNEFQLPNGLMVLEHTKVVQKSVYEHLHVIHEGH LRIIFTPELKIMSWEFCSRRHEEYITRRVLAPKVNNLLQVAQKFQTAATENGPAGVSNNDAQTI CNMFVAASRQLAKNLEHHTLNEHGLSKRYVRCLQVLVINIGRSLLVIPAMCPAFIGDSSG*(+) MTRTCRQRTYRLERPCSFKVWCSRFFASCRDAATNMLQMVCASLFETPAGPFSVAAVWNFWATC SKLLTFGARTRRVIYSSCRREQNSHDMIFNSGVNMILKCPSCITCRCS*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ma et al., 2021b |