Detail information of Zm00001d018890_circ_g.1


General Information
CircRNA Name Zm00001d018890_circ_g.1
ID in PlantcircBase zma_circ_009221
Alias zma_circ_0002760
Organism Zea mays
Position chr7: 8472251-8476220  JBrowse»
Reference genome AGPv4.38
Type   ue-circRNA
Identification method find_circ
Parent gene Zm00001d018890
Parent gene annotation Probable transcriptional regulator SLK2
Parent gene strand +
Alternative splicing Zm00001d018890_circ_g.2
Support reads NA
Tissues leaf, root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Zm00001d018890_T002:5
Zm00001d018890_T006:7
Zm00001d018890_T004:7
Zm00001d018890_T001:5
Zm00001d018890_T003:6
Zm00001d018890_T007:8
Zm00001d018890_T008:4
Zm00001d018890_T005:7
Zm00001d018890_T009:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGTTAGGTTTGTGGCTGCATCACGACAACTAGCGAAGAATCTGGAGCACCACACCTTGAATGAA
CATGGCCTTTCTAAACGATATGTTCGCTGCCTGCAGgttctagtcataaatattggaagatctt
tattggtaattccagctatgtgccctgcctttattggagattcttcagggtgatgatagatgcc
aattcatc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTTCTAGTCATAAATATTGGAAGATCTTTATTGGTAATTCCAGCTATGTGCCCTGCCTTTATTG
GAGATTCTTCAGGGTGATGATAGATGCCAATTCATCATTCTCTGGAGGTGCTCAGTTGCAGCCA
AGTACAAGCATGAATACTTATTCCTTCATGCCTGCTCCATCGTCCCCAATATCATTTTCATCAA
ATAACATCTCTGGCTCTTCAGTCATTGATGGCTCCATTGTGCAGCAAAGTCCACCCCAAGACCA
GGCGCAAAAGCAGAGGTCTTCAAGTCTAACATCACATCCTATTATTGAGGCTGGTGGTGCATTG
CATGCTCCAAAGAAATTAAGAATTGATGTTAGGCAAGATGAACTGCAGCAACAGCTGATTCAGC
GTCTGCTCCATGGTCAGGGTTCTCTTCATCTCCAGGGGCAACAGAACCCACAGCTTCAAGCTTT
GATCCAGCAGCATAATCTGGCACATATGCAGCAGAGGCAGCAGCAGCTGCTGCAATCATTTGCT
CAGACACAACCATCTCAAATTGGCATTCCTCATCAGCCTCAGCTTCCGCCATCACTAGCACAGC
CTGGAATAGCTGTACCTGTTAGGACTCCTGTCAACAATGGCCTTTGTTCCCGCAGGCTAATGCA
GTATTTATATCACAAGCGTCGTCGTCCGGAGGTGCGTTTGTGTTTCTGCGTTTTATACATTGAT
CATAAGATTACGAGATGCAAGCCCTGTGCAGTACAATTTATTGGTACACTGCATTGTAGAATAA
TCCCATAACATATTGGAGGAAGCTTGTTGAGGAATATTTTGCACCAACAGCAAGAGAAAGATGG
TGTGTGTCATCTTACGAAAAGAGAGCGAATGCTTCAGTTTCTACTGCACAAACGGCTCAGGTTA
GTTAACAGTGTATGCTTCACAGTGGCAAATTTGCATGCAATTGCATTGTTCTTGACTTCTTAGT
TTTGTGTTCCATGTCCAGCACCACTTTTGCTGTCTGGCATCACTTCCTTCTTGATTCCAAAATA
AGATTGATTGTCATTTTCTTAAACTTCTGCTTGATCATTGAATATCAGATCTAATTTAGTAGCT
TTTAGTGGCTTCAGAATAGAGTTTGTAGGTATAGCTTTCTGTAGTAAAGATTTTCTTATTACAG
TAGCTAAATAGAAAAGACAGTTCTTTTCGCTGTTGCAGATTTACAGTTAATGTGAAGGGGAATA
TTTCTTGTTTCTCCTTAAAATTTGCAAAAGGTGATGGATATATGTACCCCCTTCATACAATCCT
GTTTTATCCACTGCAGGACGTGTGGCGATGTGACATATGCAAAACACATGGTGCAAAAGGATAT
GGTTAGCTAATTTTGTCAACTCTGCCAAACTATATTCATGATATATTTTGGTATTAAAAAATTT
AGTTTTTGTAAGTTTTCTTTGAAACTTGTTGATCTCGTGTTAGTTGTTAGCAGCAAACTCTACT
TTCCTATGTATATATCTTGTGGTTTTTTTTCTTTCTCGAACACGCAGGAGAACTGCGCATCATT
ATATTGAAAGAGAGAAAGGTCCGAAATGGACCAAAGTACAAAGCCATAACAGGCAAAAATAAAT
AGAAAATAAAACAGTGCAGCCTCATGCACTAGGAAAAGCCCTAGCCCCCCTAGCAAATGCAGCC
AGAAGCCCAAGACTCTCGAGCTGCTTCGCACCAGCCATACACCAACACTCCACCTCATCCAAGA
AAAGCCTCTGAATGGTGCTTAATGACGGGTTGACACCATCAAATACCGCCTTATTGCGATGCAG
CCATAAACACCAGGCCCCCAGGATAATGAGACTATGGAAACCTTTTCTGATATGTTTGGGGACC
CTCCTATGCACCTTGCCCCACCAATCCACAAAAGAGCCCGCCTCCCTAGTAGGCGTAAGATGTC
CCATCCTCAAAGCTGAAAATATAACATGCCAAAATTGTCTAGCGAAACTGCAAGAGCACAAGAG
GTGCAAGATAGTTTCCTGCTCTTGATCACATAGTGGACAGACCACCGGGTGAGGTAATCCTTTC
CTCTGAAGTCTATCCGCAGTCCAACATTTATTCCTTATCGCCAGCCAAACAAAAAATTTGCATT
TGGGGGGTGCCCACGACTTCCACACCCATTTCCATGGCTGGAAAGTAATAGCTCCCATAAACAA
CGCCGAATAACAAGATTTGGAAGAGAAAACACCAGAGCTCGAGTGGTTTAACAAAGATGAATTA
TATGCAGTTTCACATTGAATCTGTGGTAAACCTACATGAATTTCTAAAGGCTGGACAAAGCATG
AATTTATTGTCTTGTGGTTTACAAATTCAACACAGTTGCAGGCCAGAAGAAATATGAATTATTT
GATAATACAAATGGTAATAATGTGTGGTGCATAGGCATCAAGAATGAATATTAGTTGTCTCGTG
CATATATGCTGAGTGGCGATAATTATACTGTGCACATGCATTTGAAATGTGACTGATGATTGAT
CAGAGTATCAGACACAAATGATGAACAATTAAAACAGCATGGTGGCATCGTTTCAATGTCTAGT
TGTCATCTAGCTTTTCACATTGAATCTGTGGTAAACCAATATTAGCTAAATTGTGGTATGTATG
CAATGTGCACCATGCAAGTGCTATTGCATAATACAGATGCACATCTTAGTGTTTCTTGGACAGT
AGCTTTCTCCTCTCTGGGTTGTTGTTTGTAATACAAGTATCTCTTACCCAGGTATCCTTTTTTA
TGTCTGATCTCTCTGACAGAATCTACCTATGAAGTGCTTCCTAGACTCTGTCAAATTAGATTTG
ATCATGGTGTTATAGACGAATACCTATTCCTTGACATGACCAAGCCCAACGAATTCCAATTGCC
TAATGGACTAATGGTGCTGGAGCATACAAAAGTTGTTCAAAAGAGCGTTTATGAACACCTACAT
GTTATACATGAGGGGCATTTGAGAATCATATTCACACCAGAATTAAAGGTAAGTTTCTTGGTGC
AGTAGTTCACACATGCAAGTGCAGTTTTTGTAGCCTGTCCATGTTATGTGTAGCATTGTAATCA
TAGAAATGGTCTCAAGCAAGGGTCGATAAAAGTTCTTATCTACCATTGACTCAGATCATGTCAT
GGGAGTTCTGTTCACGACGACATGAAGAGTATATCACTCGCCGGGTTCTGGCACCGAAGGTGGA
TTTCTTATACTAGCGCAGTGCTCCACTTTAATTTGGCTCCAGATATTTTAATTGTAACTTTCCC
TTGCCTAGCTACATAGTTATATAGTTATTTCTTGGCAACCTAGGTCTTAGGTAATAAACTATAC
ATGATGCAGCATAAGTCTAATTACTTAGGACAATTTTATAAATGGGTGAAAAATGCCTCTTGTC
ACAACCAGACTTCTTCCACAGCTATTTGGATTCACCTTCATTCTTCATTGACGTAGTTCAGATT
TCAGAAGTGCTTCGTGATACCCCAGCGAGGATCAAAACCATTTCCATGACATCTTAATTTAAAT
CTGTACTCTTTAAGGCATGCCCTAAGTGGATGTCCATGTTTTACATGTGTAGCCATCATTGATG
ACTAATAATGATATCTTATACTGTACGCATGGTTCTGCCTTTCAGGTCAATAATTTGCTACAGG
TTGCCCAGAAATTCCAAACCGCTGCCACTGAAAATGGTCCTGCTGGGGTTTCAAATAATGATGC
ACAAACCATTTGCAACATGTTAGTAAAGAAACTACACCTTCAGTGCTGTAGCATCCATTACATA
GAGATGTTTTGCCATGATAAATAGAAAATCCTGAATCTCAGAGCAATCTTGTTCTTTTTTTGTG
CTAATGCAAAGGTGTCATTTTCATTTGTACTGTTAGGTTTGTGGCTGCATCACGACAACTAGCG
AAGAATCTGGAGCACCACACCTTGAATGAACATGGCCTTTCTAAACGATATGTTCGCTGCCTGC
AG
Conservation Information
Conserved circRNAs NA
PMCS 0.151223309
Functional Information
Coding potential Y
Potential coding position 8472332-8472328(+)
8472263-8475181(-)
Potential amino acid sequence MIDANSSFSGGAQLQPSTSMNTYSFMPAPSSPISFSSNNISGSSVIDGSIVQQSPPQDQAQKQR
SSSLTSHPIIEAGGALHAPKKLRIDVRQDELQQQLIQRLLHGQGSLHLQGQQNPQLQALIQQHN
LAHMQQRQQQLLQSFAQTQPSQIGIPHQPQLPPSLAQPGIAVPVRTPVNNGLCSRRLMQYLYHK
RRRPENNPITYWRKLVEEYFAPTARERWCVSSYEKRANASVSTAQTAQDVWRCDICKTHGAKGY
ESTYEVLPRLCQIRFDHGVIDEYLFLDMTKPNEFQLPNGLMVLEHTKVVQKSVYEHLHVIHEGH
LRIIFTPELKIMSWEFCSRRHEEYITRRVLAPKVNNLLQVAQKFQTAATENGPAGVSNNDAQTI
CNMFVAASRQLAKNLEHHTLNEHGLSKRYVRCLQVLVINIGRSLLVIPAMCPAFIGDSSG*(+)
MTRTCRQRTYRLERPCSFKVWCSRFFASCRDAATNMLQMVCASLFETPAGPFSVAAVWNFWATC
SKLLTFGARTRRVIYSSCRREQNSHDMIFNSGVNMILKCPSCITCRCS*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ma et al., 2021b