Detail information of Os10g0456900_circ_ig.1


General Information
CircRNA Name Os10g0456900_circ_ig.1
ID in PlantcircBase osa_circ_006982
Alias Os_ciR6766
Organism Oryza sativa
Position chr10: 16716930-16717506  JBrowse»
Reference genome IRGSP-1.0.38
Type   ig-circRNA
Identification method CIRCexplorer, find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Os10g0456900_circ_ig.2
Support reads 2/1
Tissues root/root
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AACACCAGCACCATCAGAAAGTTCACCATGGAAGGCCAGTAGGAGATGCAACCTTCTCTTGAAT
TCACCAATGCTTGATGTTTGAACAAACTCCTCAACAattgaaacactgcagaagcttaaaaact
ttttgcctcgtcctcttgaaattctcaatagaagcactgtgtggatcttgctcccaacggtaaa
gcttgacc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ATTGAAACACTGCAGAAGCTTAAAAACTTTTTGCCTCGTCCTCTTGAAATTCTCAATAGAAGCA
CTGTGTGGATCTTGCTCCCAACGGTAAAGCTTGACCTGATCTTTCAAGTCCTTTTCTATTGATC
CTTTACCACCTTCAATTTCCCCAAGAACACTGATGTCATGAAAACGTTAGTTATAACCCACCAT
GAAGAAATGAACAAGGAAAAACTTCACATAAATCACGAAAAGCAACTCACAGTGGCAAGAACTG
CATGTAGTACCCAAACATGTTGTACAGAATATTCTGGATTTTCTTCAACGAGTTACTGTCAAGA
AACATAAAGTCAGAAAATGATGCCCATTTTCAAAACAAAGCACACCCAGTTTTCAGAACAGTGA
AAAATTATAATGGGCAATTCAAAATGAAATTAACAATCATGCTGTACTAAACAAAGTGGAACAA
GACTCTTGATCTCACCTTGAATAAGCACCAACACCAGCACCATCAGAAAGTTCACCATGGAAGG
CCAGTAGGAGATGCAACCTTCTCTTGAATTCACCAATGCTTGATGTTTGAACAAACTCCTCAAC
A
Conservation Information
Conserved circRNAs osi_circ_008458
PMCS 0.291467605
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015;Chu et al., 2017