Detail information of Zm00001d012815_circ_g.2


General Information
CircRNA Name Zm00001d012815_circ_g.2
ID in PlantcircBase zma_circ_008333
Alias zma_circ_0002221
Organism Zea mays
Position chr5: 784149-786929  JBrowse»
Reference genome AGPv4.38
Type   ue-circRNA
Identification method find_circ
Parent gene Zm00001d012815
Parent gene annotation Protein EXPORTIN 1A
Parent gene strand +
Alternative splicing NA
Support reads NA
Tissues leaf, root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Zm00001d012815_T010:10
Zm00001d012815_T003:10
Zm00001d012815_T002:10
Zm00001d012815_T024:10
Zm00001d012815_T030:10
Zm00001d012815_T019:10
Zm00001d012815_T033:10
Zm00001d012815_T026:10
Zm00001d012815_T025:10
Zm00001d012815_T012:10
Zm00001d012815_T013:10
Zm00001d012815_T011:10
Zm00001d012815_T036:10
Zm00001d012815_T035:10
Zm00001d012815_T020:10
Zm00001d012815_T005:10
Zm00001d012815_T038:10
Zm00001d012815_T015:10
Zm00001d012815_T037:10
Zm00001d012815_T004:10
Zm00001d012815_T007:10
Zm00001d012815_T022:9
Zm00001d012815_T008:10
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCTATACGCGGAAGAGGCTGCTGCCCAAAGAGAAAGGGAGCGCCAACGAATGCTTGCCATTCCG
GGGCTGATTGCCCCTAGCGAATTGCAAGACGAGATGacaaacacaagtgttgcgagctcccttg
gaccacacttcttcccacagatttctctaattttcttggacatgctaacagtctacaggtatgt
gtgctgca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ACAAACACAAGTGTTGCGAGCTCCCTTGGACCACACTTCTTCCCACAGATTTCTCTAATTTTCT
TGGACATGCTAACAGTCTACAGGTATGTGTGCTGCATCATTTGTTACTAGTGTTTTAGCTTGGG
TTAGATATGAGGTCTGAAAAGCACTTGTATTGTATGTACCCTTTCCATAGAACACTTACATGAC
TAAAATCATGTTGTGTAGTTAGGTGTCTGCTGCGCTCTGGGCAAGCCTCCGGTAGTTACATGTT
TGCTGAAAGACCATAATTCCCCATACATTTTACTCACTGTGCCTCCCCTTTTTGTTGTGATAGC
ACTAGTGCATTCATCTTCTTATTTCTTCAAAGCTAATGTTTCACTAGCTAATGGACCCTCTCTT
TCCTGTCATACATTTTCTTCATATCAGAATGTACAGTGAGCTTGTATCAAGCACGATCGCTGAA
GGAGGACCATTTGCCTCAAGGACATCATTTGTAAAACTATTGAGGTATGAACTATTGATTTATG
TACTTCCCTAAAAAGTATTATTTCCTTTTAGGTGATATCTGCCATAAGTGTGGGGCATATGGTA
CCTGTAGAAAGGTCTGCTGTGATTACATTGGTTACCTTGCCTAATGGCTGTATATGATGACATA
AAGAAGTTAGAGATATGTGAATATGTAATCCATTTTGTTGAATGCATCAGTAGTATAAGAAATA
ACCTCTTTGCTGTCACTACTTTGTTTTTTTATGTAGATGTCCCTCAAACGACAACATGATTTTG
AATATCTCATTGTCTTTTTACTAAATTACTTTGTATTTGTGACAGATCTGTCAAGAGGGAAACC
CTAAAGTTGATCGAGACTTTTGTGGACAAGGCAGAAGATTTACCGCACTTAGGAAAGCAGTTTG
TTCCACCAATGATGGATCCTGTCCTTGGTGATTATGCTAGAAATGTACCCGATGCAAGGGAGTC
TGAAGTTCTGTCTTTGTTTGCAACAATCATTAACAAGTATGCCTGCTCTTTATTCATTCTGTGT
CATGGCCACATGTCAATTTTTTTTAACTAAACAGCACCTGAAAATTTTAAAAACTGACCCTTAA
AAAAGTTACGTTGGATCTCTAGAGCCACAATCTAATCATGTATTCCATTCTTGGCTATTTCTCA
TTAGTTGTATCTTTGCATCAATTCTAACGGTTAAATTTCTCCTGCAGGTACAAAGGGGAAATGC
TTGAGGATGTGCCTCGTATATTTGAGGCTGTTTTCCAGTGCACTCTTGAGGTAGGAATACTATT
ACTAAGTTGCTTGTGTTACTGATTTTCTTTTCAAGTACATCTTGATGTAACATTTAATTGCTTA
TGCTCTCCCATCAGATGATTACTAAGAACTTTGAAGATTATCCTGAGCACCGCCTCAAATTTTT
TTCTTTGCTCCGTGCAATTGGCACCCATTGCTTCCAAGCATTAATCCAGCTTTCAAGCCAGGTT
TGTAGTAACCCTTTGTTTTGAGGTGTTGATGTAAAATATTTAAATTATTATGTTTTATATGATT
ATTATTTGACTTTGTGTTTCAGCAATTGAAGCTTGTGATCGATTCGATTAATTGGGCGTTCAGA
CATACCGAGAGAAATATCGCAGAGACTGGCCTTAGTCTATTGTTGGAAATTTTGAAGAACTTTG
AGGTAGAAGAACATGTTCTGTCCAATGCTGGCATTATTATAATAACTATATATGGTAGCTAACT
ATCCCATGTGATCTGTTTGCAGGCTTCAGGATTCCAAAATCAATTCTACAAAACCTACTTTTTG
ACAATTGAGCAAGAGATTTTTGCAGTTCTCACAGACACATTCCACAAACCTGGTTTCAAGCTTC
ATGTTTTGGTGCTCCAACACTTATTTTATGTGGTATGCTTATATCCCCCCTCCCCTGGTAACCC
ATCATTTTATTTGTTCATCTAATTATTGGATTTGCTTATATGTAGGTTGATAGTCTAACTGAGC
CTCTATGGGATTCTTCATCAGTACCATATCAATATACGGATAATGCCACGTTTGTTCGAGATTA
CACCATAAAACTCTTAGGAACATCATTTCCTAACATGACTGTAGCTGAGGTATGATTGCAGGCA
CAGAGTGCTTTGGTTGCGCCTTAAGTTCACAAACCTAACAGGGAGTTTTGGACAGGTGACCAAG
TTTGTGGATGGCCTTCTTAGTTCAAAACTTGATCTTCCGAGCTTCAAAAACCATATTAGAGATT
TCCTGGTGCAGTCGAAGGAGTTCTCAGCTCAGGTAGCCTCCTTGGTTTCTCGCTTGCCATCACC
TCTATACTGATTATTATGCATTTGATGGAGGCAAACCAAAAGAGATAAATAGGGATGTGAGACT
AGCACAACTAGGCTATAGGAATAAGGATGCATTTCTTGCTTACCACTCTTGCCATCACCTCTAG
ACTGATTATTATGCATTTGATTGAGGCAAACCCAAAAGAGATAAATAGGGATGTGACAGACTAC
CACAACTAGGCTCTAGGAATAAGGATGCATTTCATGCTTATACCATATACTATGGTTTGCATGT
GCCTGTAGAGCGGATGGTCCCACCAGCAAACTAGTGATGAATTTAGTTCCTGCTGCCTTTTGTT
TGCAAACAAATTGACGTGTTTGTGGTGGCTTGTCTTGTGCTTCCAGGATAACAAGGATCTATAC
GCGGAAGAGGCTGCTGCCCAAAGAGAAAGGGAGCGCCAACGAATGCTTGCCATTCCGGGGCTGA
TTGCCCCTAGCGAATTGCAAGACGAGATG
Conservation Information
Conserved circRNAs NA
PMCS 0.055351981
Functional Information
Coding potential Y
Potential coding position 784219-786926(+)
784221-786419(-)
784626-786909(-)
Potential amino acid sequence MLTVYRMYSELVSSTIAEGGPFASRTSFVKLLRSVKRETLKLIETFVDKAEDLPHLGKQFVPPM
MDPVLGDYARNVPDARESEVLSLFATIINKYKGEMLEDVPRIFEAVFQCTLEMITKNFEDYPEH
RLKFFSLLRAIGTHCFQALIQLSSQQLKLVIDSINWAFRHTERNIAETGLSLLLEILKNFEASG
FQNQFYKTYFLTIEQEIFAVLTDTFHKPGFKLHVLVLQHLFYVVDSLTEPLWDSSSVPYQYTDN
ATFVRDYTIKLLGTSFPNMTVAEVTKFVDGLLSSKLDLPSFKNHIRDFLVQSKEFSAQDNKDLY
AEEAAAQRERERQRMLAIPGLIAPSELQDEMTNTSVASSLGPHFFPQISLIFLDMLTVYRMYSE
LVSSTIAEGGPFASRTSFVKLLRSVKRETLKLIETFVDKAEDLPHLGKQFVPPMMDPVLGDYAR
NVPDARESEVLSLFATIINKYKGEMLEDVPRIFEAVFQCTLEMITKNFEDYPEHRLKFFSLLRA
IGTHCFQALIQLSSQQLKLVIDSINWAFRHTERNIAETGLSLLLEILKNFEASGFQNQFYKTYF
LTIEQEIFAVLTDTFHKPGFKLHVLVLQHLFYVVDSLTEPLWDSSSVPYQYTDNATFVRDYTIK
LLGTSFPNMTVAEVTKFVDGLLSSKLDLPSFKNHIRDFLVQSKEFSAQDNKDLYAEEAAAQRER
ERQRMLAIPGLIAPSELQDEMTNTSVASSLGPHFFPQISLIFLDMLTVYRMYSELVSSTIAEGG
PFASRTSFVKLLRSVKRETLKLIETFVDKAEDLPHLGKQFVPPMMDPVLGDYARNVPDARESEV
LSLFATIINKYKGEMLEDVPRIFEAVFQCTLEMITKNFEDYPEHRLKFFSLLRAIGTHCFQALI
QLSSQQLKLVIDSINWAFRHTERNIAETGLSLLLEILKNFEASGFQNQFYKTYFLTIEQEIFAV
LTDTFHKPGFKLHVLVLQHLFYVVDSLTEPLWDSSSVPYQYTDNATFVRDYTIKLLGTSFPNMT
VAEVTKFVDGLLSSKLDLPSFKNHIRDFLVQSKEFSAQDNKDLYAEEAAAQRERERQRMLAIPG
LIAPSELQDEMTNTSVASSLGPHFFPQISLIFLDMLTVYRMYSELVSSTIAEGGPFASRTSFVK
LLRSVKRETLKLIETFVDKAEDLPHLGKQFVPPMMDPVLGDYARNVPDARESEVLSLFATIINK
YKGEMLEDVPRIFEAVFQCTLEMITKNFEDYPEHRLKFFSLLRAIGTHCFQALIQLSSQQLKLV
IDSINWAFRHTERNIAETGLSLLLEILKNFEASGFQNQFYKTYFLTIEQEIFAVLTDTFHKPGF
KLHVLVLQHLFYVVDSLTEPLWDSSSVPYQYTDNATFVRDYTIKLLGTSFPNMTVAEVTKFVDG
LLSSKLDLPSFKNHIRDFLVQSKEFSAQDNKDLYAEEAAAQRERERQRMLAIPGLIAPSELQDE
M(+)
MSKKIREICGKKCGPRELATLVFVISSCNSLGAISPGMASIRWRSLSLWAAASSAYRSLLS*(-
)
MMSLRQMVLLQRSCLIQAHCTFCRLLACPRKLEKSVGRSVVQGSSQHLCLSSRLAIR*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ma et al., 2021b