Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d012815_circ_g.2 |
ID in PlantcircBase | zma_circ_008333 |
Alias | zma_circ_0002221 |
Organism | Zea mays |
Position | chr5: 784149-786929 JBrowse» |
Reference genome | AGPv4.38 |
Type | ue-circRNA |
Identification method | find_circ |
Parent gene | Zm00001d012815 |
Parent gene annotation |
Protein EXPORTIN 1A |
Parent gene strand | + |
Alternative splicing | NA |
Support reads | NA |
Tissues | leaf, root |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Zm00001d012815_T010:10 Zm00001d012815_T003:10 Zm00001d012815_T002:10 Zm00001d012815_T024:10 Zm00001d012815_T030:10 Zm00001d012815_T019:10 Zm00001d012815_T033:10 Zm00001d012815_T026:10 Zm00001d012815_T025:10 Zm00001d012815_T012:10 Zm00001d012815_T013:10 Zm00001d012815_T011:10 Zm00001d012815_T036:10 Zm00001d012815_T035:10 Zm00001d012815_T020:10 Zm00001d012815_T005:10 Zm00001d012815_T038:10 Zm00001d012815_T015:10 Zm00001d012815_T037:10 Zm00001d012815_T004:10 Zm00001d012815_T007:10 Zm00001d012815_T022:9 Zm00001d012815_T008:10 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.055351981 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
784219-786926(+) 784221-786419(-) 784626-786909(-) |
Potential amino acid sequence |
MLTVYRMYSELVSSTIAEGGPFASRTSFVKLLRSVKRETLKLIETFVDKAEDLPHLGKQFVPPM MDPVLGDYARNVPDARESEVLSLFATIINKYKGEMLEDVPRIFEAVFQCTLEMITKNFEDYPEH RLKFFSLLRAIGTHCFQALIQLSSQQLKLVIDSINWAFRHTERNIAETGLSLLLEILKNFEASG FQNQFYKTYFLTIEQEIFAVLTDTFHKPGFKLHVLVLQHLFYVVDSLTEPLWDSSSVPYQYTDN ATFVRDYTIKLLGTSFPNMTVAEVTKFVDGLLSSKLDLPSFKNHIRDFLVQSKEFSAQDNKDLY AEEAAAQRERERQRMLAIPGLIAPSELQDEMTNTSVASSLGPHFFPQISLIFLDMLTVYRMYSE LVSSTIAEGGPFASRTSFVKLLRSVKRETLKLIETFVDKAEDLPHLGKQFVPPMMDPVLGDYAR NVPDARESEVLSLFATIINKYKGEMLEDVPRIFEAVFQCTLEMITKNFEDYPEHRLKFFSLLRA IGTHCFQALIQLSSQQLKLVIDSINWAFRHTERNIAETGLSLLLEILKNFEASGFQNQFYKTYF LTIEQEIFAVLTDTFHKPGFKLHVLVLQHLFYVVDSLTEPLWDSSSVPYQYTDNATFVRDYTIK LLGTSFPNMTVAEVTKFVDGLLSSKLDLPSFKNHIRDFLVQSKEFSAQDNKDLYAEEAAAQRER ERQRMLAIPGLIAPSELQDEMTNTSVASSLGPHFFPQISLIFLDMLTVYRMYSELVSSTIAEGG PFASRTSFVKLLRSVKRETLKLIETFVDKAEDLPHLGKQFVPPMMDPVLGDYARNVPDARESEV LSLFATIINKYKGEMLEDVPRIFEAVFQCTLEMITKNFEDYPEHRLKFFSLLRAIGTHCFQALI QLSSQQLKLVIDSINWAFRHTERNIAETGLSLLLEILKNFEASGFQNQFYKTYFLTIEQEIFAV LTDTFHKPGFKLHVLVLQHLFYVVDSLTEPLWDSSSVPYQYTDNATFVRDYTIKLLGTSFPNMT VAEVTKFVDGLLSSKLDLPSFKNHIRDFLVQSKEFSAQDNKDLYAEEAAAQRERERQRMLAIPG LIAPSELQDEMTNTSVASSLGPHFFPQISLIFLDMLTVYRMYSELVSSTIAEGGPFASRTSFVK LLRSVKRETLKLIETFVDKAEDLPHLGKQFVPPMMDPVLGDYARNVPDARESEVLSLFATIINK YKGEMLEDVPRIFEAVFQCTLEMITKNFEDYPEHRLKFFSLLRAIGTHCFQALIQLSSQQLKLV IDSINWAFRHTERNIAETGLSLLLEILKNFEASGFQNQFYKTYFLTIEQEIFAVLTDTFHKPGF KLHVLVLQHLFYVVDSLTEPLWDSSSVPYQYTDNATFVRDYTIKLLGTSFPNMTVAEVTKFVDG LLSSKLDLPSFKNHIRDFLVQSKEFSAQDNKDLYAEEAAAQRERERQRMLAIPGLIAPSELQDE M(+) MSKKIREICGKKCGPRELATLVFVISSCNSLGAISPGMASIRWRSLSLWAAASSAYRSLLS*(- ) MMSLRQMVLLQRSCLIQAHCTFCRLLACPRKLEKSVGRSVVQGSSQHLCLSSRLAIR*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ma et al., 2021b |