Detailed infomation of each circRNA
| General Information | |
|---|---|
| CircRNA Name | Zm00001d012815_circ_g.2 |
| ID in PlantcircBase | zma_circ_008333 |
| Alias | zma_circ_0002221 |
| Organism | Zea mays |
| Position | chr5: 784149-786929 JBrowse» |
| Reference genome | AGPv4.38 |
| Type | ue-circRNA |
| Identification method | find_circ |
| Parent gene | Zm00001d012815 |
| Parent gene annotation |
Protein EXPORTIN 1A |
| Parent gene strand | + |
| Alternative splicing | NA |
| Support reads | NA |
| Tissues | leaf, root |
| Exon boundary | Yes-Yes |
| Splicing signals | GT-AG |
| Number of exons covered | Zm00001d012815_T010:10 Zm00001d012815_T003:10 Zm00001d012815_T002:10 Zm00001d012815_T024:10 Zm00001d012815_T030:10 Zm00001d012815_T019:10 Zm00001d012815_T033:10 Zm00001d012815_T026:10 Zm00001d012815_T025:10 Zm00001d012815_T012:10 Zm00001d012815_T013:10 Zm00001d012815_T011:10 Zm00001d012815_T036:10 Zm00001d012815_T035:10 Zm00001d012815_T020:10 Zm00001d012815_T005:10 Zm00001d012815_T038:10 Zm00001d012815_T015:10 Zm00001d012815_T037:10 Zm00001d012815_T004:10 Zm00001d012815_T007:10 Zm00001d012815_T022:9 Zm00001d012815_T008:10 |
| Conservation Information | |
|---|---|
| Conserved circRNAs | NA |
| PMCS | 0.055351981 |
| Functional Information | |
|---|---|
| Coding potential | Y |
| Potential coding position |
784219-786926(+) 784221-786419(-) 784626-786909(-) |
| Potential amino acid sequence |
MLTVYRMYSELVSSTIAEGGPFASRTSFVKLLRSVKRETLKLIETFVDKAEDLPHLGKQFVPPM MDPVLGDYARNVPDARESEVLSLFATIINKYKGEMLEDVPRIFEAVFQCTLEMITKNFEDYPEH RLKFFSLLRAIGTHCFQALIQLSSQQLKLVIDSINWAFRHTERNIAETGLSLLLEILKNFEASG FQNQFYKTYFLTIEQEIFAVLTDTFHKPGFKLHVLVLQHLFYVVDSLTEPLWDSSSVPYQYTDN ATFVRDYTIKLLGTSFPNMTVAEVTKFVDGLLSSKLDLPSFKNHIRDFLVQSKEFSAQDNKDLY AEEAAAQRERERQRMLAIPGLIAPSELQDEMTNTSVASSLGPHFFPQISLIFLDMLTVYRMYSE LVSSTIAEGGPFASRTSFVKLLRSVKRETLKLIETFVDKAEDLPHLGKQFVPPMMDPVLGDYAR NVPDARESEVLSLFATIINKYKGEMLEDVPRIFEAVFQCTLEMITKNFEDYPEHRLKFFSLLRA IGTHCFQALIQLSSQQLKLVIDSINWAFRHTERNIAETGLSLLLEILKNFEASGFQNQFYKTYF LTIEQEIFAVLTDTFHKPGFKLHVLVLQHLFYVVDSLTEPLWDSSSVPYQYTDNATFVRDYTIK LLGTSFPNMTVAEVTKFVDGLLSSKLDLPSFKNHIRDFLVQSKEFSAQDNKDLYAEEAAAQRER ERQRMLAIPGLIAPSELQDEMTNTSVASSLGPHFFPQISLIFLDMLTVYRMYSELVSSTIAEGG PFASRTSFVKLLRSVKRETLKLIETFVDKAEDLPHLGKQFVPPMMDPVLGDYARNVPDARESEV LSLFATIINKYKGEMLEDVPRIFEAVFQCTLEMITKNFEDYPEHRLKFFSLLRAIGTHCFQALI QLSSQQLKLVIDSINWAFRHTERNIAETGLSLLLEILKNFEASGFQNQFYKTYFLTIEQEIFAV LTDTFHKPGFKLHVLVLQHLFYVVDSLTEPLWDSSSVPYQYTDNATFVRDYTIKLLGTSFPNMT VAEVTKFVDGLLSSKLDLPSFKNHIRDFLVQSKEFSAQDNKDLYAEEAAAQRERERQRMLAIPG LIAPSELQDEMTNTSVASSLGPHFFPQISLIFLDMLTVYRMYSELVSSTIAEGGPFASRTSFVK LLRSVKRETLKLIETFVDKAEDLPHLGKQFVPPMMDPVLGDYARNVPDARESEVLSLFATIINK YKGEMLEDVPRIFEAVFQCTLEMITKNFEDYPEHRLKFFSLLRAIGTHCFQALIQLSSQQLKLV IDSINWAFRHTERNIAETGLSLLLEILKNFEASGFQNQFYKTYFLTIEQEIFAVLTDTFHKPGF KLHVLVLQHLFYVVDSLTEPLWDSSSVPYQYTDNATFVRDYTIKLLGTSFPNMTVAEVTKFVDG LLSSKLDLPSFKNHIRDFLVQSKEFSAQDNKDLYAEEAAAQRERERQRMLAIPGLIAPSELQDE M(+) MSKKIREICGKKCGPRELATLVFVISSCNSLGAISPGMASIRWRSLSLWAAASSAYRSLLS*(- ) MMSLRQMVLLQRSCLIQAHCTFCRLLACPRKLEKSVGRSVVQGSSQHLCLSSRLAIR*(-) |
| Sponge-miRNAs | NA |
| circRNA-miRNA-mRNA network | VISUALIZATION |
| Potential function description | NA |
| Other Information | |
|---|---|
| References | Ma et al., 2021b |