Plant Circular RNA Database

Detail information of Solyc12g019860.1_circ_g.4

			
						 General Information
					
						CircRNA Name
						Solyc12g019860.1_circ_g.4
					
						ID in PlantcircBase
						sly_circ_003581
					
						Alias
						12:12013390|12017393
					
						Organism
						
							Solanum lycopersicum						
					
						Position
						
							chr12: 12013390-12017393  JBrowse»						
					
						Reference genome
						
							SL2.50.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRI
					
						Parent gene
						
							Solyc12g019860.1						
					
						Parent gene annotation
						
							protein_coding
							
						Parent gene strand
						+
					
						Alternative splicing
						
							NA						
					
						Support reads
						6
					
						Tissues
						fruit
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Solyc12g019860.1.1:5

General Information
CircRNA Name	Solyc12g019860.1_circ_g.4
ID in PlantcircBase	sly_circ_003581
Alias	12:12013390\|12017393
Organism	Solanum lycopersicum
Position	chr12: 12013390-12017393 JBrowse»
Reference genome	SL2.50.38
Type	e-circRNA
Identification method	CIRI
Parent gene	Solyc12g019860.1
Parent gene annotation	protein_coding
Parent gene strand	+
Alternative splicing	NA
Support reads	6
Tissues	fruit
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Solyc12g019860.1.1:5

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							GCCTGAGGATTCTTCTGCCGATCCTTCTGTGAATGCTGGGCTCGGGAAAAATCTTTTGAATGAG
GATGATATGAAGGCTTCATATGGATTAGATACCCCAgtggctgtaacatctttagcacagcaag
ctgctagtgttcaggatcaatctgatgaagtagcatcacaggacagtagctctgaaatagttgt
tagaaccc

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 1062
Transcript exons: 12013390-12013558,12013655-12014124,12014646-12014813,12
015114-12015222,12017248-12017393
GTGGCTGTAACATCTTTAGCACAGCAAGCTGCTAGTGTTCAGGATCAATCTGATGAAGTAGCAT
CACAGGACAGTAGCTCTGAAATAGTTGTTAGAACCCCACCTCCTAAAAGTAGTGCAGTTGCTAC
TTCTGCTCCCACAACGCCTGCTGGGAGTCATGCAACCCAGGGTGCTGCTGCTTTATCTCCAACT
AGTATGTCAAATGCAATAAAAGAAGACGATCTGACAAGTTTTCCAGCTCGAAAGCCTTCCCCTG
CCCTTAGTGAAACTGCTTTAAGAGGTGTTAGTAGAGGTGCTCTATCTAACCAACCCGTGGCTAG
TATTGCACTTGGTTCTACTGGTTCAGTTACTGGCAATGGAGGTCTAGGAGCTATTCCATCTGCT
TCTGAAGTTACAAAGAGAAATATCTTAGTTTCAGAGGAGAGGCTTGGAAGTAGCAGCATGGGAC
AGCCTTTGGTATCCCCACTGGCTAACAGAATGATGATGTCACAAGCAGCTAAGGCTACAGATGG
AATTGGTGTTGCTGATGGGGCAAATCTCGGTGATGCTACGGTCATGACTGGTAGAGTATTCTCT
CCTTCTGTTGGTCCTGGTATGCAGTGGAGGCCTGGTAGTTCCTTTCAGAATCAAAATGAAGCGG
GACAATTCCGTGGAAGAACTGAAATTGCACCTGACCAGAGGGAGAAGTTTTTGCAAAAATTTCA
GCAAGTACAGCAAGGTCAGGGTAATCTTCTTGGCGTACCTCCATTTAGTGGTGGAAACCTTAAG
CAGTTCTCGTCCCAGCAACAGAATCCACTTTTGCCACAGTTCAATTCTCAAAGCTCCTCTGTCA
CTCCTCAACTTGGACTTGGAGTTGGGGCCCAAGCTGTTGGTATTAACAACATTGCCTCATCTGC
ATCTTTGCAGCAACAACCAGATGTAGGCCACTCAAAAGCTGAAGAGTTGCAGCAACAACAGATT
TTGCCTGAGGATTCTTCTGCCGATCCTTCTGTGAATGCTGGGCTCGGGAAAAATCTTTTGAATG
AGGATGATATGAAGGCTTCATATGGATTAGATACCCCA
						
					

						Genomic sequence
						
							GTGGCTGTAACATCTTTAGCACAGCAAGCTGCTAGTGTTCAGGATCAATCTGATGAAGTAGCAT
CACAGGACAGTAGCTCTGAAATAGTTGTTAGAACCCCACCTCCTAAAAGTAGTGCAGTTGCTAC
TTCTGCTCCCACAACGCCTGCTGGGAGTCATGCAACCCAGGGTACGAACCATGCTTCTACTCAA
AAGATTCTGATACATCAACGAGTTTGTTTATTTGTCTGCTGAACTTCTGGATGTGTTTTTTTGG
AATATGCAGGTGCTGCTGCTTTATCTCCAACTAGTATGTCAAATGCAATAAAAGAAGACGATCT
GACAAGTTTTCCAGCTCGAAAGCCTTCCCCTGCCCTTAGTGAAACTGCTTTAAGAGGTGTTAGT
AGAGGTGCTCTATCTAACCAACCCGTGGCTAGTATTGCACTTGGTTCTACTGGTTCAGTTACTG
GCAATGGAGGTCTAGGAGCTATTCCATCTGCTTCTGAAGTTACAAAGAGAAATATCTTAGTTTC
AGAGGAGAGGCTTGGAAGTAGCAGCATGGGACAGCCTTTGGTATCCCCACTGGCTAACAGAATG
ATGATGTCACAAGCAGCTAAGGCTACAGATGGAATTGGTGTTGCTGATGGGGCAAATCTCGGTG
ATGCTACGGTCATGACTGGTAGAGTATTCTCTCCTTCTGTTGGTCCTGGTATGCAGTGGAGGCC
TGGTAGTTCCTTTCAGAATCAAAATGAAGCGGTATGTTTCTATTTTATCATTTATGCGAGCTCT
GTGATCACCACTTCAATTTGTACCTGATTATGTGCTATCACATTCTGTAAGTTCAAAATAAAAT
TAATTAGCCTCTCAAATATGTTTTTAAATGCTGACATATGCTTAAAAACTGTTCAAACCTGACT
ATCTTCTTTACTAGTTGAAAAATGCTTTCATTCTATATCTTTATTCTTATGCAATTGAAATACT
TGTATTTTAAAACTATGAGCGCCTCATCCATGTTGAAATATAATTCTTTTTGCCTAAATTGATG
CGGGGTGCTGCAGCCTGTCACGAAGACAATCTGTCTCAATATATGCACTGCTTTAAGAATTCAG
AAGGATATTTGTTTCCTTTTTGTTTTGATAACATACTTTGGGGTGTGTGTGCTATTACTGTGAT
TTAATCTTTTCCTTGGGTTTCTACCTTTTTTTCCTAGACTATATTATGTATTCAACTGCTTCAA
TAGGTATTGTTCAATGTCAATTTGTTTCTTGGGATTTCAGGGACAATTCCGTGGAAGAACTGAA
ATTGCACCTGACCAGAGGGAGAAGTTTTTGCAAAAATTTCAGCAAGTACAGCAAGGTCAGGGTA
ATCTTCTTGGCGTACCTCCATTTAGTGGTGGAAACCTTAAGCAGTTCTCGTCCCAGCAACAGAA
TCCACTTTTGCCACAGGTGTTTTTAATGGTTTTGCATGATATTTGAGTTAGTTGGATTGCCTTG
TTTCCCTTAATTACATGATCTTTTGTTACTACAATGCCATATTTTTCTTAAAACTTTTAGCACA
CCCTTTTTTCACTGTGCACCTCTGTCGTCGACTCCCTTGTTCTTTTTGTGAACTTTTTCTTTGT
TAAGGGTCGGTACTTTTAATTAATATAATGATGTCTGAATCTGAATGCATATTAGTAAGATGGA
TGTGTTTGGATTGCTGGACGCTTGGTTTTTATGTGCTCTTACCTGATTCTATTGTTTCAGTTCA
ATTCTCAAAGCTCCTCTGTCACTCCTCAACTTGGACTTGGAGTTGGGGCCCAAGCTGTTGGTAT
TAACAACATTGCCTCATCTGCATCTTTGCAGCAACAACCAGGTTTGAGTGCACAACTTTTGGCG
TCAATTTCTGTCATATGATTGCCTTCTGTATTGAGCCCGTTTGGTCTGGGCTGAGTTGTAACAA
AATTTAATTTCTGAGGCTTGTCGTGTTGTTGGTTTTATTCGTTTCCTGCTTCTTTATAAAAAAC
AAGAGGTCTTCCCTTTTTTATATGTGTAAATTTAAATTGATTTATTCTTTAATTGGTTTTAGAT
AAGTAATCTTTTATCTTGTATTTGCTTTGGTCGTCTCAAAGATGATGAAAGTCATGCAGGAAGT
CCATCTTTGTACCTACTGTTTCTTTTTCTCTGCCTTCCATTTTGAATTCTTTATTTTGTTCTTT
TCTTCTTCCAGTTTGATATTTGCTGTCATCTTTTCCTACCTTCTTTATAATAAGAAAACACACT
AGTATTAGTTTATCAAGTAACAATTTTTCTTTTTATAAACCTCTTAATATGTTTCTTGGAGAAA
GGGAAGTGAGCGATGATAGTAACATGGAGAATACATGTGAAGATTGCTTTTAGTCTGATTTTCT
TGAAGGTTCTTATTTATAGAGATTTGACACGTCTTGAGATTTTCATTATGTTGTTAGTTGCCAA
GAGTGGATATATGGATATAAATAGTTGTGCCGTTACTTATTATCAATACTAGAAAATCTGTTAA
AGTCGATGTATGCACATGTTCGTATGTTAAAACGCCAATGTTCACGTTGAATAAATTGCTGAAA
TTTAAGTGAATGAAATGTCTTTTTGAGGGATACTGATATAAACACTAGTTAATTCAAATTCCAC
CTGCTATTTGGATCGAGACATGAAGTTCTCAAGATAAACACCAGTTGATCTTCATATCATCAAA
GCAACTTGCGCGATGTGTAGTGGATTAGATAACATTGCTACCTCCACCTTACCTATTGGCTGAC
AATGCCACCAGATCTTGCACTGAGATGATTGATTTGCTTATTTTCTTTTCCTTTTTTCTCTGGT
TCTTAAATCCCGGTCCAATGATTTTTGTTGTTTCTGGGTGGGAGGGGAAGGGGTGGTTGGTGGG
AGGGGAAGGGGTGGTTGGTGAGCTGGGGAAGTTGGGTAGGAGAAAGGAGATGGAAAAGATGGTC
TCTAGGGAAACATTTATTGTCACTGAGGCGATGGGAATGCTAGGGCTTGCATTTGCTAGTTACT
TGTGTGTGTGTTTCTTTTTAAAAAATATATAATGTTAGTTACTTGAGTTTGTCTCTAGGAAGAT
ATTTGATGTCTCTTTGAAGATGGGAATGCTAGGGCTTGCATTTGCTAGTTACTTGAGATGGTGT
ACTTTAATAAGATAATATTAGTTGCCCTCCGTTTCAATTTGTTTGATATACTTCCTTTTTTAGT
CTGTTTAGAAAAGGACTCTTTACCTTTTTGTTTGACATACTTCCATTTTCGTCCGTTTAAAAAA
GAACGACTCTTTCCTTTTTTAGCAGCTTTTTAATTCCAACTTTCCACATTACATGTTTAAGACC
ACAAGAGTAAAGGACATTTTGGTACGTTTGACATACATTTAATCTAAGACCACAAGATGCAAAA
GTCTTCTTTATTTTCCTTAACTACGTGCCAAGTCAAATTAGGCCAAACAAATCGAAGTGGATGG
AATATTAGATTTGTTGTCCAATTCTTTTGCTTTGCCAGTTAGGAGAATAATATAATTGTTACTT
TTGGATGAAGTAGGAGAGGTGGACTGTAATTTCTTCACCATCAATTGACTGATTGACAGTTGCA
GAGCCCTAGGAATGGGACTGTGTGGAGGGAGGAGATGATCGAAGTGGTCTATTTTCTTGAAAAT
TGTAGTTGGAGTGGAGTGAGGTTACTAATAAAAGGAAATCGCTTAACTTGTAATGGTGATATCT
GTACCTAATGGACAACTGAAAATAATCAAAGAAAAAGTTGCATCTTCTGTGGCATTTGAAGCAA
AAGATAGTTCTATAATGTTCTTTGATACATGATTCATGAACGCTTAAAATGCTTTTATAAATAC
ACTATACAATGGTCGCAGATGTAGGCCACTCAAAAGCTGAAGAGTTGCAGCAACAACAGATTTT
GCCTGAGGATTCTTCTGCCGATCCTTCTGTGAATGCTGGGCTCGGGAAAAATCTTTTGAATGAG
GATGATATGAAGGCTTCATATGGATTAGATACCCCA
						
					

			
		

Sequences
Splice junction sequence	GCCTGAGGATTCTTCTGCCGATCCTTCTGTGAATGCTGGGCTCGGGAAAAATCTTTTGAATGAG GATGATATGAAGGCTTCATATGGATTAGATACCCCAgtggctgtaacatctttagcacagcaag ctgctagtgttcaggatcaatctgatgaagtagcatcacaggacagtagctctgaaatagttgt tagaaccc
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 1062 Transcript exons: 12013390-12013558,12013655-12014124,12014646-12014813,12 015114-12015222,12017248-12017393 GTGGCTGTAACATCTTTAGCACAGCAAGCTGCTAGTGTTCAGGATCAATCTGATGAAGTAGCAT CACAGGACAGTAGCTCTGAAATAGTTGTTAGAACCCCACCTCCTAAAAGTAGTGCAGTTGCTAC TTCTGCTCCCACAACGCCTGCTGGGAGTCATGCAACCCAGGGTGCTGCTGCTTTATCTCCAACT AGTATGTCAAATGCAATAAAAGAAGACGATCTGACAAGTTTTCCAGCTCGAAAGCCTTCCCCTG CCCTTAGTGAAACTGCTTTAAGAGGTGTTAGTAGAGGTGCTCTATCTAACCAACCCGTGGCTAG TATTGCACTTGGTTCTACTGGTTCAGTTACTGGCAATGGAGGTCTAGGAGCTATTCCATCTGCT TCTGAAGTTACAAAGAGAAATATCTTAGTTTCAGAGGAGAGGCTTGGAAGTAGCAGCATGGGAC AGCCTTTGGTATCCCCACTGGCTAACAGAATGATGATGTCACAAGCAGCTAAGGCTACAGATGG AATTGGTGTTGCTGATGGGGCAAATCTCGGTGATGCTACGGTCATGACTGGTAGAGTATTCTCT CCTTCTGTTGGTCCTGGTATGCAGTGGAGGCCTGGTAGTTCCTTTCAGAATCAAAATGAAGCGG GACAATTCCGTGGAAGAACTGAAATTGCACCTGACCAGAGGGAGAAGTTTTTGCAAAAATTTCA GCAAGTACAGCAAGGTCAGGGTAATCTTCTTGGCGTACCTCCATTTAGTGGTGGAAACCTTAAG CAGTTCTCGTCCCAGCAACAGAATCCACTTTTGCCACAGTTCAATTCTCAAAGCTCCTCTGTCA CTCCTCAACTTGGACTTGGAGTTGGGGCCCAAGCTGTTGGTATTAACAACATTGCCTCATCTGC ATCTTTGCAGCAACAACCAGATGTAGGCCACTCAAAAGCTGAAGAGTTGCAGCAACAACAGATT TTGCCTGAGGATTCTTCTGCCGATCCTTCTGTGAATGCTGGGCTCGGGAAAAATCTTTTGAATG AGGATGATATGAAGGCTTCATATGGATTAGATACCCCA
Genomic sequence	GTGGCTGTAACATCTTTAGCACAGCAAGCTGCTAGTGTTCAGGATCAATCTGATGAAGTAGCAT CACAGGACAGTAGCTCTGAAATAGTTGTTAGAACCCCACCTCCTAAAAGTAGTGCAGTTGCTAC TTCTGCTCCCACAACGCCTGCTGGGAGTCATGCAACCCAGGGTACGAACCATGCTTCTACTCAA AAGATTCTGATACATCAACGAGTTTGTTTATTTGTCTGCTGAACTTCTGGATGTGTTTTTTTGG AATATGCAGGTGCTGCTGCTTTATCTCCAACTAGTATGTCAAATGCAATAAAAGAAGACGATCT GACAAGTTTTCCAGCTCGAAAGCCTTCCCCTGCCCTTAGTGAAACTGCTTTAAGAGGTGTTAGT AGAGGTGCTCTATCTAACCAACCCGTGGCTAGTATTGCACTTGGTTCTACTGGTTCAGTTACTG GCAATGGAGGTCTAGGAGCTATTCCATCTGCTTCTGAAGTTACAAAGAGAAATATCTTAGTTTC AGAGGAGAGGCTTGGAAGTAGCAGCATGGGACAGCCTTTGGTATCCCCACTGGCTAACAGAATG ATGATGTCACAAGCAGCTAAGGCTACAGATGGAATTGGTGTTGCTGATGGGGCAAATCTCGGTG ATGCTACGGTCATGACTGGTAGAGTATTCTCTCCTTCTGTTGGTCCTGGTATGCAGTGGAGGCC TGGTAGTTCCTTTCAGAATCAAAATGAAGCGGTATGTTTCTATTTTATCATTTATGCGAGCTCT GTGATCACCACTTCAATTTGTACCTGATTATGTGCTATCACATTCTGTAAGTTCAAAATAAAAT TAATTAGCCTCTCAAATATGTTTTTAAATGCTGACATATGCTTAAAAACTGTTCAAACCTGACT ATCTTCTTTACTAGTTGAAAAATGCTTTCATTCTATATCTTTATTCTTATGCAATTGAAATACT TGTATTTTAAAACTATGAGCGCCTCATCCATGTTGAAATATAATTCTTTTTGCCTAAATTGATG CGGGGTGCTGCAGCCTGTCACGAAGACAATCTGTCTCAATATATGCACTGCTTTAAGAATTCAG AAGGATATTTGTTTCCTTTTTGTTTTGATAACATACTTTGGGGTGTGTGTGCTATTACTGTGAT TTAATCTTTTCCTTGGGTTTCTACCTTTTTTTCCTAGACTATATTATGTATTCAACTGCTTCAA TAGGTATTGTTCAATGTCAATTTGTTTCTTGGGATTTCAGGGACAATTCCGTGGAAGAACTGAA ATTGCACCTGACCAGAGGGAGAAGTTTTTGCAAAAATTTCAGCAAGTACAGCAAGGTCAGGGTA ATCTTCTTGGCGTACCTCCATTTAGTGGTGGAAACCTTAAGCAGTTCTCGTCCCAGCAACAGAA TCCACTTTTGCCACAGGTGTTTTTAATGGTTTTGCATGATATTTGAGTTAGTTGGATTGCCTTG TTTCCCTTAATTACATGATCTTTTGTTACTACAATGCCATATTTTTCTTAAAACTTTTAGCACA CCCTTTTTTCACTGTGCACCTCTGTCGTCGACTCCCTTGTTCTTTTTGTGAACTTTTTCTTTGT TAAGGGTCGGTACTTTTAATTAATATAATGATGTCTGAATCTGAATGCATATTAGTAAGATGGA TGTGTTTGGATTGCTGGACGCTTGGTTTTTATGTGCTCTTACCTGATTCTATTGTTTCAGTTCA ATTCTCAAAGCTCCTCTGTCACTCCTCAACTTGGACTTGGAGTTGGGGCCCAAGCTGTTGGTAT TAACAACATTGCCTCATCTGCATCTTTGCAGCAACAACCAGGTTTGAGTGCACAACTTTTGGCG TCAATTTCTGTCATATGATTGCCTTCTGTATTGAGCCCGTTTGGTCTGGGCTGAGTTGTAACAA AATTTAATTTCTGAGGCTTGTCGTGTTGTTGGTTTTATTCGTTTCCTGCTTCTTTATAAAAAAC AAGAGGTCTTCCCTTTTTTATATGTGTAAATTTAAATTGATTTATTCTTTAATTGGTTTTAGAT AAGTAATCTTTTATCTTGTATTTGCTTTGGTCGTCTCAAAGATGATGAAAGTCATGCAGGAAGT CCATCTTTGTACCTACTGTTTCTTTTTCTCTGCCTTCCATTTTGAATTCTTTATTTTGTTCTTT TCTTCTTCCAGTTTGATATTTGCTGTCATCTTTTCCTACCTTCTTTATAATAAGAAAACACACT AGTATTAGTTTATCAAGTAACAATTTTTCTTTTTATAAACCTCTTAATATGTTTCTTGGAGAAA GGGAAGTGAGCGATGATAGTAACATGGAGAATACATGTGAAGATTGCTTTTAGTCTGATTTTCT TGAAGGTTCTTATTTATAGAGATTTGACACGTCTTGAGATTTTCATTATGTTGTTAGTTGCCAA GAGTGGATATATGGATATAAATAGTTGTGCCGTTACTTATTATCAATACTAGAAAATCTGTTAA AGTCGATGTATGCACATGTTCGTATGTTAAAACGCCAATGTTCACGTTGAATAAATTGCTGAAA TTTAAGTGAATGAAATGTCTTTTTGAGGGATACTGATATAAACACTAGTTAATTCAAATTCCAC CTGCTATTTGGATCGAGACATGAAGTTCTCAAGATAAACACCAGTTGATCTTCATATCATCAAA GCAACTTGCGCGATGTGTAGTGGATTAGATAACATTGCTACCTCCACCTTACCTATTGGCTGAC AATGCCACCAGATCTTGCACTGAGATGATTGATTTGCTTATTTTCTTTTCCTTTTTTCTCTGGT TCTTAAATCCCGGTCCAATGATTTTTGTTGTTTCTGGGTGGGAGGGGAAGGGGTGGTTGGTGGG AGGGGAAGGGGTGGTTGGTGAGCTGGGGAAGTTGGGTAGGAGAAAGGAGATGGAAAAGATGGTC TCTAGGGAAACATTTATTGTCACTGAGGCGATGGGAATGCTAGGGCTTGCATTTGCTAGTTACT TGTGTGTGTGTTTCTTTTTAAAAAATATATAATGTTAGTTACTTGAGTTTGTCTCTAGGAAGAT ATTTGATGTCTCTTTGAAGATGGGAATGCTAGGGCTTGCATTTGCTAGTTACTTGAGATGGTGT ACTTTAATAAGATAATATTAGTTGCCCTCCGTTTCAATTTGTTTGATATACTTCCTTTTTTAGT CTGTTTAGAAAAGGACTCTTTACCTTTTTGTTTGACATACTTCCATTTTCGTCCGTTTAAAAAA GAACGACTCTTTCCTTTTTTAGCAGCTTTTTAATTCCAACTTTCCACATTACATGTTTAAGACC ACAAGAGTAAAGGACATTTTGGTACGTTTGACATACATTTAATCTAAGACCACAAGATGCAAAA GTCTTCTTTATTTTCCTTAACTACGTGCCAAGTCAAATTAGGCCAAACAAATCGAAGTGGATGG AATATTAGATTTGTTGTCCAATTCTTTTGCTTTGCCAGTTAGGAGAATAATATAATTGTTACTT TTGGATGAAGTAGGAGAGGTGGACTGTAATTTCTTCACCATCAATTGACTGATTGACAGTTGCA GAGCCCTAGGAATGGGACTGTGTGGAGGGAGGAGATGATCGAAGTGGTCTATTTTCTTGAAAAT TGTAGTTGGAGTGGAGTGAGGTTACTAATAAAAGGAAATCGCTTAACTTGTAATGGTGATATCT GTACCTAATGGACAACTGAAAATAATCAAAGAAAAAGTTGCATCTTCTGTGGCATTTGAAGCAA AAGATAGTTCTATAATGTTCTTTGATACATGATTCATGAACGCTTAAAATGCTTTTATAAATAC ACTATACAATGGTCGCAGATGTAGGCCACTCAAAAGCTGAAGAGTTGCAGCAACAACAGATTTT GCCTGAGGATTCTTCTGCCGATCCTTCTGTGAATGCTGGGCTCGGGAAAAATCTTTTGAATGAG GATGATATGAAGGCTTCATATGGATTAGATACCCCA

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.302826406

Conservation Information
Conserved circRNAs	NA
PMCS	0.302826406

			
				
						 Functional Information
					

				
						Coding potential
						Y
					

						Potential coding position
						
							12013682-12017390(+)
12013404-12015183(-)
						
					

						Potential amino acid sequence
						
							MSNAIKEDDLTSFPARKPSPALSETALRGVSRGALSNQPVASIALGSTGSVTGNGGLGAIPSAS
EVTKRNILVSEERLGSSSMGQPLVSPLANRMMMSQAAKATDGIGVADGANLGDATVMTGRVFSP
SVGPGMQWRPGSSFQNQNEAGQFRGRTEIAPDQREKFLQKFQQVQQGQGNLLGVPPFSGGNLKQ
FSSQQQNPLLPQFNSQSSSVTPQLGLGVGAQAVGINNIASSASLQQQPDVGHSKAEELQQQQIL
PEDSSADPSVNAGLGKNLLNEDDMKASYGLDTPVAVTSLAQQAASVQDQSDEVASQDSSSEIVV
RTPPPKSSAVATSAPTTPAGSHATQGAAALSPTSMSNAIKEDDLTSFPARKPSPALSETALRGV
SRGALSNQPVASIALGSTGSVTGNGGLGAIPSASEVTKRNILVSEERLGSSSMGQPLVSPLANR
MMMSQAAKATDGIGVADGANLGDATVMTGRVFSPSVGPGMQWRPGSSFQNQNEAGQFRGRTEIA
PDQREKFLQKFQQVQQGQGNLLGVPPFSGGNLKQFSSQQQNPLLPQFNSQSSSVTPQLGLGVGA
QAVGINNIASSASLQQQPDVGHSKAEELQQQQILPEDSSADPSVNAGLGKNLLNEDDMKASYGL
DTPVAVTSLAQQAASVQDQSDEVASQDSSSEIVVRTPPPKSSAVATSAPTTPAGSHATQGAAAL
SPTSMSNAIKEDDLTSFPARKPSPALSETALRGVSRGALSNQPVASIALGSTGSVTGNGGLGAI
PSASEVTKRNILVSEERLGSSSMGQPLVSPLANRMMMSQAAKATDGIGVADGANLGDATVMTGR
VFSPSVGPGMQWRPGSSFQNQNEAGQFRGRTEIAPDQREKFLQKFQQVQQGQGNLLGVPPFSGG
NLKQFSSQQQNPLLPQFNSQSSSVTPQLGLGVGAQAVGINNIASSASLQQQPDVGHSKAEELQQ
QQILPEDSSADPSVNAGLGKNLLNEDDMKASYGLDTPVAVTSLAQQAASVQDQSDEVASQDSSS
EIVVRTPPPKSSAVATSAPTTPAGSHATQGAAALSPTSMSNAIKEDDLTSFPARKPSPALSETA
LRGVSRGALSNQPVASIALGSTGSVTGNGGLGAIPSASEVTKRNILVSEERLGSSSMGQPLVSP
LANRMMMSQAAKATDGIGVADGANLGDATVMTGRVFSPSVGPGMQWRPGSSFQNQNEAGQFRGR
TEIAPDQREKFLQKFQQVQQGQGNLLGVPPFSGGNLKQFSSQQQNPLLPQFNSQSSSVTPQLGL
GVGAQAVGINNIASSASLQQQPDVGHSKAEELQQQQILPEDSSADPSVNAGLGKNLLNEDDMKA
SYGLDTP(+)
MLQPLGYLIHMKPSYHPHSKDFSRAQHSQKDRQKNPQAKSVVAATLQLLSGLHLVVAAKMQMRQ
CC*(-)
						
					

						Sponge-miRNAs
						
							NA						
					

						circRNA-miRNA-mRNA network
						 VISUALIZATION
					

						Potential function description
						fruit ripening
					

			
		

Functional Information
Coding potential	Y
Potential coding position	12013682-12017390(+) 12013404-12015183(-)
Potential amino acid sequence	MSNAIKEDDLTSFPARKPSPALSETALRGVSRGALSNQPVASIALGSTGSVTGNGGLGAIPSAS EVTKRNILVSEERLGSSSMGQPLVSPLANRMMMSQAAKATDGIGVADGANLGDATVMTGRVFSP SVGPGMQWRPGSSFQNQNEAGQFRGRTEIAPDQREKFLQKFQQVQQGQGNLLGVPPFSGGNLKQ FSSQQQNPLLPQFNSQSSSVTPQLGLGVGAQAVGINNIASSASLQQQPDVGHSKAEELQQQQIL PEDSSADPSVNAGLGKNLLNEDDMKASYGLDTPVAVTSLAQQAASVQDQSDEVASQDSSSEIVV RTPPPKSSAVATSAPTTPAGSHATQGAAALSPTSMSNAIKEDDLTSFPARKPSPALSETALRGV SRGALSNQPVASIALGSTGSVTGNGGLGAIPSASEVTKRNILVSEERLGSSSMGQPLVSPLANR MMMSQAAKATDGIGVADGANLGDATVMTGRVFSPSVGPGMQWRPGSSFQNQNEAGQFRGRTEIA PDQREKFLQKFQQVQQGQGNLLGVPPFSGGNLKQFSSQQQNPLLPQFNSQSSSVTPQLGLGVGA QAVGINNIASSASLQQQPDVGHSKAEELQQQQILPEDSSADPSVNAGLGKNLLNEDDMKASYGL DTPVAVTSLAQQAASVQDQSDEVASQDSSSEIVVRTPPPKSSAVATSAPTTPAGSHATQGAAAL SPTSMSNAIKEDDLTSFPARKPSPALSETALRGVSRGALSNQPVASIALGSTGSVTGNGGLGAI PSASEVTKRNILVSEERLGSSSMGQPLVSPLANRMMMSQAAKATDGIGVADGANLGDATVMTGR VFSPSVGPGMQWRPGSSFQNQNEAGQFRGRTEIAPDQREKFLQKFQQVQQGQGNLLGVPPFSGG NLKQFSSQQQNPLLPQFNSQSSSVTPQLGLGVGAQAVGINNIASSASLQQQPDVGHSKAEELQQ QQILPEDSSADPSVNAGLGKNLLNEDDMKASYGLDTPVAVTSLAQQAASVQDQSDEVASQDSSS EIVVRTPPPKSSAVATSAPTTPAGSHATQGAAALSPTSMSNAIKEDDLTSFPARKPSPALSETA LRGVSRGALSNQPVASIALGSTGSVTGNGGLGAIPSASEVTKRNILVSEERLGSSSMGQPLVSP LANRMMMSQAAKATDGIGVADGANLGDATVMTGRVFSPSVGPGMQWRPGSSFQNQNEAGQFRGR TEIAPDQREKFLQKFQQVQQGQGNLLGVPPFSGGNLKQFSSQQQNPLLPQFNSQSSSVTPQLGL GVGAQAVGINNIASSASLQQQPDVGHSKAEELQQQQILPEDSSADPSVNAGLGKNLLNEDDMKA SYGLDTP(+) MLQPLGYLIHMKPSYHPHSKDFSRAQHSQKDRQKNPQAKSVVAATLQLLSGLHLVVAAKMQMRQ CC*(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	fruit ripening

			
						 Other Information
					
						References
						Yin et al., 2018

circRNA

Detail information of Solyc12g019860.1_circ_g.4

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