Detail information of Solyc04g051310.2_circ_g.1


General Information
CircRNA Name Solyc04g051310.2_circ_g.1
ID in PlantcircBase sly_circ_001413
Alias NA
Organism Solanum lycopersicum
Position chr4: 50316493-50321287  JBrowse»
Reference genome SL2.50.38
Type   ei-circRNA
Identification method CIRI; find_circ
Parent gene Solyc04g051310.2
Parent gene annotation protein_coding
Parent gene strand +
Alternative splicing Solyc04g051310.2_circ_g.2
Support reads NA
Tissues leaf
Exon boundary   No-Yes
Splicing signals   GT-AA
Number of exons covered Solyc04g051310.2.1:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AATCCTGAAGACATAGTTGCTCCAGATGTAGAGAATGCTCTTCAGGCTCCAGCTTTTCCTGCAG
CTAATGACATAACTGTTCCGCCTCCGCCCCTTTTAAgagtgcagtaagcttccttgcagatgtt
ggtggcctttattgcgttagtattggcctcttcttctacattttggtgcaggtacattcatttt
ttcattct
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GAGTGCAGTAAGCTTCCTTGCAGATGTTGGTGGCCTTTATTGCGTTAGTATTGGCCTCTTCTTC
TACATTTTGGTGCAGGTACATTCATTTTTTCATTCTTTTTGTTGCTACTACCGTATTTTATGGA
TTTTCATTTGTAATCTATGTTACACTGCATAACTTCATCTTACTGAGAACATGACTCTAGATAG
GAAGGAGTTGGGATTGCGTATTAGGGTATAAGGTTAGAGGGGTACACTGTTGTCTTGCCTTGCG
GAGGTTTAGGCTTGTTAGTGCCTGTCGTAATACTAGTCGTACTCTTGTTGTTCTGGACATATGT
TGTTTATTGTGTTTCAATTGTCACACTATTTTGTTCTTTCCGGTAGACTTTACACCGTGTTTCT
AGACTTTACACCATGTTTCTTATTAGCTGCTATGCTTTTCTTCATTGTTTTCTTCTTCTTTTAT
TTGTGTTTGGTGCACTTGAGCTGAGGGTCTTACGCGAATAACCTCTCTACCTCCATGAGGTAGT
GGTAAGGTATGCGTACACTCTACCCTCCTCAGACCCCACTTGGTGGATTTCATTGGGTATGTTG
TTCAGTTGTTGTTACATGGACTTGTTTACGTTGTGCATCCTGTACCGGGTGTATGTTTACTACC
CTGTAAAGTGCATTTTTTTTTGTCAATTCTTAGTATATTATGAATAATCTGCATAAAGCACCCA
TACTCATGTCACACCCGTTTGGCACAGTAGTCAGGCAAATGAAGTATCCGTGTAACATAGTTGT
GTGGTTGAGAACAATGCGTTAACCAAAAGGAGACTTCAATGACAATTTTTCTGTTGAAATTTGC
TGTAACAATAGTTGTTTGTAGTTTAGGTACTGATAGTAATGCATGGGGCTTCTCGAGTTAGGCA
TGTCCGCTGGTTAAATCTTGGACATGGATCTCTTACGGTTTCTGCTTTTATGTGAGTTGGTAGG
ATTTGCATTTTACAGCTACTAGTTGCAGAAACTTACTGGAGCTTGATTTCTTGACAGTTTCCAT
TCAGTTTTCTATGTTTGTGGAGGAAAGTTTGTCTTTTGAGATACCTCTCAAATCTGCTCAGTGC
TAATTTTTGTCTTTTGAGATACCTCTCAAATCTGCTCAGTGCTAATTTCTTTATGAAGCATCAA
ATAAGAAAAGAAAAACAAAGTTGGGCAAAGTTTTTTATCTGACACTTGATTTTTTGTGTATCAT
TTCTACTCCTATCAACCAAAACGTTCAAGATTAAGAAATTTTGTTCCGATGTACATAGTTATTT
ACCTCTAGATTGGAATGTGGGTCAGACATTAAGATTGATCTGGTGTCTGAACTTAGTAGTGATG
GAAGAAAGGGACTCTGAAGATACTTGAAATTGTAAAAATGTATGAAGTAAATTTAGAGTGTTTA
CTTCTTTTCATGGAAAATTTAGAGTGATAGATCCTTATGTCTATACTTTCTTATTTTTGTCGAT
ATTCCTATGTTACAGTGTGAATATAGGATAAAGAAATTGCGCAATGAGGATAGTGTGATGCGAA
AGGTTAGAAGTCGCCGAAAAGCTCAAGACCGCTGGGATAAAGTGAGTTTATGGACAAAAAAATC
ACGTGTTGTCTTGCTTAACACAATCTTTTTAAGTTAGCTTTGCCAATTCAGCTACCCTGTCTAA
CTTCCTTATCCCTTGCTTCCACTTTATTTTTCTGATAGTTGAGGAAATATGTGATGTACACGTA
CGCTCCTAACCAATTGGAAGAGGAGTATGACATGAGAAATGATGGTTGTTGCACAGGCGTCAAG
ATGGAATCACTCCAAAAAAAGAGCTCTTCAGTTAGAGGAAAAGGGTCTAGCAGATTAGATACTA
TCAGTTTTAGCAGAAAAGTTGGCTTACCTAGTGAGAAGGTGCAGCCTTGCGGCATCAATTCCTT
TATATCAGTATGCTTACATCTACTACTTATTTACAAATTTCATGGAGATCGTTAACTTTTGAAG
TTTTGTTTGCCTTCCCCAGAGGGCCATTCCAGAGAAGATTGATACTCAAAGTGCGACATATATT
TTGCCTGTATCTGCAACAGATCTCCAAAAGAATACACATCTGAAGGAAAAAAGAGTCAGTTGCT
ATTTCTCTCTGATATTTTTGTTTCTTGAATTTGCTTAAATAATATTTATATTTTGGCTACTGTC
TCAACGGATCCCATTAACCTCATGATTGGTCCCATTATGCCCTCTCTTTTACCATGATTCGGAC
TTAACCCAATATAGCAAAACAGATATCTAAATGGTGTACATGGATGATTTAGCTCTTCTTTTTT
AACAATACCCCTTTCTTGTTTTGATGTTTGGAAAAGACCAAGGGTGTCACAACTACTTTCCCCG
GTTTCATGATTTTTGCTGTTATATAAGACGTATCAGAAATGAATGCTTTACTTTTTAGAACTTC
CAAAATATCTTTGCTTCGATTGGGAACTACCTATTAGTAGGTAGTTTACTTTTTTTTGGGGGAT
GGGGGTGGGGTGTTATAATCCTCTCTGATATGGATCTGGTTATAGGGTTCTGTGGTGTGAAACC
GAATGTTTTCTTCCTACGACCTATGGCGTTGGTTCATTAGAGAGAACCTGCAATCTCTTGAGTT
TGAAGTACTTAAAGACTTGGTAATTTTCTGCTTCCATTTCCTAAGACACAAAGATAGTTTAAAT
ACAACACTTAAAAAATAACTACCCATAGAAACTAGGACATGACTTCCTAACTTAACTAGAATGT
AGAACTGCACAATTACATGAAAATAACTGTACTATTGCAGTAAAATAACTACCACTAAAAAGAA
ATTGCTGCTGTAACTATTGGATAACTAAGGAGTGATAACATTACTCTCCTCCTTCAAATCCCGC
TTGTCCTCAAGCGCTAAGTGCGGAAATTAGTATTTCCTTCCTTTCCAGCAAACTCTTCCTCATC
ATCTATAAAGTCAATCCAGAATAATTTCTTGCATTGATGATCTCGGGTGAATGGTTCATCACAA
TTGGAACAAAGTTCCTTAAGTCGCCTTTCCTCCATTTCAGATCTGGTTAGTTTCTTCACAAATC
TGGCATGTTGTTGCGGTGAGAAATTTGCCGTCTTGGATTTGCAAGCATCTAACGATTGCGAATA
AACGGATTGTTCCTTGCGTTCATAAAGTTGGGATAAACTCATCGTTGTAGCCAAATCTGGGAGA
TTATGCAACTCAACCTCAATTTCTATATAATCAGCAAGACAACTGATATAAAGTTCAATTTTTT
TGCGATTGTGTGTACCAGCCCGCGAAACTAACTGCTTAAACTTTCCTTGGTAATTTGCCACAGA
ATCGATTTGGCATAACTTAGCCAATTCTCCCAATTTCTGACTTCTGGTTGGTGGCCCGAAATGA
AGATTACAATAACGTTTAAATTCATCCCAAGACGGTTCAGGCATATCTGTCTCTAAGTGAAGAA
ACCAAAGTTGTGCATTCCCCTCCAAATGAAAAGAAGCAAGTCCGACTTTTTCTTCATCTGGAGT
CTGTTGGTGTCGAAAGAAGTGGTCACATCTGTTCAGCCATCCCAAAGGGGTCCTTTTGTCCAGT
AAATCGTTGAAAATCCAACTGTGTATACCTAGGAATGATTGAACTTCCTCCTGCATCTGATTTT
TGCATCTGATTATAACCCTCCTGCCACTCCACTTTTAACCTTCCAACCCCGATTCTGACTGGTA
TGTCTCGTTGATTCAGCATCAACCTTCGAATTCGCTAGATCCGTTGAGTGCATCTAAGCGAGCA
TTTATTGCTTCGTGCCTCGCTATATTGGCTGCACGTTATTCTTGAAATAAGTTCACCAATTGTG
CCAGTTGATGTTGAATTTGATCTCCTTTAACACCCATCTCTGATACCAAGTTGTTATAGTCCCC
TGATATGGATCTGGTTATGGGGCACTGTAGTGTGAAATCGAATGTTTTGGCGCTGGTTCGTTAG
AGAAAACCTGCAATTTCTTGAGTTTGAAGTACTCAAAGACTTAGTAATTTTCTGCTTCCATTTC
CTAAGATACAGATAGTTTAAATACAACACTTATAAAATAACTACCCCCTAGAAACTCGGACATG
ACTGACTACCTAACTTGAACTGGAATATAAACTGCACTATTACATGAAAATAAATGTACTATTA
CAGAAAAGTAACTTCTACTAAAAAGAAATTACTTTGTAACTTGTAACTAATGGATAACTAAGGA
GTGATAACATTGGACTTGTAGAAGCCTTTTGGGAGTTGAAGAGGAAAGGGAAGTCATAGTCCCG
GTACAGTAAAATATGGACAAGATACCTCTAAATGGTGTTCTATTTTTGTGAATTTAGTGATTTA
ACATGTAGTTTTTTCATATTTCAAATGTTGCCTCATGGTTTTAGATCTTTTTATAGGCCACTTG
TATGTTGAGATATTTCCTGCTTTTGTTGTTAGTTCTTCCTCTACTTAACAATATACCGTTCTTT
TTTCATATTCTGCTCTTATGCTCAGTTTTAATCTTTTCTCTTATACAAAGCGTAATTATGCTAA
TATGACTTGGTTTTCATGTCCACTTTGTTTATCTTCCCAATGAACTGGTAATTTCACTTTTGCT
TTGTCCGTAGAAAGCTGTTAGACTTACTTTATTTTTATGTGACTTCAGTTCCAAGAAAATGCTG
TACCTCCAAACACAAAAGGTAGAAATCCTGAAGACATAGTTGCTCCAGATGTAGAGAATGCTCT
TCAGGCTCCAGCTTTTCCTGCAGCTAATGACATAACTGTTCCGCCTCCGCCCCTTTTAA
Conservation Information
Conserved circRNAs NA
PMCS 0.126677904
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Yang et al., 2020