Detail information of BGIOSGA015265_circ_ag.1


General Information
CircRNA Name BGIOSGA015265_circ_ag.1
ID in PlantcircBase osi_circ_005402
Alias 4:15277633|15363855
Organism Oryza sativa ssp. indica
Position chr4: 15277633-15363855  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ag-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA015263_circ_ag.1
Support reads NA
Tissues leaf
Exon boundary   NA-NA
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   Yes
PCR primers for BSS    F: GTAGAACTAACGATCAATTGGCAGA
R: TTCTAGCAGTAGCTGTCCTCCG
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCATCATTTCTAGCAGTAGCTGTCCTCCGTGTTGCTGAAAAAACTCATCATTTTGTCTTAATAA
AGCTTGTCTTTTTATGCTCCTTTTGTGCCGAATCACctcccatccaaggaaaccaaagagggca
accaatgcaccggcaacaactcctgatgagacgaattggaagttgtaattaatttatggtctaa
gcaagtat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs osa-miR2922 osa-miR5809 osa-miR5788
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description leaf senescence (acting as miRNA sponges)(validated)
Other Information
References Huang et al., 2021