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circRNA ID
Zm00001d025706_circ_g.2
Alias
zma_circ_006431, circb73-0521
Organism
Zea mays
Position
chr10: 126884842-126886918  JBrowse»
Reference genome
AGPv4.38
Type  
u-circRNA
Identification method
CIRI, CIRCexplor2
Parent gene
Zm00001d025706
Parent gene annotation
RNA-binding CRS1 / YhbY (CRM) domain protein
Parent gene strand
-
Alternative splicing
NA
Splice junction sequence  
ACGCTGAGGGTTTTAGGCCTCGAAATGTGAGGTTTGCATGCGCTAGGTCAGCAGCGAGGGCATG
AGCAGCCGCGACGGTGGAGCAGGCGGCGGGTGTCGGtttcaaagttcatgcaccaatgcccaaa
tgacgcacagaaatcttgtgcacttctgacgtccatcattggtgtatgaatactgagtacgtga
acgtgtgg
Support reads
5
Tissues
leaf
Exon boundary  
No-No
Splicing signals  
GT-TG
Sanger sequencing for BSS  
NA
PCR primers for BSS  
NA
Assembled circRNA sequence  
NA
Sanger sequencing for FL  
NA
PCR primers for FL  
NA
Genomic sequence
TTTCAAAGTTCATGCACCAATGCCCAAATGACGCACAGAAATCTTGTGCACTTCTGACGTCCAT
CATTGGTGTATGAATACTGAGTACGTGAACGTGTGGCACAGTAAATGTCTTCATTTCTGAGAGG
GTCCTGCAGAACTATTCCAGCTCCAAAATTACAATTTCATTGTCTTTTATGTAGCAAGGAAGGC
CCAAGAAGTGAAAAGCCTACATAAAAGGGGGCCACAATTCAAAAGAATGTCCTATTTTATCATA
AAAGTGTTTACAGGAAAGATTGCAGAAATATTAAAAGGCTGATCTGCACTCAGTATCATGCTAC
TAGCCTTTCCTTATAGAGATAGATTGATGAACGAGGTATTTTTCAAGTAATACAGCTTTCCATC
AACCAGGATTTTAATCTTGCAAGCCTTTAAAATCCTATGGCTATTACTTCTTCTATCTGAATCT
GAGTTTTCAAGCTAGCTCCCTATATCACCACAACTGAAGCCAGCATATTTAATATGAATAGTGA
ACATTGAGCTATGTAGGCTTGCAAGATTTGACGACTGAAAGATCTATCATGCCAGCATGTCCAA
ATAGTTAGCTCATTTAGAATCTGAGGTAGTTGCAGGATCATCAACAGTGGTATCTTCATTGCTG
ATTTTCTCAATAGCAACCCCCTTATTATGGTTCTTGAATAAAGCAACATGCTTCTTGTAATCTT
CAAGCTCCTTCTCCAGCTTCTCAATAAACTGGCTGGTATGCTCAAGGGATTGTAGATATCTATA
TTTCTCTAAGGCCTATGGTGAACAAAAACAATATCATCATTACATAAAGGCCTTAAATAAAACT
GAGTAATTAAATTGATGCATATATATAAAAACAACCAGGTACGTTTGGACATCAAGCTGCATAG
GCTACTGTAGCACACACAAAAAACTAGCTTTAGTTACCTTCTGCTTCGAAAGAGTTTCAGGAGG
TGACATCACCTTTGGTTGCACATAGTTCTTCCCGCGATAAAACATAATCGTATTATTAGGTTTA
ATATCAATGACTGTGCCTTTGCTGAGCCTTGTCAATTCCTCAGCATACTCGTAAACTTGGCCAG
GCCGACAAGGCTTGCAAACCACCTTCACGGTCTCATGCTTCTTCCAATGGAGGTGCATGTTGAG
AACCACACCACCAAATACCCCTCTCCTCCCAACAGGAACATAATTCTTCTTCTTCTCCCCCGTT
CGCTTGAGATAAAACTTTTCCTCCTCAGTAAGAATCTCAGGGTCATGAACTGGCTCCGGTGTCC
TCGGGACCTCATACTTCCTCAGCTTCTCAATCAACCATTCCTCCTTCCTCTTAGCCTAAACTTC
CACAAAACAACTTGTCAATGCAGCTATTAATCCTAGTAAATTAACAAATCCATTGGCGAGCTAG
CCCAAACAATGCACAAAATTTAGTTGAAGTTCAGACCTTTTCAAGCTTGTATCTGATCCTAACT
TCGGGGTTGGGTGACTTCATCTTCTTCTTGGCCTTCAGGCGGTACCACTTGAGCTGGTTGACCT
TGGCCTTTCTCGACATCTTCTTCTTTGGAGGCGGCTGCTGCCTCCACTTCTGCTTGGTGACACC
CATATCGCCGACTCCAAACCTCGCAAACTTGCCATCTGTATCAAGTGTGATCGTCGTGCTCCCG
CACCTCACGGGCTGCTGAAACCACGGCCTCCTCCGCCCGTGTGCCTCTGGTCCAAACCATCCCC
ACAAACACTTGAACGATGCTGAAGGATATGAGGAAGAGGACCCACACCTTCGATGCCATGAATC
ACTAAAAACAGCCAGTTCAGCAGAGATTAGAGCAAGCAAAAACGAAGGTTGCGTTGGAAGGGCC
AAGGACTAACCGAATGGAGACCAGAGAAGCGACAGAGCGGACGGGTCGCCGCCGTAGGATCCAC
GGCGCGAGAGCTGCCATGGCACCGATGGGCACTAGAGAGGCCACGTGCCGGCCACTGACGCTGA
GGGTTTTAGGCCTCGAAATGTGAGGTTTGCATGCGCTAGGTCAGCAGCGAGGGCATGAGCAGCC
GCGACGGTGGAGCAGGCGGCGGGTGTCGG
Number of exons covered
Zm00001d025706_T004:4
Zm00001d025706_T005:4
Zm00001d025706_T007:4
Zm00001d025706_T002:4
Zm00001d025706_T009:3
Zm00001d025706_T010:3
Zm00001d025706_T008:4
Zm00001d025706_T001:3
Zm00001d025706_T003:4
Zm00001d025706_T006:3
Zm00001d025706_T012:4
Zm00001d025706_T011:3
Conserved circRNAs
NA
Coding potential
Y
Potential coding position
126883755-126886868(-)
Potential amino acid sequence
MKTFTVPHVHVLSIHTPMMDVRSAQDFCASFGHWCMNFETDTRRLLHRRGCSCPRC*
Sponge-miRNAs
NA
circRNA-miRNA-mRNA network
References
Luo et al., 2019

Copyright©2017-2021 Institute of Crop Sciences / Institute of Bioinformatics, Zhejiang University.
Any questions or suggestions, please contact the Fan's lab, bioinplant@zju.edu.cn
For submittion, please click here. Last modified at 2021-03-09.

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