Detail information of Zm00001d008654_circ_g.3


General Information
CircRNA Name Zm00001d008654_circ_g.3
ID in PlantcircBase zma_circ_002691
Alias circ2717
Organism Zea mays
Position chr8: 16015384-16020035  JBrowse»
Reference genome AGPv4.38
Type   u-circRNA
Identification method CIRCexplor2
Parent gene Zm00001d008654
Parent gene annotation WD40/YVTN repeat-like-containing domain;Bromodomain
Parent gene strand +
Alternative splicing Zm00001d008654_circ_g.1 Zm00001d008654_circ_g.2 Zm00001d008654_circ_g.4
Support reads 14
Tissues seedling leaves
Exon boundary   No-Yes
Splicing signals   GT-TA
Number of exons covered Zm00001d008654_T017:3
Zm00001d008654_T038:3
Zm00001d008654_T010:3
Zm00001d008654_T001:3
Zm00001d008654_T047:3
Zm00001d008654_T003:3
Zm00001d008654_T012:3
Zm00001d008654_T005:3
Zm00001d008654_T055:3
Zm00001d008654_T014:3
Zm00001d008654_T022:3
Zm00001d008654_T002:3
Zm00001d008654_T004:3
Zm00001d008654_T011:3
Zm00001d008654_T032:3
Zm00001d008654_T007:3
Zm00001d008654_T019:3
Zm00001d008654_T059:3
Zm00001d008654_T041:3
Zm00001d008654_T023:3
Zm00001d008654_T006:3
Zm00001d008654_T016:3
Zm00001d008654_T020:3
Zm00001d008654_T043:3
Zm00001d008654_T015:3
Zm00001d008654_T008:3
Zm00001d008654_T025:3
Zm00001d008654_T009:3
Zm00001d008654_T056:3
Zm00001d008654_T018:3
Zm00001d008654_T034:3
Zm00001d008654_T024:3
Zm00001d008654_T021:3
Zm00001d008654_T051:3
Zm00001d008654_T013:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCATCTTCCTTATTTCTTATATTCTGCAGATTGCAGAATTTGCGTATGGAATGCTTCTGATGGG
AGCTTGGTGCATTCACTGATTGGCCATAAGGAATCAggttcacgcataatattgttacctgctc
ccgtgatggcagtgcaattatatgggttccacgatctcggaggtcacatgtaagctgttgtatc
ctagaact
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGTTCACGCATAATATTGTTACCTGCTCCCGTGATGGCAGTGCAATTATATGGGTTCCACGATC
TCGGAGGTCACATGTAAGCTGTTGTATCCTAGAACTTCATGATTTTGTTTTCCAAAAAATCTGT
TTCCATGGACATTTTTATGATGATTGATGACATGCATAATTGCCCAATCTAGCTACTGCTATAG
TGGTATCATCACCTCCTGAAATGCTGCCAATCATATTTTATGATTCAGTATGCAACTATGCATT
GACTTTCTTCATTGTGTCATGTTCATTCAGTAATGATGTATCCAGTGCAATATCCAGTGGCAAG
TCAGGTTTACTGGCTCATTTGCACTACTGCCAGTTTGTGCAACTGTAGATCACAAATGCCTTTG
TTGTATGCTATAAATGTGTTCAAAGTAGTTTGTAATTTGTTCAATTGTTCCTGCATTGTTCCAG
GGAAAGATTGGACGTTGGACGCGTGCTTACCATCTTAAAGTTCCCCCACCTCCAATGGCTCCTC
AACCACCTCGAGGTGGTCCTCGTCAAAGATACCAGCCAACTCCTCGTGGTGTCAATATGATAGT
TTGGAGTCTGGACAACCGCTTTGTGCTTGCTGCTATCATGGGTACTTTTGGTCTACTAATTCAT
ATGTTTTCAGTAATTCACTGCAACCATATCCACATTTTACTTGAGTAAAATGCACCAGAGATCT
TAACTTTTGAGTGGGTGTCATCTGGGTCCATCAACTTTTAAACTGCATTTTTGGGTCCCTGAAC
TTTTTAAGTGATTGTTTAGCCCTTAGATCAGCAACCAGCGTGGCAGTGGGATGTTAAAAATGCA
ATTAGCCACTCCTCACCCCATATTCTTCTCCTTGGCCAACTGTGACACCACCGATGCCCTCCAT
GCCTGCGTTCATCAAAGCTGTCCCCACACCTCTGCGCCACCTATGACTCCCTCTCTCGTGCTCG
CTAGTGTCTGTTGTGTCTCCCTCACCCCTCCTTTGTGCTTGGCCTCGTAACCGACGGGGTAGGC
TTGGTCATTGGCTAGCTAGAACAAGGAGGGTAGTAGGCGACAATTGTGTAGGCAGCCGTTGGTG
ATGGTTCCTGCCTTGCTCTTATGTCCTTGTCCATACCCCATGTGCCCCTATTATGTGCTGGCCA
TCATGGATGAGCCGAAGCTCAAGGTGTTGTCTCGTATGGCACCTTGTCTCTCCCAAGAGTGTCA
CTTGTCTTCTCGACTCTCCGACTAGCCCTTGCTTATGCTCATTGTGCCTCCTTTAGTTGGAACC
CTTTCTTTCCACGCTACCCATTGGTCCGTCCTTGCCAGCCATGCACTCTATGGCTTGTGCTCGC
TAGCTTCATGCCCTAGCTGCACTTGCACGCTGGCTCTACGCTCGTGCCTATTTACCGGCTCCAT
GTTGCATGTCGCTCCATTTGACCATGCTGCTGTGGAGCAGGAGGGCCTTTTCGGCTCAAGCTGA
AGTCTACCGCCCAACAGGAAGCCTGTTGCAGTCGGAGCAGCCGTGCAGCCGCTTGTCTGTTGGA
TGCGTGTAGTTTGCCGTCAGTCCGCCACTAGAGCAATAGGCTTGCCATGGAGTCGCCGCCATTT
CGGCCGTGCTGCTACACAGCTCCGCCGCTAGGCAGCATGATTCACGCTGGATTCGCTCTTTTGG
TGGTCCCACACGCCCACACCGCACACTGCCCCCCGTGCCGACATCGCCCATCGATTTTGCGCTT
CGGTACAATCGCACGCTGGCGCACTCGCACGCTGGCCTTGTGTGCCCTCGTCGCCCATTTGCTG
TTTTCTCTAGGCGAGTGGCCCTTCGAGCAGATCAATGACCGGCAACGCTAGCTCCAACATCATT
GGCGTGTGGAAGATGGTGCGGTGAGCATGTGAAAGATAGAGAAACATGGGGGTTATGCAAAAGT
AACTGGCCATAAGATTTGACATGACCTGCATGAGGCATTTCCGCCATGTTGGTTGCTGATTCCA
TGTTGGGTCTAAGGGCCAAACAAAGGGTTATGGACCTCCAGTGAACCACTTAGAAGTTTTATAG
GAAACAAAAAAACGCAGTTTGAGAGTGTAAGTAGTGGAACTCTTACTCTCATCGAGATGATGAC
ACTAGGAGTTGAAACAAATTTTCTGGTTTATTTCTCACACACTCGCACAATGCCATACCAACCT
GAGGGGTTGGGGTTGCATATTTATAGCTGGCCAGGCAACCAAGCATATGCTAAGATGCTGTCCT
CTAGTCTAAGGCCCTGTTTGGGACCGAAGTAGGTCATTAAGAGCTCTAGAAAATCGTGAAGCTG
AAGTTACAAACTTTTAGAAGGCATTTAGATAAGTCATTTTGTTTCATATTTAGATTATTTTTTA
AAACCGTTTAAATTTATATTATACATCACAACTTCACGTTGAAGCTGAACCCAGAGCAGGGCCA
AACACCCCCTAAGATACTGTCCTAGATGTCCTCTAGTCTAGGATGCTGTCCTAGATGCCATCCT
CTAAGGATGTGTTTGGTTGCAATGACAGGACGGGACGGGATGGGACGATCCCTCAAATTTGTTG
TTTGGTTCAAGGTCAAGGGTTGGGACAGGACTATCCCTGTGTTGTCCCTAGTTATCCCTCAAAA
TTGGAGGGACGAGAGAGGACGCCAGGAGACGTCCCTGTCCTGGCTGTCCCGCAACCAAACACAC
CCTAAGATGTCCTCCACAAAAGGACCACAAAGACCACCACAAAGACTTATTCCATCAGAGAGTT
GGTGGACCTAGATGGCACCCCCTCAAGTAAATAGACCTATGACACATTTTACTCTTCTACTTAT
TTTTTTCACTAATATTTGCTTATATAGCCATTTGAATTGTTTAATTGCGCTCTTGGAATTTCCA
TGTTTTTGTCTTAGTTACAAAGTAATTATTCCATTGTTGCTTAATTAAGTATAGGGCTGGAAAA
TAAACTCGAGGCTCACGAGTCAGCTCGAGCTCGGAGCAGTTCGTCTCGGAGTGAGTCGAGCCGA
GCCTGATTTTTGGGCTCGTCGGTGAAACGAGACGAGCCGTTCTGGCTCGCCAAGTCGCGAGCTG
CGCCAACTGTGCTGAATTAACCAATCTGTAGAATCATAATGGATTATCGGTTCATTTCTTAGTC
TTTAATGACGAATATATCGTATATGACAATTCAAAATTTAAATTGCTCATAATATTGAGTAATG
ATTTTATATTTCATATTAAAATACTACTAATTTAATATATAATACAATTATATTTAACAAGGTG
TGGCTCGCGAGCCAACTTCGAGCCGAGCCTCATCCTTGAGCTCGTGCAGTGGACGTGCCGAGCC
GATCCGAGCCAAGCTGAGCTTGGCTCGGCTCGTTTCCAGCCCTAATTAAGTATATATATAAGTA
TGAAGAACCAATCTAATCCTTTTATTTTGCTCCCATTTATGACCAAACAAGAGTGAATCAGATG
ATTGCTCTTTGTCAACCATTTTCCCAGCAACAACGAAAGGGCCTCTAGCGTAATGGTTAAGGCT
TTCGAGTAGCACCTCCAGGTCCCGGGTTAGATCCCCCTCGAGAGCGAATTTCGGGCTTGTTTAA
AAAAATCCCCTCGTTATGCCCCACCCGCTCTCGGGAATCGATATCCTACGCGCCACCCTCCGGC
TAGGCCGTTGCAGAGTGGGCAGTTGATCGACCCGTTAGTGATGGGGGGCCAGGGTTTATCAGTC
ATTAAGACAAGGATACAAGACTTCAACACCACCTTCATAATTGCAACAAGTATCATAACCGTGT
TGGATGTATACTCATTTAATCGTACTTGTATACTCATTTTATTCAAAAGAGATGCCTTATAACA
TGTAATGATTCGAAGGGGAAAAGATATATAATACAAGAAAACATAAACTTTAAATGTGAAGGAG
CTCAGATATTACAATCGATCACAAATATAAGCTTCAACAATGAAGTTGTACCTTCGGAGGCTTT
AAGATGACACGAGCGTGACAAGTACGAGAAAACAATGAAGTTCACCTGTTTTAGGGTTGAGCCC
TTGTACAATCTTGTGTGAAATTACATCTTTACCCTTCCTTTTATATTGTAATGCTTCACATTCA
AGGGTATACATTTATGACATTTCACCGTACAAACATGCCACACACGTCTTCTTTCTGCCGAAGC
TCCTTTTGGGCATCTCCTCCCGACGGAGGTTTTCACCGTTGTTGCCGAAGCTTTGCTTGTAACA
CCTTCGTCTCTATGCTCTTTCAATTTGCTTGTGGGTAGCTAAAGCAGTCTGATGAGGGTTCGGT
GATCAGAGATCAAATTTCTTCGGGGCACTTTAATTGGTGATCAGAGATCGAATACCTTCGGGCC
ACTTTAATCTTCTTGATCTGAAACACCATCTAAACACTGATTTGTTATTTTGGACCTTTGGCTG
AAGGCCTTCTCTCCAACAACCCCCATGTTCAAACCATCCACCTACACATGGTTTGAGTTTCAGT
TTTAGAAGCAATAATCATTTTCTTATTCTTATCATACCAGTATAGTTCAATTATCTCCGCTGTT
ACTTCTATTCATCTTCCTTATTTCTTATATTCTGCAGATTGCAGAATTTGCGTATGGAATGCTT
CTGATGGGAGCTTGGTGCATTCACTGATTGGCCATAAGGAATCA
Conservation Information
Conserved circRNAs NA
PMCS 0.010694479
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chen et al., 2017b