Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os01g0266000_circ_g.4 |
ID in PlantcircBase | osa_circ_001249 |
Alias | Os_ciR6652 |
Organism | Oryza sativa |
Position | chr1: 9078475-9082773 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | CIRCexplorer, find_circ |
Parent gene | Os01g0266000 |
Parent gene annotation |
RNA-binding protein Lupus La domain containing protein. (Os01t02 66000-01) |
Parent gene strand | + |
Alternative splicing | Os01g0266000_circ_g.3 Os01g0266000_circ_g.5 Os01g0266000_circ_g.6 |
Support reads | 2/1 |
Tissues | root/root |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Os01t0266000-01:10 |
Conservation Information | |
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Conserved circRNAs | osi_circ_011506 |
PMCS | 0.202667145 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
9078516-9082770(+) 9078495-9082518(-) |
Potential amino acid sequence |
MDEHGWVPISKVADFNRLKKMTTDIQLIVEALANSSLLEVQDGNMRRRSDWSKWVSLSGTSLPS PSSTSMDNTTGECNKDAYSEDEKKPHPRSVDCVGMGASDEPSHDTLSSSVTSLNKGLSNISIDN KPKSISACSLNSQKHEAAFRTGDVKVQKVNTKIKVPDSQRERGFCNDFISDSPSFSGDQSTFLL DEELELEHAELSHDLYSHKRVDDEEDDFYVDDQDVNRLIIVTQDGPQAFSKEEISRINEGLYYY ENHAYNQRSSQAGTIDIDSKPAGGSKGNPINIVNNGIEDSGQPIPRRRHNRGNRKAQSSHKQRF FPGNFANNTNNRSHYGGVSESPPSNSIGYFYGSTPENHSYRSSRLSSSPHGIPTGSSPVGSVPK SFPPFQHPSHQLLEKNKFQQQRYNKFKNRCIAERKKLGIGCSEEMNSLYRFWSYYLRDNFNDDM YKHFKKFALDDAAANYRYGLECLFRFYSYGLEKNFQRNVYEDFEQLTLEFHHKGDLYGLEKYCD SNLDHDNFLKSLMDEHGWVPISKVADFNRLKKMTTDIQLIVEALANSSLLEVQDGNMRRRSDWS KWVSLSGTSLPSPSSTSMDNTTGECNKDAYSEDEKKPHPRSVDCVGMGASDEPSHDTLSSSVTS LNKGLSNISIDNKPKSISACSLNSQKHEAAFRTGDVKVQKVNTKIKVPDSQRERGFCNDFISDS PSFSGDQSTFLLDEELELEHAELSHDLYSHKRVDDEEDDFYVDDQDVNRLIIVTQDGPQAFSKE EISRINEGLYYYENHAYNQRSSQAGTIDIDSKPAGGSKGNPINIVNNGIEDSGQPIPRRRHNRG NRKAQSSHKQRFFPGNFANNTNNRSHYGGVSESPPSNSIGYFYGSTPENHSYRSSRLSSSPHGI PTGSSPVGSVPKSFPPFQHPSHQLLEKNKFQQQRYNKFKNRCIAERKKLGIGCSEEMNSLYRFW SYYLRDNFNDDMYKHFKKFALDDAAANYRYGLECLFRFYSYGLEKNFQRNVYEDFEQLTLEFHH KGDLYGLEKYCDSNLDHDNFLKSLMDEHGWVPISKVADFNRLKKMTTDIQLIVEALANSSLLEV QDGNMRRRSDWSKWVSLSGTSLPSPSSTSMDNTTGECNKDAYSEDEKKPHPRSVDCVGMGASDE PSHDTLSSSVTSLNKGLSNISIDNKPKSISACSLNSQKHEAAFRTGDVKVQKVNTKIKVPDSQR ERGFCNDFISDSPSFSGDQSTFLLDEELELEHAELSHDLYSHKRVDDEEDDFYVDDQDVNRLII VTQDGPQAFSKEEISRINEGLYYYENHAYNQRSSQAGTIDIDSKPAGGSKGNPINIVNNGIEDS GQPIPRRRHNRGNRKAQSSHKQRFFPGNFANNTNNRSHYGGVSESPPSNSIGYFYGSTPENHSY RSSRLSSSPHGIPTGSSPVGSVPKSFPPFQHPSHQLLEKNKFQQQRYNKFKNRCIAERKKLGIG CSEEMNSLYRFWSYYLRDNFNDDMYKHFKKFALDDAAANYRYGLECLFRFYSYGLEKNFQRNVY EDFEQLTLEFHHKGDLYGLEKYCDSNLDHDNFLKSLMDEHGWVPISKVADFNRLKKMTTDIQLI VEALANSSLLEVQDGNMRRRSDWSKWVSLSGTSLPSPSSTSMDNTTGECNKDAYSEDEKKPHPR SVDCVGMGASDEPSHDTLSSSVTSLNKGLSNISIDNKPKSISACSLNSQKHEAAFRTGDVKVQK VNTKIKVPDSQRERGFCNDFISDSPSFSGDQSTFLLDEELELEHAELSHDLYSHKRVDDEEDDF YVDDQDVNRLIIVTQDGPQAFSKEEISRINEGLYYYENHAYNQRSSQAGTIDIDSKPAGGSKGN PINIVNNGIEDSGQPIPRRRHNRGNRKAQSSHKQRFFPGNFANNTNNRSHYGGVSESPPSNSIG YFYGSTPENHSYRSSRLSSSPHGIPTGSSPVGSVPKSFPPFQHPSHQLLEKNKFQQQRYNKFKN RCIAERKKLGIGCSEEMNSLYRFWSYYLRDNFNDDMYKHFKKFALDDAAANYRYGLECLFRFYS YGLEKNFQRNVYEDFEQLTLEFHHKGDLYGLEKY(+) MIQITITVFFESIKITLVMEFECQLLEIFIHIALEVFLQTITIKSEETFKSISVICCRVI*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ye et al., 2015;Chu et al., 2017 |