Detailed infomation of each circRNA
General Information | |
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CircRNA Name | BGIOSGA028211_circ_g.7 |
ID in PlantcircBase | osi_circ_007607 |
Alias | 8:8046978|8047639 |
Organism | Oryza sativa ssp. indica |
Position | chr8: 8046978-8047639 JBrowse» |
Reference genome | Oryza_indica.ASM465v1.42 |
Type | e-circRNA |
Identification method | find_circ |
Parent gene | BGIOSGA028211 |
Parent gene annotation | NA |
Parent gene strand | + |
Alternative splicing | BGIOSGA028211_circ_g.2 BGIOSGA028211_circ_g.3 BGIOSGA028211_circ_g.4 BGIOSGA028211_circ_g.5 BGIOSGA028211_circ_g.6 BGIOSGA028211_circ_g.8 |
Support reads | NA |
Tissues | leaf |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | BGIOSGA028211-TA:3 |
Conservation Information | |
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Conserved circRNAs | osa_circ_036379* osa_circ_036378 |
PMCS |
Functional Information | |
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Coding potential | Y |
Potential coding position |
8047031-8047278(-) 8047582-8046984(+) 8047023-8047028(+) |
Potential amino acid sequence |
MSIATSSRAPTPPFSRAPDGWPSITAKSEMNCPCLLHNIQLLKGVQHATRPKIQLLSYTYSSFF PLEELPR*(-) MQKTRAIHLRFGGYTGPAIRCS*(+) MDMKARGMYVCRTLSYKGAAFATVEAPLEERMMNMYRKAAEFWAELRVELLSAIEYYAEDKGNS SQIWRLYWASHQVLLRKVVWVLLNLLLWT*(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Huang et al., 2021 |