Detail information of AT3G02510_circ_g.4


General Information
CircRNA Name AT3G02510_circ_g.4
ID in PlantcircBase ath_circ_019312
Alias Chr3:523385|524409
Organism Arabidpsis thaliana
Position chr3: 523385-524409  JBrowse»
Reference genome TAIR10.38
Type   ui-circRNA
Identification method CIRCexplorer; CIRI
Parent gene AT3G02510
Parent gene annotation Putative uncharacterized protein At3g02510
Parent gene strand -
Alternative splicing AT3G02510_circ_g.1 AT3G02510_circ_g.2 AT3G02510_circ_g.3 AT3G02510_circ_g.5 AT3G02510_circ_g.6 AT3G02510_circ_g.7 AT3G02510_circ_g.8 AT3G02510_circ_g.9 AT3G02510_circ_g.10
Support reads 3
Tissues seedling
Exon boundary   No-Yes
Splicing signals   CT-TA
Number of exons covered AT3G02510.1:4
AT3G02510.2:4
AT3G02510.3:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AACGGAGCGAACAGAGTAAGGCTCGAGAGCTTCAACGACGCAAGCCCATTCCTTTTCTTCGTTG
GTACCAATTCCTAGTTGCCCATCTTCTCCAGAGCCCcctgtctgactgtaagtttgggggcaca
acgcttagggatcacaatatctcttcgtacgggcctacccatctcgtcttttaaaggctcttca
ccacattg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTGTCTGACTGTAAGTTTGGGGGCACAACGCTTAGGGATCACAATATCTCTTCGTACGGGCCT
ACCCATCTCGTCTTTTAAAGGCTCTTCACCACATTGTCCATATTCATTCCCACCTATGTGCATT
CCATAATAAATTTTCAATATGATTCACCAAGCAAATCAGATAGAGTATGAAAAGGCATTCTCTT
ACCCCACGCATATGCTCGGCCTTGATCATCAACAGCTAAACAATGCCAACCACCAATTGCTGCC
TATCATCCATTACAAAAGAACACATTCAAAGGTAGAACCAGTAGTTCAATATGATATTCTATAG
AAACCATAATGGATCAGTAGAAAGAAAGATCAAACCTGAGTGATCTTGACATTGGCAAGGGCCT
TGACTCGACTAGGGATGTTCTCTGTTTTTGTTTCTGGTTGGTGTCCTAATGTACCTCTTTGATT
CCAACCCCATGTAAACATCTGAGATCAGTTCAAAGAAGCCGAAACATAACTTAGCGAAATAGAG
GTTTTAAATCTTATTTGTGAATTTAAACCTTTAATTTAGCTATCAAACTACTGAAATAATGACC
AATTCCATGATAACACAAACAAAACCTGTTCAAGAAAACAACTTTGAGCTATAGGCTAGCTTCT
AATCAAGAATCTCAACTAAGAGACTTTTCCCACAAGATAAGAAGACACAGAGCTTCATTGGTTA
TGATTAATAAGCCAAACTATGTGTTTTTTGGTTCCTTCAAATTTTACAAGAACTTATAAAACCA
AACTAAAACAGGTCTCTCAAATTTTACAAGAACTTATAAAATCATGTCCCCAAATGCAAAGAGA
CCAATCAAAACAAGACAAATCTCATTATCATGATATTTCGGATAGTACCGTGCCATCATCGCAA
ATGGCGAGGGAGTTACGGCTACCAGAGACAACGGAGCGAACAGAGTAAGGCTCGAGAGCTTCAA
CGACGCAAGCCCATTCCTTTTCTTCGTTGGTACCAATTCCTAGTTGCCCATCTTCTCCAGAGCC
C
Conservation Information
Conserved circRNAs NA
PMCS 0.148332049
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs th-miRf10261-akr NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description responsive to methyl jasmonate
Other Information
References Zhang et al., 2020