Detail information of BGIOSGA032547_circ_g.4


General Information
CircRNA Name BGIOSGA032547_circ_g.4
ID in PlantcircBase osi_circ_008790
Alias Chr10:3663780_3664644(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr10: 3044095-3044959  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ie-circRNA
Identification method CIRI2
Parent gene BGIOSGA032547
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA032547_circ_g.1 BGIOSGA032547_circ_g.2 BGIOSGA032547_circ_g.3
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-No
Splicing signals   GT-CA
Number of exons covered BGIOSGA032547-TA:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGACATTGATCATACATCTTATGCCCAACGCTCCTTTGAGTTTGCTCCATTCAATTATCTACAA
GGAGTTCTGTGCTCAAGCATCTTCAAGGAATCAGATgggagctgaattgacgatttcttggctg
gaagaaacactgattgaaattaacctgatttttgacatcttgtttctttttttctatgataacc
tttcaagg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGGAGCTGAATTGACGATTTCTTGGCTGGAAGAAACACTGATTGAAATTAACCTGATTTTTGAC
ATCTTGTTTCTTTTTTTCTATGATAACCTTTCAAGGTGTAATGGTGGACTGTGGATAATGTTGT
GTTCGATTTTTAAGGTACATCCTTTTGGTGTCTATTCATTCTGTGGGAATCTGAGATCTCTTCA
CTTGATATTTCAATATTTATTTCTTGAGCACTTATCCTTTTAGGACATGCTATCTGGTTCTTAT
GATGTTGGAAAATTTGCTGTATCTGTTGAAGCAAAAAATTCGTTTCATTATGCTAAAGCTCAGC
TGCTGTTTATTCTCATTCAAACCTTGGACTTTGAAAGTCTACTCCGGATGGTTCGTGATGAAGT
TCCTTTTAGGTATTTATGACTAACTTGGCTTTTTCATTTATGTATGGGAGCATGCCATATTAGT
ATCTTATTAATATGTCAGTGTAACTTCTGTTTAAGAGCTTACATGGTTTTTTTTTTTTGGTCTC
AGCGGAGGGTATTCCACATTTTCTGTTGTTGATATTCTTGAAATGGACGTCGAAGTATCAAAAT
TACCCGAATTTGCAGCAGTAGAATCAGGACCACTTATTCTTGCTTGGGCAGTTTTCCTTTGCCT
GGTCATGTCCCTTCCAGGAAGTAATACCAATTTGGTAAGGATGGCATTCAACCATACACTATTC
TAATGCCATTAGGCTCATTACAGCAAGCAACATTGTATCTTCTTACACTCGTAAGCTTTCAGGA
CATTGATCATACATCTTATGCCCAACGCTCCTTTGAGTTTGCTCCATTCAATTATCTACAAGGA
GTTCTGTGCTCAAGCATCTTCAAGGAATCAGAT
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021